Rorug01G0050900

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002578
Physical Location & Seq
Forward (+)
8299158 .. 8300972
1815 bp
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UTR
Exon/CDS
Intron
Rorug01G0050900.1

Sequence Viewer

Length: 432 bp
ATGAAGTCAAGTCAAGAGCATGTTTTGTGGCTCTCCATTGAGTATGCAGACAATGATCTTGTGGCTGCACAAGCTTCTTTCTCAGTGACTCAGCCAAAGTTTGACACTGCAGATGCAACTGTTGTTGAAGAGGATAGCCATGCTGCAAGTATGCATGAGTTCATAACGCTTAGGGAGGAAAAAGATGTTGTCGAGATCAATAACGAAGTTGGTAAATACTTGCTAGAGCCAACAAATGCAAGTTTCCAACTGTTGGATTCGTGGAAAGAAAATTTGCAAAGATATCCAATTCTATCACAGATCGCAAGGGATGTTTTGGCTGTACCTGCATTAATAGTTGCCTCTGAAAGTGTATTCAGTCTTGGGAAGACGATTGTGGATACATTTATGGCAAGTTTGACCCCTAAAATGGTTGAGACTCTTGTCTATTGA

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

4.46

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 73 - 143 1.3e-17 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 253
AcsI RAATTY 1 cut(s) 271
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 253, 409
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 410
ApeKI GCWGC 2 cut(s) 65, 143
ApoI RAATTY 1 cut(s) 271
AseI ATTAAT 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 52, 130
BciVI GTATCC 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 334
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 2 cut(s) 66, 144
BlsI GCNGC 2 cut(s) 67, 145
BmsI GCATC 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 409
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 253, 409
BseMII CTCAG 2 cut(s) 96, 104
BseXI GCAGC 2 cut(s) 52, 130
BsgI GTGCAG 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 253, 409
BsmAI GTCTC 1 cut(s) 410
Bsp143I GATC 3 cut(s) 55, 195, 300
BspCNI CTCAG 2 cut(s) 95, 103
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 334
BssMI GATC 3 cut(s) 55, 195, 300
Bst4CI ACNGT 2 cut(s) 121, 252
Bst6I CTCTTC 1 cut(s) 123
BstDEI CTNAG 3 cut(s) 82, 90, 170
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 3 cut(s) 58, 198, 303
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 55, 195, 300
BstMWI GCNNNNNNNGC 2 cut(s) 71, 326
BstNSI RCATGY 1 cut(s) 23
BstPAI GACNNNNGTC 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 52, 130
BstV2I GAAGAC 1 cut(s) 374
BsuI GTATCC 1 cut(s) 373
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 90, 105
BveI ACCTGC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 20, 140, 155
CviJI RGCY 7 cut(s) 31, 65, 74, 94, 138, 229, 320
CviKI_1 RGCY 7 cut(s) 31, 65, 74, 94, 138, 229, 320
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 3 cut(s) 82, 90, 170
DpnI GATC 3 cut(s) 57, 197, 302
DpnII GATC 3 cut(s) 55, 195, 300
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco32I GATATC 1 cut(s) 284
EcoRV GATATC 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 156
FaeI CATG 3 cut(s) 23, 143, 158
FaiI YATR 7 cut(s) 21, 45, 141, 152, 156, 164, 389
FatI CATG 3 cut(s) 19, 139, 154
Fnu4HI GCNGC 2 cut(s) 66, 144
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 66, 144
FspBI CTAG 1 cut(s) 224
GluI GCNGC 2 cut(s) 66, 144
Hin1II CATG 3 cut(s) 23, 143, 158
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 3 cut(s) 88, 257, 418
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 14, 193
HpyCH4III ACNGT 2 cut(s) 121, 252
HpyCH4V TGCA 9 cut(s) 47, 68, 110, 116, 146, 154, 239, 277, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 326
HpyF3I CTNAG 3 cut(s) 82, 90, 170
Hsp92II CATG 3 cut(s) 23, 143, 158
Kzo9I GATC 3 cut(s) 55, 195, 300
LpnPI CCDG 1 cut(s) 339
Lsp1109I GCAGC 2 cut(s) 52, 130
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 57, 197, 302
MboI GATC 3 cut(s) 55, 195, 300
MboII GAAGA 2 cut(s) 140, 379
MluCI AATT 2 cut(s) 271, 288
MlyI GAGTC 2 cut(s) 82, 412
MmeI TCCRAC 2 cut(s) 234, 271
MnlI CCTC 3 cut(s) 124, 169, 352
Mph1103I ATGCAT 1 cut(s) 156
MseI TTAA 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 71, 326
NdeII GATC 3 cut(s) 55, 195, 300
NlaIII CATG 3 cut(s) 23, 143, 158
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 156
NspI RCATGY 1 cut(s) 23
PfeI GAWTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 2 cut(s) 67, 145
PleI GAGTC 2 cut(s) 82, 412
PpsI GAGTC 2 cut(s) 82, 412
PshAI GACNNNNGTC 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 332
PstI CTGCAG 1 cut(s) 112
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 66, 144
Sau3AI GATC 3 cut(s) 55, 195, 300
SchI GAGTC 2 cut(s) 82, 412
SetI ASST 2 cut(s) 76, 328
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 2 cut(s) 271, 288
SspMI CTAG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 121, 252
TaqI TCGA 1 cut(s) 192
TasI AATT 2 cut(s) 271, 288
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 90, 112
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 65, 143
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 17, 151
TspRI CASTG 2 cut(s) 90, 112
Van91I CCANNNNNTGG 1 cut(s) 253
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 1 cut(s) 271
XceI RCATGY 1 cut(s) 23
XspI CTAG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.