Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Forward (+)

3584781 .. 3590444

Gene Structure 5664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATTGGGAGGAAGAACATGGGGCTTGCTTCACCATTACTTCTGGTTCTTTTGGCTTTTGGCTTTTTCTTTGCCACTTACAATTTTTTGACAATGATACTCCACTATAGATCTGCTGGGAAGTGGGTAGGTGATAGTACGAATGGTCGGTTACTGGCTGACCCCATTGTCGAGATGCCAGAGAATCTGAAATTCAAAAGTTCCAAATCACCCTTCCATGTTGCTTTAACAGCAACGGATGCTCCATATAGTAAATGGCAGTGTCGCATTATGTACTATTGGTATAAGAAGATGAAGGACATGCCTGGATCAGAAATGGGAGGATTTACTCGAATTTTGCACTCGGGAAGTCCTGACAACTTGATGGATGAGATTCCCACTATGGTGGTTGATCCTCTGCCTGCCGGTCTTGATCGGGACTTGTTGGAAAAGATTTCGCCGACATGGATGAATATTTCTTTGAGCATGAAAGAAGATGCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATGTATGCTTATGCTGTAGCATCTGCGTTGCATGGCGTGCAGCATGTTCTTCGGAAGGACTTCATGCTGCAGCCTCCTTGGGATTTGGAAATTGGTAAAAAGTTTATTATTCACTATACTTATGGATGTGACTACAACTTAAAGGGTGAGCTCACATATGGAAAAATTGGGGAATGGAGATTCGATAAGAGATCATATCTACGTGGACCTCCACCTAGAAATCTTCCTTTACCCCCTCCGGGGGTTCCTGAGAGTGTGGCCACCCTTGTAAAGATGGTGAACGAAGCTACTGCTAACATTCCTAATTGGGACACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0016740 GO:0016757 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

31.45

Weight (kDa)

