Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Forward (+)

3037353 .. 3040259

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGATTGAGAGGAAGAACATGGGACGAGCTTCATCATTAGTTCTGGTCCTTTTGGCTCTTGGGTTTTTCTTTGCTACTTATAATTTGTCAACTATGGTAATTCATTATAGGTTGGTTGGGAAATGGGTAGGTGATAACACGGATAGTGGATTACTGTCTGACCCGATTATTGAGATGCCGGAGAATGCGAAGAAGTTTAAGAATACCAAGGCACCATTCCATGTTGCGTTAACAGCCACTGATACTCCTTACAGCAAATGGCAGTGTCGCATTATGTACTATTGGTATAAGAAGAAGAAGGACTTGCCTGCATCAGAGATGGGAGGATTTACTCGAATTTTGCATTCAGGAAAACCTGACAACTTGATGGATGAGATTCCAACTATTGTGGTTGATCACATTGTCTTAAACAGACCATGGGCTTTTGTGCAATGGCTGGAAAAGGCTACTATTGAGGAAGAATATATTTTGATGGCGGAGCCTGATCACTCAATTTTTATAAATCCTCTTCCTAATTTGGCACTTGGAGGATATCCAGCAGCCTTCCCATTTTTCTACATTAAACCTTCTCAGAATGAGAAGATCATAAGAAAGTTTTATCCTGAGGAGAACGGTCCAGTCACAAAGATTGGTCCAATTGGAAATTCTCCTGTAATTATCAAGAAGGATTTGCTGGAAAAGATTGCTCCTACATGGATGAATGTTTCTTTGAGGATGAAAGAAGACACGGAGACGGATAAAGCTTTCGGATGGGTGCTAGAAATGTATGCTTATGCTGTGGCATCTGCTTTGCATGGTGTGCCGCATATTCTTCGGAAGGACTTCATGGTGCAGCCGCCATGGGATATGGAACTTCGTAAAAAGTTTATCATTCATTATACTTACGGATGTGACTACAACTTAAAGGGTGAGCTAACATATGGAAAAATTGGGGAATGGAGATTTGACAAGAAAGCATATCTACGTGGACCACCACCAAGAAACCTCCCCTTACCTCCTCCTGGGGTTCCTGAGAGTGTGGTCACCCTTGTAAAGATGGTGAATGAAGCTACTGCTAACATTCCTAATTGGGACACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0016740 GO:0016757 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

41.24

Weight (kDa)

