Rh5BG343600

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002578
Physical Location & Seq
Reverse (-)
52160214 .. 52176998
16785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG343600.1

Sequence Viewer

Length: 776 bp
ATGACGCTAGCTTCCTCGACGACGCGGCGGAGGAAGAAGAGGCTACGGAGCCGTCGAGCAGGCGTTGAAAAACCTCCGAACTCTTTGTCGTCGTCTCTCATTACTCAGTTGTTCAGTTCTCAGTTGAGCTGTGGAGCTGAGGATTTCAACACGCCTAATGGGTTTCTATTCAAAAAGTTTTGTTGCCAGCAGAAAGGAGTTGAATTGAATTTTGGGGGAATCACCACTGATGCTCCCTATAGCCAATGGCAGTCTCGAATTATGTATTACTGGTACAAAAAGGTACAAGGCATGCCTGGATCAGATATGGGAAATTTCACTCGAGTTTTACATTCCGGAAATGCTGACAATTTGATGGATGAGATTCCAACTGTTGTTGTTGATCCACTCCCAGAAGGCTTGGATCAGGGCTATATTGTCCTAAATAGACCATGGGCTTTTGTGCAATGGCTGGAGAAAGCAACAATTGAGGAAGAATACATTCTAATGGCCGAACCTGACCATATATTTGTAAATCCTTTGCCCAACTTGGCACATGGAAATAGTCCAGCAGGATTTCCATTTTTCTACATTAAACCAGCTGAAAATGCAAGAATAATTAGGAAATTTTATCCCAAGGAAAAAGGTCCTGTGACTGATGTTGATCCCATTGGCAATTCTCCTGTAATCATAAAGAAGTCCTTGCTGGAAGAAATTGCTCCCACATGGGTGAACATTTCTTTGAGAATGAAGGATGACGTAGAGACTGATAAGGCTTTTGGATGGGTGCTTGAGAT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.22

Weight (kDa)

