Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Forward (+)

4337894 .. 4341088

Gene Structure 3195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGAAAAGCATCAGGCTTGCTTCTGTTTCTCTTGGGTTTTGGGTTCTTTGTTGTCACATATAATCTTCTGACACTTATAGTTCACAATAGATCTGGTGTGAGTAATTCAGATGGAAGTCCACTTCTGGATCCTGTTGTTCAGATGCCTCTAAATATTAGGAAAGCCAAGAGTTCTCCAGCACCTTTTCATGTTGCCTTAACAGCTACAGATGCACCTTATAATAAGTGGCAGTGTCGTATTATGTATTATTGGTATAAGCAGAAGAAAGCTCTTCCTGGTTCTGATATGGGTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCACATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGGGGTATGTTGTCTTGAATAGACCATGGGCATTCGTGCAATGGCTTGAAAGAGCTACCATCAAGGAAGACTATGTGCTCATGGCAGAGCCTGATCATGTATTTGTTAATCCCCTTCCCAATTTGGCTGTTGGAGGATTCCCAGCCGCTTTTCCGTTTTTCTATATTACTCCTGAAAAGTATGAAAACATAGTCAGAAAGTATTATCCAGCGGAGATGGGGCCAGTAACAAATATCGACCCCATTGGCAACTCTCCTGTTATCATAAGCAAGGAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGAAAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATGTACGGTTACGCAATTGCATCTGCTATACATGGGGTGCGTCACATACTTCGGAAGGATTTCATGCTTCAGCCTCCGTGGGATTTGTCTACCAAGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACAACATGAAGGGGGAGCTGACATATGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCACATTTGCGGGGTCCTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTGTGGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0016740 GO:0016757 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

40.33

Weight (kDa)

