pycom12g08790

Phosphoesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011842
Physical Location & Seq
Reverse (-)
10432197 .. 10437832
5636 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g08790.2

Sequence Viewer

Length: 957 bp
ATGGCAGCCACCGCCGCCATTTCCGTCCTCCTCCTGCTGCTCGTAGGACTCTATAGTCAAGTCCATGCCAATCCCATAAAAAACATAGTTGTTCTAGTGATGGAGAACAGGTCGTTCGACCACATGCTAGGGTGGATGAAGAAAATCAACCCAGAAATCAACGGAGTGGACGGCTCCGAGTCCAACCCTCTCTCCACCACCGACCCCAACTCCAAGCGCTTCTTCTTCAAGAACGAGTCTCACTATGTGGACCCTGATCCTGGCCACTCCTTCCAAGCCATCCGAGAGCAGATATTCGGGTCGGATAACACGTCGGCCGACCGGCCTCCCATGAATGGGTTTGCTCAGCAGGCTTACTCCATGGACAACACCACCGCCATGTCTCAGGACGTTATGAATGGATTCAATCCTGATATGGTTGCCATCTACAAAACTCTTGTTTCTGAATTTGCAGTCTTTGACAGGTGGTTCGCCTCACTGCCAACCTCAACACAGCCGAATCGGCTCTACGTGCATTCAGGGACATCAGCTGGTGCAACAAGCAACATCCCAGCCCTTCTCGCCAAGGGTTACCCTCAAAGAACCATCTTCCAGAACCTCGATGACGCCGGAATATCCTTCGGGATATACTACCAAAACATTCCATCTACATTGTTCTACAGGAACTTGAGGAAGCTCAAGTACATATTCAAGTTCCATCGGTACAAAACCTTCAAGAGACATGCAAACGAAGGGAAACTACCAGGGTACACTGTCATAGAACAAAGGTACTTTGACATCAAGAGTGCACCTGCAAATGACGATCATCCCTCCCATGACGTGTACCACGGGCAAATGTTTGTAAAGGAGGTGTACGAGACACTAAGAGCAAGCCCTCAGTGGAACGACACCCTATTCATCATCACGTATGATGAACATGGGGGTTTCTATCGATCATGTGTCTACACCGGTTCGTGA

Protein Analysis

319

Amino Acids

36.08

Weight (kDa)