7.67

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 76 - 258 9.2e-79 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AccIII TCCGGA 1 cut(s) 335
AciI CCGC 2 cut(s) 25, 28
AclWI GGATC 4 cut(s) 307, 377, 411, 638
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 3 cut(s) 208, 313, 605
AfaI GTAC 2 cut(s) 275, 285
AgsI TTSAA 5 cut(s) 68, 148, 172, 203, 208
AjnI CCWGG 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AleI CACNNNNGTG 1 cut(s) 707
AluBI AGCT 4 cut(s) 11, 129, 137, 581
AluI AGCT 4 cut(s) 11, 129, 137, 581
Alw26I GTCTC 3 cut(s) 99, 258, 737
AlwI GGATC 4 cut(s) 307, 377, 411, 638
Ama87I CYCGRG 1 cut(s) 321
Aor13HI TCCGGA 1 cut(s) 335
AoxI GGCC 1 cut(s) 489
ApoI RAATTY 3 cut(s) 208, 313, 605
ArsI GACNNNNNNTTYG 4 cut(s) 71, 103, 491, 523
Asp700I GAANNNNTTC 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 626
AsuHPI GGTGA 2 cut(s) 214, 721
AsuNHI GCTAGC 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 1 cut(s) 626
BbvCI CCTCAGC 1 cut(s) 138
BccI CCATC 2 cut(s) 349, 756
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 3 cut(s) 99, 258, 737
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 626
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 626
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 220
BmtI GCTAGC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 431, 615
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 642
BseAI TCCGGA 1 cut(s) 335
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 431, 615
BseGI GGATG 3 cut(s) 364, 739, 767
BseJI GATNNNNATC 1 cut(s) 642
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 3 cut(s) 119, 129, 134
BseNI ACTGG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 491
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 336
BsmAI GTCTC 3 cut(s) 99, 258, 737
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 321
Bsp13I TCCGGA 1 cut(s) 335
Bsp143I GATC 4 cut(s) 299, 382, 403, 643
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 2 cut(s) 25, 28
BspANI GGCC 1 cut(s) 491
BspCNI CTCAG 3 cut(s) 118, 130, 133
BspEI TCCGGA 1 cut(s) 335
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 4 cut(s) 307, 377, 411, 638
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 431, 615
BssMI GATC 4 cut(s) 299, 382, 403, 643
BssT1I CCWWGG 2 cut(s) 431, 615
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 4 cut(s) 9, 61, 188, 293
BstDEI CTNAG 3 cut(s) 105, 120, 138
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 3 cut(s) 364, 739, 767
BstFNI CGCG 1 cut(s) 25
BstKTI GATC 4 cut(s) 302, 385, 406, 646
BstMAI GTCTC 3 cut(s) 99, 258, 737
BstMBI GATC 4 cut(s) 299, 382, 403, 643
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNI CCWGG 1 cut(s) 297
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 238
BstUI CGCG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 491
BtgI CCRYGG 1 cut(s) 431
BtsCI GGATG 3 cut(s) 364, 739, 767
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 4 cut(s) 9, 61, 188, 293
Cfr13I GGNCC 1 cut(s) 626
CseI GACGC 2 cut(s) 13, 31
Csp6I GTAC 2 cut(s) 274, 284
CviAII CATG 4 cut(s) 292, 432, 536, 705
CviQI GTAC 2 cut(s) 274, 284
DdeI CTNAG 3 cut(s) 105, 120, 138
DpnI GATC 4 cut(s) 301, 384, 405, 645
DpnII GATC 4 cut(s) 299, 382, 403, 643
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 431, 615
Eco47I GGWCC 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 2 cut(s) 431, 615
ErhI CCWWGG 2 cut(s) 431, 615
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 4 cut(s) 295, 435, 539, 708
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 4 cut(s) 291, 431, 535, 704
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 2 cut(s) 371, 746
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 1 cut(s) 491
HapII CCGG 1 cut(s) 336
HgaI GACGC 2 cut(s) 13, 31
Hin1II CATG 4 cut(s) 295, 435, 539, 708
HinfI GANTC 2 cut(s) 219, 364
HpaII CCGG 1 cut(s) 336
HphI GGTGA 2 cut(s) 214, 721
Hpy166II GTNNAC 1 cut(s) 712
Hpy188I TCNGA 2 cut(s) 78, 304
Hpy188III TCNNGA 2 cut(s) 255, 336
Hpy8I GTNNAC 1 cut(s) 712
Hpy99I CGWCG 4 cut(s) 22, 25, 57, 94
HpyAV CCTTC 2 cut(s) 389, 724
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 2 cut(s) 445, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 3 cut(s) 105, 120, 138
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 4 cut(s) 295, 435, 539, 708
Kpn2I TCCGGA 1 cut(s) 335
Kzo9I GATC 4 cut(s) 299, 382, 403, 643
LmnI GCTCC 4 cut(s) 48, 134, 238, 703
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 1 cut(s) 631
MalI GATC 4 cut(s) 301, 384, 405, 645
MboI GATC 4 cut(s) 299, 382, 403, 643
MboII GAAGA 4 cut(s) 46, 49, 485, 701
MfeI CAATTG 1 cut(s) 465
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 6 cut(s) 24, 25, 33, 84, 133, 463
MroI TCCGGA 1 cut(s) 335
MroXI GAANNNNTTC 1 cut(s) 480
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 2 cut(s) 485, 707
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 297
MunI CAATTG 1 cut(s) 465
MvaI CCWGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 587
NcoI CCATGG 1 cut(s) 431
NdeII GATC 4 cut(s) 299, 382, 403, 643
NheI GCTAGC 1 cut(s) 7
NlaIII CATG 4 cut(s) 295, 435, 539, 708
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 631
NspI RCATGY 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 707
PaeI GCATGC 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 2 cut(s) 219, 364
PkrI GCNGC 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 626
Psp5II RGGWCCY 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 626
PspPPI RGGWCCY 1 cut(s) 626
PspXI VCTCGAGB 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 2 cut(s) 275, 285
RsaNI GTAC 2 cut(s) 274, 284
RseI CAYNNNNRTG 2 cut(s) 485, 707
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 4 cut(s) 299, 382, 403, 643
Sau96I GGNCC 1 cut(s) 626
ScrFI CCNGG 1 cut(s) 297
SetI ASST 9 cut(s) 13, 76, 131, 139, 285, 499, 583, 628, 741
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 321
SinI GGWCC 1 cut(s) 626
SlaI CTCGAG 1 cut(s) 321
SmiMI CAYNNNNRTG 2 cut(s) 485, 707
SmlI CTYRAG 2 cut(s) 321, 770
SmoI CTYRAG 2 cut(s) 321, 770
SphI GCATGC 1 cut(s) 295
SsiI CCGC 2 cut(s) 25, 28
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 2 cut(s) 431, 615
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 741
TaqI TCGA 4 cut(s) 17, 55, 256, 322
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 2 cut(s) 219, 364
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 631
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 1 cut(s) 743
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 3 cut(s) 208, 313, 605
XceI RCATGY 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.