8.3

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	63 - 356	3.9e-127	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	845
AciI	CCGC	4 cut(s)	534, 599, 958, 989
AclWI	GGATC	4 cut(s)	125, 138, 359, 713
AcuI	CTGAAG	1 cut(s)	809
AfaI	GTAC	1 cut(s)	761
AfiI	CCNNNNNNNGG	2 cut(s)	995, 1063
AflIII	ACRYGT	1 cut(s)	978
AgsI	TTSAA	3 cut(s)	406, 437, 671
AjnI	CCWGG	2 cut(s)	277, 376
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	206, 272, 443, 907, 1043
AluI	AGCT	5 cut(s)	206, 272, 443, 907, 1043
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	4 cut(s)	125, 138, 359, 713
AlwNI	CAGNNNCTG	2 cut(s)	479, 728
AoxI	GGCC	1 cut(s)	608
Asp700I	GAANNNNTTC	1 cut(s)	815
AspS9I	GGNCC	2 cut(s)	608, 962
AsuC2I	CCSGG	1 cut(s)	996
AsuHPI	GGTGA	3 cut(s)	292, 1027, 1045
AvaII	GGWCC	1 cut(s)	962
BamHI	GGATCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	468
BccI	CCATC	6 cut(s)	107, 331, 455, 598, 738, 1024
BciT130I	CCWGG	2 cut(s)	279, 378
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	996
BcoDI	GTCTC	1 cut(s)	703
BfmI	CTRYAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	2 cut(s)	534, 989
BlsI	GCNGC	2 cut(s)	535, 990
Bme1390I	CCNGG	3 cut(s)	279, 378, 996
Bme18I	GGWCC	1 cut(s)	962
BmgT120I	GGNCC	2 cut(s)	608, 962
BmiI	GGNNCC	3 cut(s)	132, 609, 963
BmrFI	CCNGG	3 cut(s)	279, 378, 996
BmsI	GCATC	5 cut(s)	20, 135, 202, 785, 872
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	2 cut(s)	162, 360
BpuMI	CCSGG	1 cut(s)	996
BsaJI	CCNNGG	4 cut(s)	413, 833, 849, 971
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	995, 1063
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	279, 378
BseDI	CCNNGG	4 cut(s)	413, 833, 849, 971
BseGI	GGATG	4 cut(s)	346, 696, 749, 887
BseLI	CCNNNNNNNGG	2 cut(s)	995, 1063
BseMI	GCAATG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	957
BseYI	CCCAGC	1 cut(s)	529
BshFI	GGCC	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	318, 996
BslI	CCNNNNNNNGG	2 cut(s)	995, 1063
BsmAI	GTCTC	1 cut(s)	703
BsmI	GAATGC	2 cut(s)	313, 419
BsnI	GGCC	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	7 cut(s)	92, 130, 364, 385, 481, 718, 947
Bsp19I	CCATGG	1 cut(s)	413
BspACI	CCGC	4 cut(s)	534, 599, 958, 989
BspANI	GGCC	1 cut(s)	610
BspLI	GGNNCC	3 cut(s)	132, 609, 963
BspPI	GGATC	4 cut(s)	125, 138, 359, 713
BspQI	GCTCTTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	4 cut(s)	413, 833, 849, 971
BssMI	GATC	7 cut(s)	92, 130, 364, 385, 481, 718, 947
BssT1I	CCWWGG	3 cut(s)	413, 849, 971
Bst2UI	CCWGG	2 cut(s)	279, 378
Bst4CI	ACNGT	1 cut(s)	764
Bst6I	CTCTTC	2 cut(s)	279, 375
BstC8I	GCNNGC	1 cut(s)	20
BstDSI	CCRYGG	2 cut(s)	413, 833
BstF5I	GGATG	4 cut(s)	346, 696, 749, 887
BstKTI	GATC	7 cut(s)	95, 133, 367, 388, 484, 721, 950
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	7 cut(s)	92, 130, 364, 385, 481, 718, 947
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 212
BstNI	CCWGG	2 cut(s)	279, 378
BstNSI	RCATGY	1 cut(s)	982
BstSCI	CCNGG	3 cut(s)	277, 376, 994
BstSFI	CTRYAG	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	2 cut(s)	92, 130
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	2 cut(s)	92, 130
BsuRI	GGCC	1 cut(s)	610
BtgI	CCRYGG	2 cut(s)	413, 833
BtsCI	GGATG	4 cut(s)	346, 696, 749, 887
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	20
CaiI	CAGNNNCTG	2 cut(s)	479, 728
Cfr13I	GGNCC	2 cut(s)	608, 962
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	1 cut(s)	760
CviAII	CATG	9 cut(s)	191, 414, 469, 485, 687, 788, 820, 895, 979
CviQI	GTAC	1 cut(s)	760
DpnI	GATC	7 cut(s)	94, 132, 366, 387, 483, 720, 949
DpnII	GATC	7 cut(s)	92, 130, 364, 385, 481, 718, 947
Eam1104I	CTCTTC	2 cut(s)	279, 375
EarI	CTCTTC	2 cut(s)	279, 375
Eco130I	CCWWGG	3 cut(s)	413, 849, 971
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	2 cut(s)	277, 376
EcoT14I	CCWWGG	3 cut(s)	413, 849, 971
ErhI	CCWWGG	3 cut(s)	413, 849, 971
FaeI	CATG	9 cut(s)	194, 417, 472, 488, 690, 791, 823, 898, 982
FatI	CATG	9 cut(s)	190, 413, 468, 484, 686, 787, 819, 894, 978
FauI	CCCGC	1 cut(s)	951
FauNDI	CATATG	1 cut(s)	913
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	845