6.83

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26870
fragaria_vesca FvH4_3g27850
malus_domestica MD03G1165700.v1.1 MD11G1185000.v1.1
prunus_persica Prupe.4G266000_v2.0.a1
pyrus_communis pycom03g12040 pycom12g08790
rosa_chinensis RchiOBHm_Chr5g0050581
rosa_laevigata RLG00000034707 RLG00000034708 RLG00000034709
rosa_multiflora Rmu_sc0001954.1_g000003
rosa_roxburghii Rroxscaffold_1G00030270
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5AG333700 Rh5BG343500 Rh5CG371100 Rh5DG356300
rosa_wichuraiana Rw5G031500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 799
AasI GACNNNNNNGTC 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 799
AccI GTMKAC 1 cut(s) 942
AciI CCGC 3 cut(s) 12, 15, 375
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 2 cut(s) 262, 315
AcsI RAATTY 1 cut(s) 446
AcyI GRCGYC 1 cut(s) 606
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 6 cut(s) 683, 704, 749, 770, 824, 854
AfeI AGCGCT 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 260, 335, 336
AflIII ACRYGT 2 cut(s) 309, 819
AgeI ACCGGT 1 cut(s) 947
AgsI TTSAA 4 cut(s) 229, 406, 691, 715
AjiI CACGTC 2 cut(s) 312, 820
AjnI CCWGG 2 cut(s) 259, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 2 cut(s) 530, 676
AluI AGCT 2 cut(s) 530, 676
Alw21I GWGCWC 1 cut(s) 790
Alw26I GTCTC 4 cut(s) 243, 387, 712, 851
Alw44I GTGCAC 1 cut(s) 786
AlwI GGATC 1 cut(s) 251
Aor51HI AGCGCT 1 cut(s) 218
AoxI GGCC 3 cut(s) 262, 315, 323
ApaLI GTGCAC 1 cut(s) 786
ApeKI GCWGC 2 cut(s) 5, 37
ApoI RAATTY 1 cut(s) 446
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AsiGI ACCGGT 1 cut(s) 947
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 250
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 790
BalI TGGCCA 1 cut(s) 264
BarI GAAGNNNNNNTAC 6 cut(s) 665, 695, 697, 723, 727, 755
Bbv12I GWGCWC 1 cut(s) 790
BbvI GCAGC 2 cut(s) 17, 24
BccI CCATC 6 cut(s) 94, 287, 431, 593, 652, 705
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 261, 744
BcoDI GTCTC 4 cut(s) 243, 387, 712, 851
BfaI CTAG 2 cut(s) 95, 128
BfmI CTRYAG 2 cut(s) 52, 658
BfoI RGCGCY 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 799
BglI GCCNNNNNGGC 1 cut(s) 502
BisI GCNGC 3 cut(s) 6, 15, 38
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 3 cut(s) 7, 16, 39
Bme1390I CCNGG 2 cut(s) 261, 744
Bme18I GGWCC 1 cut(s) 250
BmgBI CACGTC 2 cut(s) 312, 820
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 175, 252
BmrFI CCNGG 2 cut(s) 261, 744
Bpu1102I GCTNAGC 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 662, 688
Bsa29I ATCGAT 1 cut(s) 931
BsaAI YACGTR 2 cut(s) 511, 906
BsaHI GRCGYC 1 cut(s) 606
BsaJI CCNNGG 4 cut(s) 360, 564, 743, 826
BsaWI WCCGGW 1 cut(s) 947
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 176, 194, 206, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 335, 336
Bse118I RCCGGY 2 cut(s) 321, 947
BseBI CCWGG 2 cut(s) 261, 744
BseCI ATCGAT 1 cut(s) 931
BseDI CCNNGG 4 cut(s) 360, 564, 743, 826
BseGI GGATG 4 cut(s) 141, 279, 546, 805
BseLI CCNNNNNNNGG 3 cut(s) 260, 335, 336
BseMII CTCAG 3 cut(s) 359, 398, 890
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 790
BseX3I CGGCCG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 17, 24
BseYI CCCAGC 1 cut(s) 550
Bsh1285I CGRYCG 2 cut(s) 318, 322
BshFI GGCC 3 cut(s) 264, 317, 325
BshTI ACCGGT 1 cut(s) 947
BshVI ATCGAT 1 cut(s) 931
BsiEI CGRYCG 2 cut(s) 318, 322
BsiHKAI GWGCWC 1 cut(s) 790
BsiSI CCGG 3 cut(s) 322, 609, 948
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 3 cut(s) 260, 335, 336
BsmAI GTCTC 4 cut(s) 243, 387, 712, 851
BsmFI GGGAC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 3 cut(s) 264, 317, 325
Bsp1286I GDGCHC 1 cut(s) 790
Bsp143I GATC 3 cut(s) 256, 802, 932
Bsp1720I GCTNAGC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 3 cut(s) 12, 15, 375
BspANI GGCC 3 cut(s) 264, 317, 325
BspCNI CTCAG 3 cut(s) 358, 397, 889
BspDI ATCGAT 1 cut(s) 931
BspLI GGNNCC 2 cut(s) 175, 252
BspMI ACCTGC 1 cut(s) 799
BspPI GGATC 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 321, 947
BssAI RCCGGY 2 cut(s) 321, 947
BssECI CCNNGG 4 cut(s) 360, 564, 743, 826
BssMI GATC 3 cut(s) 256, 802, 932
BssNI GRCGYC 1 cut(s) 606
BssT1I CCWWGG 2 cut(s) 360, 564
Bst2UI CCWGG 2 cut(s) 261, 744
Bst4CI ACNGT 1 cut(s) 754
BstACI GRCGYC 1 cut(s) 606
BstBAI YACGTR 2 cut(s) 511, 906
BstC8I GCNNGC 2 cut(s) 351, 871
BstDEI CTNAG 4 cut(s) 345, 384, 863, 876
BstDSI CCRYGG 2 cut(s) 360, 826
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 4 cut(s) 141, 279, 546, 805
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 259, 805, 935
BstMAI GTCTC 4 cut(s) 243, 387, 712, 851
BstMBI GATC 3 cut(s) 256, 802, 932
BstMCI CGRYCG 2 cut(s) 318, 322
BstMWI GCNNNNNNNGC 6 cut(s) 11, 14, 350, 502, 511, 560