8.72

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	81, 500
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	3 cut(s)	476, 803, 836
AcsI	RAATTY	2 cut(s)	336, 643
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	1001
AjnI	CCWGG	1 cut(s)	1000
AjuI	GAANNNNNNNTTGG	4 cut(s)	200, 232, 628, 660
AluBI	AGCT	4 cut(s)	29, 743, 913, 1049
AluI	AGCT	4 cut(s)	29, 743, 913, 1049
Alw26I	GTCTC	1 cut(s)	725
AlwNI	CAGNNNCTG	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	539, 832
ApoI	RAATTY	2 cut(s)	336, 643
Asp700I	GAANNNNTTC	1 cut(s)	821
AspS9I	GGNCC	4 cut(s)	46, 614, 632, 968
AsuHPI	GGTGA	4 cut(s)	143, 920, 1015, 1051
AvaII	GGWCC	4 cut(s)	46, 614, 632, 968
AxyI	CCTNAGG	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	729
BbvI	GCAGC	2 cut(s)	551, 844
BccI	CCATC	5 cut(s)	313, 361, 466, 744, 1030
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	1 cut(s)	1002
BclI	TGATCA	2 cut(s)	394, 484
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	1 cut(s)	758
BisI	GCNGC	4 cut(s)	540, 803, 833, 836
BlsI	GCNGC	4 cut(s)	541, 804, 834, 837
Bme1390I	CCNGG	1 cut(s)	1002
Bme18I	GGWCC	4 cut(s)	46, 614, 632, 968
BmgT120I	GGNCC	4 cut(s)	46, 614, 632, 968
BmiI	GGNNCC	3 cut(s)	213, 480, 1008
BmrFI	CCNGG	1 cut(s)	1002
BmsI	GCATC	3 cut(s)	165, 320, 791
BpiI	GAAGAC	1 cut(s)	729
BsaAI	YACGTR	1 cut(s)	965
BsaJI	CCNNGG	4 cut(s)	207, 416, 839, 1001
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	1001
Bse1I	ACTGG	1 cut(s)	617
Bse21I	CCTNAGG	1 cut(s)	603
Bse3DI	GCAATG	1 cut(s)	437
BseBI	CCWGG	1 cut(s)	1002
BseDI	CCNNGG	4 cut(s)	207, 416, 839, 1001
BseGI	GGATG	5 cut(s)	376, 702, 720, 755, 893
BseLI	CCNNNNNNNGG	1 cut(s)	1001
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	3 cut(s)	584, 594, 1002
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	2 cut(s)	620, 987
BseXI	GCAGC	2 cut(s)	551, 844
BsgI	GTGCAG	1 cut(s)	851
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	1001
BsmAI	GTCTC	1 cut(s)	725
BsmBI	CGTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	2 cut(s)	190, 343
Bsp143I	GATC	3 cut(s)	394, 484, 582
Bsp19I	CCATGG	2 cut(s)	416, 839
BspACI	CCGC	3 cut(s)	476, 803, 836
BspCNI	CTCAG	3 cut(s)	583, 595, 1003
BspLI	GGNNCC	3 cut(s)	213, 480, 1008
BspT107I	GGYRCC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	4 cut(s)	207, 416, 839, 1001
BssMI	GATC	3 cut(s)	394, 484, 582
BssT1I	CCWWGG	3 cut(s)	207, 416, 839
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	2 cut(s)	156, 614
Bst6I	CTCTTC	1 cut(s)	513
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstBAI	YACGTR	1 cut(s)	965
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	570, 603, 1011
BstDSI	CCRYGG	2 cut(s)	416, 839
BstEII	GGTNACC	1 cut(s)	1021
BstF5I	GGATG	5 cut(s)	376, 702, 720, 755, 893
BstKTI	GATC	3 cut(s)	397, 487, 585
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	3 cut(s)	394, 484, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 799
BstNI	CCWGG	1 cut(s)	1002
BstPI	GGTNACC	1 cut(s)	1021
BstSCI	CCNGG	1 cut(s)	1000
BstV1I	GCAGC	2 cut(s)	551, 844
BstV2I	GAAGAC	1 cut(s)	729
Bsu36I	CCTNAGG	1 cut(s)	603
BtgI	CCRYGG	2 cut(s)	416, 839
BtsCI	GGATG	5 cut(s)	376, 702, 720, 755, 893
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	237, 269
Cac8I	GCNNGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	4 cut(s)	46, 614, 632, 968
Csp6I	GTAC	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	7 cut(s)	19, 221, 417, 693, 794, 826, 840
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	570, 603, 1011
DpnI	GATC	3 cut(s)	396, 486, 584
DpnII	GATC	3 cut(s)	394, 484, 582
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	491
Eco130I	CCWWGG	3 cut(s)	207, 416, 839
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	4 cut(s)	46, 614, 632, 968
Eco81I	CCTNAGG	1 cut(s)	603
Eco91I	GGTNACC	1 cut(s)	1021
EcoO65I	GGTNACC	1 cut(s)	1021