Fnu4HI	GCNGC	2 cut(s)	534, 989
FokI	GGATG	4 cut(s)	353, 703, 756, 894
Fsp4HI	GCNGC	2 cut(s)	534, 989
GluI	GCNGC	2 cut(s)	534, 989
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	2 cut(s)	162, 360
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	2 cut(s)	318, 996
HgaI	GACGC	1 cut(s)	785
Hin1II	CATG	9 cut(s)	194, 417, 472, 488, 690, 791, 823, 898, 982
HinfI	GANTC	3 cut(s)	525, 662, 936
HpaII	CCGG	2 cut(s)	318, 996
HphI	GGTGA	3 cut(s)	292, 1027, 1045
Hpy166II	GTNNAC	3 cut(s)	85, 122, 846
Hpy188I	TCNGA	7 cut(s)	72, 112, 144, 286, 328, 584, 810
Hpy188III	TCNNGA	6 cut(s)	128, 383, 403, 560, 722, 1004
Hpy8I	GTNNAC	3 cut(s)	85, 122, 846
HpyAV	CCTTC	3 cut(s)	512, 805, 892
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4V	TGCA	4 cut(s)	215, 313, 427, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 212
Hsp92II	CATG	9 cut(s)	194, 417, 472, 488, 690, 791, 823, 898, 982
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	7 cut(s)	92, 130, 364, 385, 481, 718, 947
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	685, 904
LweI	GCATC	5 cut(s)	20, 135, 202, 785, 872
MaeIII	GTNAC	5 cut(s)	55, 613, 764, 797, 1015
MalI	GATC	7 cut(s)	94, 132, 366, 387, 483, 720, 949
MboI	GATC	7 cut(s)	92, 130, 364, 385, 481, 718, 947
MboII	GAAGA	6 cut(s)	59, 266, 277, 362, 467, 1039
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	2 cut(s)	92, 130
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	5 cut(s)	106, 322, 508, 771, 1060
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	8 cut(s)	159, 378, 384, 515, 840, 975, 978, 1002
MroXI	GAANNNNTTC	1 cut(s)	815
MseI	TTAA	2 cut(s)	200, 495
MslI	CAYNNNNRTG	2 cut(s)	356, 742
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	2 cut(s)	318, 996
MspR9I	CCNGG	3 cut(s)	279, 378, 996
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	2 cut(s)	313, 419
MvaI	CCWGG	2 cut(s)	279, 378
MwoI	GCNNNNNNNGC	2 cut(s)	203, 212
NciI	CCSGG	1 cut(s)	996
NcoI	CCATGG	1 cut(s)	413
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	7 cut(s)	92, 130, 364, 385, 481, 718, 947
NlaIII	CATG	9 cut(s)	194, 417, 472, 488, 690, 791, 823, 898, 982
NlaIV	GGNNCC	3 cut(s)	132, 609, 963
NmuCI	GTSAC	3 cut(s)	55, 797, 1015
NspI	RCATGY	1 cut(s)	982
OliI	CACNNNNGTG	1 cut(s)	356
PciI	ACATGT	1 cut(s)	978
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	2 cut(s)	313, 419
PdmI	GAANNNNTTC	1 cut(s)	815
PfeI	GAWTC	3 cut(s)	525, 662, 936
PkrI	GCNGC	2 cut(s)	535, 990
PpuMI	RGGWCCY	1 cut(s)	962
PscI	ACATGT	1 cut(s)	978
PsiI	TTATAA	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	2 cut(s)	277, 376
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	2 cut(s)	277, 376
PspN4I	GGNNCC	3 cut(s)	132, 609, 963
PspPI	GGNCC	2 cut(s)	608, 962
PspPPI	RGGWCCY	1 cut(s)	962
PstNI	CAGNNNCTG	2 cut(s)	479, 728
PsuI	RGATCY	2 cut(s)	92, 130
RsaI	GTAC	1 cut(s)	761
RsaNI	GTAC	1 cut(s)	760
RseI	CAYNNNNRTG	2 cut(s)	356, 742
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	200, 495
SatI	GCNGC	2 cut(s)	534, 989
Sau3AI	GATC	7 cut(s)	92, 130, 364, 385, 481, 718, 947
Sau96I	GGNCC	2 cut(s)	608, 962
ScrFI	CCNGG	3 cut(s)	279, 378, 996
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	8 cut(s)	187, 208, 220, 274, 382, 445, 909, 1045
SfaNI	GCATC	5 cut(s)	20, 135, 202, 785, 872
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	2 cut(s)	356, 742
Sse9I	AATT	5 cut(s)	106, 322, 508, 771, 1060
SsiI	CCGC	4 cut(s)	534, 599, 958, 989
SspI	AATATT	1 cut(s)	157
StyD4I	CCNGG	3 cut(s)	277, 376, 994
StyI	CCWWGG	3 cut(s)	413, 849, 971
TaaI	ACNGT	1 cut(s)	764
TaqI	TCGA	2 cut(s)	624, 939
TasI	AATT	5 cut(s)	106, 322, 508, 771, 1060
TauI	GCSGC	2 cut(s)	536, 991
TfiI	GAWTC	3 cut(s)	525, 662, 936
Tru1I	TTAA	2 cut(s)	200, 495
Tru9I	TTAA	2 cut(s)	200, 495
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	3 cut(s)	55, 797, 1015
Tsp45I	GTSAC	3 cut(s)	55, 797, 1015
TspDTI	ATGAA	9 cut(s)	179, 357, 585, 707, 725, 808, 857, 911, 1053
TspGWI	ACGGA	2 cut(s)	531, 822
TspRI	CASTG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	962
XceI	RCATGY	1 cut(s)	982
XmiI	GTMKAC	1 cut(s)	845
XmnI	GAANNNNTTC	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.