7.73

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	72 - 138	1.6e-26	Hydroxyproline O-arabinosyltransferase family
HPAT	PF23452	134 - 275	2.5e-53	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	316, 386
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	2 cut(s)	191, 333
AfaI	GTAC	2 cut(s)	139, 275
AfiI	CCNNNNNNNGG	3 cut(s)	752, 753, 754
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	494, 664, 800
AluI	AGCT	3 cut(s)	494, 664, 800
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	316, 386
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	1 cut(s)	771
ApeKI	GCWGC	3 cut(s)	553, 580, 583
ApoI	RAATTY	2 cut(s)	191, 333
Asp700I	GAANNNNTTC	1 cut(s)	572
AspS9I	GGNCC	1 cut(s)	719
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	5 cut(s)	24, 143, 201, 671, 802
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	719
BalI	TGGCCA	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	666
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	3 cut(s)	565, 567, 595
BccI	CCATC	3 cut(s)	358, 495, 781
BcgI	CGANNNNNNTGC	4 cut(s)	545, 579, 785, 819
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	2 cut(s)	509, 729
BfmI	CTRYAG	3 cut(s)	106, 528, 581
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	3 cut(s)	554, 581, 584
BlsI	GCNGC	3 cut(s)	555, 582, 585
Bme1390I	CCNGG	2 cut(s)	306, 753
Bme18I	GGWCC	1 cut(s)	719
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	2 cut(s)	306, 753
BmsI	GCATC	4 cut(s)	165, 229, 466, 542
BpuMI	CCSGG	1 cut(s)	753
BsaAI	YACGTR	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	590, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	3 cut(s)	752, 753, 754
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	590, 752
BseGI	GGATG	5 cut(s)	244, 373, 453, 506, 644
BseLI	CCNNNNNNNGG	3 cut(s)	752, 753, 754
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	565, 567, 595
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	572
BshFI	GGCC	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	666
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	405, 752
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	752, 753, 754
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	773
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	5 cut(s)	110, 308, 391, 412, 704
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	759
BspMAI	CTGCAG	1 cut(s)	585
BspPI	GGATC	2 cut(s)	316, 386
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	590, 752
BssMI	GATC	5 cut(s)	110, 308, 391, 412, 704
BssT1I	CCWWGG	1 cut(s)	590
Bst2UI	CCWGG	1 cut(s)	306
BstAPI	GCANNNNNTGC	2 cut(s)	239, 550
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	3 cut(s)	27, 402, 551
BstDEI	CTNAG	1 cut(s)	762
BstF5I	GGATG	5 cut(s)	244, 373, 453, 506, 644
BstKTI	GATC	5 cut(s)	113, 311, 394, 415, 707
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	5 cut(s)	110, 308, 391, 412, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 239, 550
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	2 cut(s)	304, 560
BstSCI	CCNGG	2 cut(s)	304, 751
BstSFI	CTRYAG	3 cut(s)	106, 528, 581
BstV1I	GCAGC	3 cut(s)	565, 567, 595
BstX2I	RGATCY	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	773
BtsCI	GGATG	5 cut(s)	244, 373, 453, 506, 644
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	27, 402, 551
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	719
Csp6I	GTAC	2 cut(s)	138, 274
CviAII	CATG	8 cut(s)	19, 218, 301, 444, 466, 545, 557, 577
CviJI	RGCY	9 cut(s)	25, 56, 63, 158, 494, 586, 664, 773, 800
CviKI_1	RGCY	9 cut(s)	25, 56, 63, 158, 494, 586, 664, 773, 800
CviQI	GTAC	2 cut(s)	138, 274
DdeI	CTNAG	1 cut(s)	762
DpnI	GATC	5 cut(s)	112, 310, 393, 414, 706
DpnII	GATC	5 cut(s)	110, 308, 391, 412, 704
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	771
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	1 cut(s)	590
Eco24I	GRGCYC	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	719
Eco53kI	GAGCTC	1 cut(s)	664
Eco88I	CYCGRG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	590
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	590
FaeI	CATG	8 cut(s)	22, 221, 304, 447, 469, 548, 560, 580
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	8 cut(s)	18, 217, 300, 443, 465, 544, 556, 576
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	3 cut(s)	554, 581, 584
FokI	GGATG	5 cut(s)	251, 380, 460, 513, 651
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	3 cut(s)	554, 581, 584
FspBI	CTAG	2 cut(s)	509, 729
GluI	GCNGC	3 cut(s)	554, 581, 584
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	773
HapII	CCGG	2 cut(s)	405, 752
Hin1II	CATG	8 cut(s)	22, 221, 304, 447, 469, 548, 560, 580
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	3 cut(s)	184, 373, 693
HpaII	CCGG	2 cut(s)	405, 752
HphI	GGTGA	5 cut(s)	24, 143, 201, 671, 802
Hpy166II	GTNNAC	2 cut(s)	719, 793
Hpy188I	TCNGA	3 cut(s)	189, 313, 567
Hpy188III	TCNNGA	6 cut(s)	172, 345, 353, 410, 416, 761
Hpy8I	GTNNAC	2 cut(s)	719, 793
HpyAV	CCTTC	3 cut(s)	223, 289, 562
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	5 cut(s)	340, 479, 544, 553, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 239, 550
HpyF3I	CTNAG	1 cut(s)	762
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	8 cut(s)	22, 221, 304, 447, 469, 548, 560, 580
Kzo9I	GATC	5 cut(s)	110, 308, 391, 412, 704
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	565, 567, 595
LweI	GCATC	4 cut(s)	165, 229, 466, 542
MaeI	CTAG	2 cut(s)	509, 729
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	2 cut(s)	150, 641
MalI	GATC	5 cut(s)	112, 310, 393, 414, 706
MboI	GATC	5 cut(s)	110, 308, 391, 412, 704
MboII	GAAGA	5 cut(s)	25, 301, 485, 554, 728
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	6 cut(s)	82, 191, 333, 603, 678, 817
MluNI	TGGCCA	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	6 cut(s)	3, 314, 405, 597, 732, 759
Mox20I	TGGCCA	1 cut(s)	773
MroXI	GAANNNNTTC	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	2 cut(s)	227, 653
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	773
MspI	CCGG	2 cut(s)	405, 752
MspR9I	CCNGG	2 cut(s)	306, 753
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	230, 239, 550
NciI	CCSGG	1 cut(s)	753
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	5 cut(s)	110, 308, 391, 412, 704
NlaIII	CATG	8 cut(s)	22, 221, 304, 447, 469, 548, 560, 580
NlaIV	GGNNCC	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	641
NspI	RCATGY	2 cut(s)	304, 560
OliI	CACNNNNGTG	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	3 cut(s)	184, 373, 693
PkrI	GCNGC	3 cut(s)	555, 582, 585
Ppu21I	YACGTR	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	1 cut(s)	719
PstI	CTGCAG	1 cut(s)	585
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	139, 275
RsaNI	GTAC	2 cut(s)	138, 274
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	227, 653
SatI	GCNGC	3 cut(s)	554, 581, 584
Sau3AI	GATC	5 cut(s)	110, 308, 391, 412, 704
Sau96I	GGNCC	1 cut(s)	719
ScrFI	CCNGG	2 cut(s)	306, 753
SduI	GDGCHC	1 cut(s)	666
SetI	ASST	7 cut(s)	133, 496, 666, 718, 724, 730, 802
SfaNI	GCATC	4 cut(s)	165, 229, 466, 542
SfcI	CTRYAG	3 cut(s)	106, 528, 581
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	6 cut(s)	82, 191, 333, 603, 678, 817
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	2 cut(s)	509, 729
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	304, 751
StyI	CCWWGG	1 cut(s)	590
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	3 cut(s)	171, 331, 696
TasI	AATT	6 cut(s)	82, 191, 333, 603, 678, 817
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	3 cut(s)	184, 373, 693
Tru1I	TTAA	2 cut(s)	227, 653
Tru9I	TTAA	2 cut(s)	227, 653
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	3 cut(s)	553, 580, 583
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	4 cut(s)	308, 464, 482, 565
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	2 cut(s)	191, 333
XceI	RCATGY	2 cut(s)	304, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	2 cut(s)	509, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.