Rh5DG356400

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002578
Physical Location & Seq
Reverse (-)
52912726 .. 52919110
6385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG356400.1

Sequence Viewer

Length: 699 bp
ATGATCGGGAGAAAAAGTACTGGACGCGTATCACCAATACTTTTGGTGCTTTTGGCACTTGGGTTTTCCTTTGCTACATATAACTTGCTAAGCATAGTAATACACAACAAAGCTTCCTACTCGGCGCTTTTGCTGGCAGATGAATCGGAATTATTAAAAGAACCAGTTATTTGGAGGGCCGAAAATGCAAGTAGAGCAGGAAATTTGAACTCAAAGTTTCATGTTGCGCTTACAGCCACTGATGCTCCCTATAGCCAATGGCAGTCTCGAATTATGTATTACTGGTACAAAAAGGTACAAGGCATGCCTGGATCAGATATGGGAAATTTCACTCGAGTTTTACATTCCGGAAATGCTGACAATTTGATGGATGAGATTCCAACTGTTGTTGTTGATCCACTCCCAGAAGGCTTGGATCAGGGCTATATTGTCCTAAATAGACCATGGGCTTTTGTGCAATGGCTGGAGAAAGCAACAATTGAGGAAGAATACATTCTAATGGCCGAACCTGACCATATATTTGTAAATCCTTTGCCCAACTTGGCACATGGAAATAGTCCAGCAGGATTTCCATTTTTCTACATTAAACCAGCTGAAAATGCAAGAATAATTAGGAAATTTTATCCCAAGGAAAAAGGTCCTGTGACTGATGTTGATCCCATTGGCAATTCTCCTGTAATCATAAAGAAGGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.02

Weight (kDa)