EcoRII	CCWGG	1 cut(s)	1000
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	3 cut(s)	207, 416, 839
ErhI	CCWWGG	3 cut(s)	207, 416, 839
Esp3I	CGTCTC	1 cut(s)	725
FaeI	CATG	7 cut(s)	22, 224, 420, 696, 797, 829, 843
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	7 cut(s)	18, 220, 416, 692, 793, 825, 839
FauNDI	CATATG	1 cut(s)	919
FbaI	TGATCA	2 cut(s)	394, 484
Fnu4HI	GCNGC	4 cut(s)	540, 803, 833, 836
FokI	GGATG	5 cut(s)	383, 709, 727, 762, 900
Fsp4HI	GCNGC	4 cut(s)	540, 803, 833, 836
FspBI	CTAG	1 cut(s)	758
GluI	GCNGC	4 cut(s)	540, 803, 833, 836
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	7 cut(s)	22, 224, 420, 696, 797, 829, 843
HincII	GTYRAC	2 cut(s)	90, 231
HindII	GTYRAC	2 cut(s)	90, 231
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	1 cut(s)	376
HpaI	GTTAAC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	4 cut(s)	143, 920, 1015, 1051
Hpy166II	GTNNAC	3 cut(s)	90, 231, 968
Hpy188I	TCNGA	5 cut(s)	160, 316, 573, 749, 816
Hpy188III	TCNNGA	4 cut(s)	348, 602, 661, 1010
Hpy8I	GTNNAC	3 cut(s)	90, 231, 968
HpyAV	CCTTC	5 cut(s)	292, 553, 576, 658, 811
HpyCH4III	ACNGT	2 cut(s)	156, 614
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	5 cut(s)	311, 343, 430, 793, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 799
HpyF3I	CTNAG	3 cut(s)	570, 603, 1011
HpySE526I	ACGT	1 cut(s)	964
Hsp92II	CATG	7 cut(s)	22, 224, 420, 696, 797, 829, 843
Ksp22I	TGATCA	2 cut(s)	394, 484
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	394, 484, 582
LmnI	GCTCC	2 cut(s)	478, 691
Lsp1109I	GCAGC	2 cut(s)	551, 844
LweI	GCATC	3 cut(s)	165, 320, 791
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	3 cut(s)	619, 890, 1021
MalI	GATC	3 cut(s)	396, 486, 584
MboI	GATC	3 cut(s)	394, 484, 582
MboII	GAAGA	9 cut(s)	25, 202, 304, 307, 470, 500, 592, 734, 803
MfeI	CAATTG	1 cut(s)	636
MmeI	TCCRAC	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	821
MseI	TTAA	5 cut(s)	198, 230, 407, 561, 902
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	1002
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	2 cut(s)	190, 343
MvaI	CCWGG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	2 cut(s)	233, 799
NcoI	CCATGG	2 cut(s)	416, 839
NdeI	CATATG	1 cut(s)	919
NdeII	GATC	3 cut(s)	394, 484, 582
NlaIII	CATG	7 cut(s)	22, 224, 420, 696, 797, 829, 843
NlaIV	GGNNCC	3 cut(s)	213, 480, 1008
NmuCI	GTSAC	3 cut(s)	619, 890, 1021
PctI	GAATGC	2 cut(s)	190, 343
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	541, 804, 834, 837
Ppu21I	YACGTR	1 cut(s)	965
PsiI	TTATAA	2 cut(s)	81, 500
Psp6I	CCWGG	1 cut(s)	1000
PspEI	GGTNACC	1 cut(s)	1021
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	3 cut(s)	213, 480, 1008
PspPI	GGNCC	4 cut(s)	46, 614, 632, 968
PstNI	CAGNNNCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	5 cut(s)	198, 230, 407, 561, 902
SatI	GCNGC	4 cut(s)	540, 803, 833, 836
Sau3AI	GATC	3 cut(s)	394, 484, 582
Sau96I	GGNCC	4 cut(s)	46, 614, 632, 968
ScrFI	CCNGG	1 cut(s)	1002
SfaNI	GCATC	3 cut(s)	165, 320, 791
SinI	GGWCC	4 cut(s)	46, 614, 632, 968
SsiI	CCGC	3 cut(s)	476, 803, 836
SspMI	CTAG	1 cut(s)	758
StyD4I	CCNGG	1 cut(s)	1000
StyI	CCWWGG	3 cut(s)	207, 416, 839
TaaI	ACNGT	2 cut(s)	156, 614
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	1 cut(s)	334
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	2 cut(s)	805, 838
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	5 cut(s)	198, 230, 407, 561, 902
Tru9I	TTAA	5 cut(s)	198, 230, 407, 561, 902
TscAI	CASTG	2 cut(s)	244, 269
TseFI	GTSAC	3 cut(s)	619, 890, 1021
TseI	GCWGC	2 cut(s)	539, 832
Tsp45I	GTSAC	3 cut(s)	619, 890, 1021
TspDTI	ATGAA	7 cut(s)	21, 92, 713, 731, 814, 863, 1059
TspGWI	ACGGA	4 cut(s)	155, 743, 749, 900
TspRI	CASTG	2 cut(s)	244, 269
VpaK11BI	GGWCC	4 cut(s)	46, 614, 632, 968
XapI	RAATTY	2 cut(s)	336, 643
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.