6.98

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 73 - 230 8.3e-68 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 347
AclWI GGATC 4 cut(s) 319, 389, 423, 650
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 3 cut(s) 202, 325, 617
AfaI GTAC 3 cut(s) 19, 287, 297
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 2 cut(s) 113, 593
AluI AGCT 2 cut(s) 113, 593
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 4 cut(s) 319, 389, 423, 650
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 333
Aor13HI TCCGGA 1 cut(s) 347
AoxI GGCC 2 cut(s) 177, 501
ApoI RAATTY 3 cut(s) 202, 325, 617
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 2 cut(s) 127, 229
AspS9I GGNCC 2 cut(s) 177, 638
AsuHPI GGTGA 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 1 cut(s) 638
BccI CCATC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 250
BfoI RGCGCY 1 cut(s) 128
BlpI GCTNAGC 1 cut(s) 89
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 638
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 177, 638
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 485
Bpu1102I GCTNAGC 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 443, 627
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 3 cut(s) 31, 229, 259
Bse1I ACTGG 3 cut(s) 25, 164, 287
Bse3DI GCAATG 1 cut(s) 464
Bse8I GATNNNNATC 1 cut(s) 654
BseAI TCCGGA 1 cut(s) 347
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 443, 627
BseGI GGATG 1 cut(s) 376
BseJI GATNNNNATC 1 cut(s) 654
BseMI GCAATG 1 cut(s) 464
BseNI ACTGG 3 cut(s) 25, 164, 287
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 179, 503
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 270
BsnI GGCC 2 cut(s) 179, 503
BsoBI CYCGRG 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 347
Bsp143I GATC 5 cut(s) 3, 311, 394, 415, 655
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 443
BspANI GGCC 2 cut(s) 179, 503
BspEI TCCGGA 1 cut(s) 347
BspFNI CGCG 1 cut(s) 27
BspPI GGATC 4 cut(s) 319, 389, 423, 650
BsrDI GCAATG 1 cut(s) 464
BsrI ACTGG 3 cut(s) 25, 164, 287
BssECI CCNNGG 2 cut(s) 443, 627
BssMI GATC 5 cut(s) 3, 311, 394, 415, 655
BssT1I CCWWGG 2 cut(s) 443, 627
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 385
BstC8I GCNNGC 2 cut(s) 135, 305
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 443
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 2 cut(s) 127, 229
BstKTI GATC 5 cut(s) 6, 314, 397, 418, 658
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 5 cut(s) 3, 311, 394, 415, 655
BstMWI GCNNNNNNNGC 5 cut(s) 185, 194, 233, 242, 599
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 250
BstUI CGCG 1 cut(s) 27
BstXI CCANNNNNNTGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 179, 503
BtgI CCRYGG 1 cut(s) 443
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 135, 305
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 2 cut(s) 127, 229
Cfr13I GGNCC 2 cut(s) 177, 638
CseI GACGC 1 cut(s) 33
Csp6I GTAC 3 cut(s) 18, 286, 296
CviAII CATG 4 cut(s) 221, 304, 444, 548
CviQI GTAC 3 cut(s) 18, 286, 296
DdeI CTNAG 1 cut(s) 89
DpnI GATC 5 cut(s) 5, 313, 396, 417, 657
DpnII GATC 5 cut(s) 3, 311, 394, 415, 655
EaeI YGGCCR 1 cut(s) 501
Eco130I CCWWGG 2 cut(s) 443, 627
Eco47I GGWCC 1 cut(s) 638
Eco88I CYCGRG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 443, 627
ErhI CCWWGG 2 cut(s) 443, 627
FaeI CATG 4 cut(s) 224, 307, 447, 551
FatI CATG 4 cut(s) 220, 303, 443, 547
FokI GGATG 1 cut(s) 383
GlaI GCGC 2 cut(s) 126, 228
GsuI CTGGAG 1 cut(s) 485
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 2 cut(s) 179, 503
HapII CCGG 1 cut(s) 348
HgaI GACGC 1 cut(s) 33
HhaI GCGC 2 cut(s) 127, 229
Hin1II CATG 4 cut(s) 224, 307, 447, 551
Hin6I GCGC 2 cut(s) 125, 227
HinP1I GCGC 2 cut(s) 125, 227
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 2 cut(s) 143, 376
HpaII CCGG 1 cut(s) 348
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 148, 316
Hpy188III TCNNGA 3 cut(s) 7, 267, 348
HpyAV CCTTC 2 cut(s) 401, 682
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 188, 457, 602
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 194, 233, 242, 599
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 4 cut(s) 224, 307, 447, 551
HspAI GCGC 2 cut(s) 125, 227
Kpn2I TCCGGA 1 cut(s) 347
Kzo9I GATC 5 cut(s) 3, 311, 394, 415, 655
LmnI GCTCC 1 cut(s) 250
LweI GCATC 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 643
MalI GATC 5 cut(s) 5, 313, 396, 417, 657
MboI GATC 5 cut(s) 3, 311, 394, 415, 655
MboII GAAGA 1 cut(s) 497
MfeI CAATTG 1 cut(s) 477
MluCI AATT 9 cut(s) 149, 202, 270, 325, 361, 477, 609, 617, 667
MluI ACGCGT 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 2 cut(s) 168, 475
MroI TCCGGA 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 2 cut(s) 155, 585
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 5 cut(s) 185, 194, 233, 242, 599
NcoI CCATGG 1 cut(s) 443
NdeII GATC 5 cut(s) 3, 311, 394, 415, 655
NlaIII CATG 4 cut(s) 224, 307, 447, 551
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 643
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 2 cut(s) 143, 376
PpuMI RGGWCCY 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 2 cut(s) 177, 638
PspPPI RGGWCCY 1 cut(s) 638
PspXI VCTCGAGB 1 cut(s) 333
PstNI CAGNNNCTG 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 3 cut(s) 19, 287, 297
RsaNI GTAC 3 cut(s) 18, 286, 296
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 2 cut(s) 155, 585
Sau3AI GATC 5 cut(s) 3, 311, 394, 415, 655
Sau96I GGNCC 2 cut(s) 177, 638
ScaI AGTACT 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 309
SetI ASST 6 cut(s) 115, 297, 511, 595, 640, 693
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 638
SlaI CTCGAG 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
SphI GCATGC 1 cut(s) 307
Sse9I AATT 9 cut(s) 149, 202, 270, 325, 361, 477, 609, 617, 667
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 2 cut(s) 443, 627
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 2 cut(s) 268, 334
TasI AATT 9 cut(s) 149, 202, 270, 325, 361, 477, 609, 617, 667
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 2 cut(s) 143, 376
Tru1I TTAA 2 cut(s) 155, 585
Tru9I TTAA 2 cut(s) 155, 585
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 643
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 2 cut(s) 156, 209
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 3 cut(s) 202, 325, 617
XceI RCATGY 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 492
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.