BstNI CCWGG 2 cut(s) 261, 744
BstNSI RCATGY 2 cut(s) 127, 725
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 259, 742
BstSFI CTRYAG 2 cut(s) 52, 658
BstSLI GKGCMC 1 cut(s) 790
BstV1I GCAGC 2 cut(s) 17, 24
BstZI CGGCCG 1 cut(s) 315
Bsu15I ATCGAT 1 cut(s) 931
BsuRI GGCC 3 cut(s) 264, 317, 325
BsuTUI ATCGAT 1 cut(s) 931
BtgI CCRYGG 2 cut(s) 360, 826
BtrI CACGTC 2 cut(s) 312, 820
BtsCI GGATG 4 cut(s) 141, 279, 546, 805
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 3 cut(s) 476, 750, 884
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 2 cut(s) 351, 871
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 2 cut(s) 321, 947
Cfr13I GGNCC 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 931
CseI GACGC 1 cut(s) 614
Csp6I GTAC 6 cut(s) 682, 703, 748, 769, 823, 853
CspAI ACCGGT 1 cut(s) 947
CviAII CATG 9 cut(s) 65, 124, 331, 361, 379, 722, 815, 917, 936
CviQI GTAC 6 cut(s) 682, 703, 748, 769, 823, 853
DdeI CTNAG 4 cut(s) 345, 384, 863, 876
DpnI GATC 3 cut(s) 258, 804, 934
DpnII GATC 3 cut(s) 256, 802, 932
DraIII CACNNNGTG 1 cut(s) 247
DrdI GACNNNNNNGTC 1 cut(s) 54
DseDI GACNNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 2 cut(s) 262, 315
EagI CGGCCG 1 cut(s) 315
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 2 cut(s) 360, 564
Eco47I GGWCC 1 cut(s) 250
Eco47III AGCGCT 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 2 cut(s) 259, 742
EcoT14I CCWWGG 2 cut(s) 360, 564
ErhI CCWWGG 2 cut(s) 360, 564
FaeI CATG 9 cut(s) 68, 127, 334, 364, 382, 725, 818, 920, 939
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 1 cut(s) 535
FatI CATG 9 cut(s) 64, 123, 330, 360, 378, 721, 814, 916, 935
FblI GTMKAC 1 cut(s) 942
Fnu4HI GCNGC 3 cut(s) 6, 15, 38
FokI GGATG 4 cut(s) 148, 266, 533, 792
Fsp4HI GCNGC 3 cut(s) 6, 15, 38
FspBI CTAG 2 cut(s) 95, 128
GlaI GCGC 1 cut(s) 218
GluI GCNGC 3 cut(s) 6, 15, 38
GsaI CCCAGC 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 3 cut(s) 264, 317, 325
HapII CCGG 3 cut(s) 322, 609, 948
HgaI GACGC 1 cut(s) 614
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 9 cut(s) 68, 127, 334, 364, 382, 725, 818, 920, 939
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 5 cut(s) 48, 179, 236, 402, 499
HpaII CCGG 3 cut(s) 322, 609, 948
Hpy166II GTNNAC 7 cut(s) 169, 250, 750, 788, 823, 853, 943
Hpy188I TCNGA 4 cut(s) 178, 284, 304, 445
Hpy188III TCNNGA 8 cut(s) 229, 386, 410, 592, 622, 715, 781, 954
Hpy8I GTNNAC 7 cut(s) 169, 250, 750, 788, 823, 853, 943
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 5 cut(s) 280, 566, 628, 721, 725
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4IV ACGT 5 cut(s) 311, 390, 510, 819, 905
HpyCH4V TGCA 6 cut(s) 452, 514, 536, 725, 788, 794
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 14, 350, 502, 511, 560
HpyF3I CTNAG 4 cut(s) 345, 384, 863, 876
HpySE526I ACGT 5 cut(s) 311, 390, 510, 819, 905
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 9 cut(s) 68, 127, 334, 364, 382, 725, 818, 920, 939
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 256, 802, 932
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 2 cut(s) 17, 24
MaeI CTAG 2 cut(s) 95, 128
MaeII ACGT 5 cut(s) 311, 390, 510, 819, 905
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 258, 804, 934
MboI GATC 3 cut(s) 256, 802, 932
MboII GAAGA 4 cut(s) 151, 214, 217, 580
MhlI GDGCHC 1 cut(s) 790
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 1 cut(s) 446
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 3 cut(s) 42, 188, 245
MmeI TCCRAC 2 cut(s) 207, 282
Mox20I TGGCCA 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 401
MscI TGGCCA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 3 cut(s) 322, 609, 948
MspR9I CCNGG 2 cut(s) 261, 744
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 2 cut(s) 261, 744
MwoI GCNNNNNNNGC 6 cut(s) 11, 14, 350, 502, 511, 560
NcoI CCATGG 1 cut(s) 360
NdeII GATC 3 cut(s) 256, 802, 932
NlaIII CATG 9 cut(s) 68, 127, 334, 364, 382, 725, 818, 920, 939
NlaIV GGNNCC 2 cut(s) 175, 252
NspI RCATGY 2 cut(s) 127, 725
PaqCI CACCTGC 1 cut(s) 799
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PctI GAATGC 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 402, 499
PinAI ACCGGT 1 cut(s) 947
PkrI GCNGC 3 cut(s) 7, 16, 39
PleI GAGTC 3 cut(s) 42, 187, 244
PpsI GAGTC 3 cut(s) 42, 187, 244
Ppu21I YACGTR 2 cut(s) 511, 906
Psp6I CCWGG 2 cut(s) 259, 742
PspEI GGTNACC 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 2 cut(s) 259, 742
PspN4I GGNNCC 2 cut(s) 175, 252
PspPI GGNCC 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 6 cut(s) 683, 704, 749, 770, 824, 854
RsaNI GTAC 6 cut(s) 682, 703, 748, 769, 823, 853
RseI CAYNNNNRTG 1 cut(s) 377
SatI GCNGC 3 cut(s) 6, 15, 38
Sau3AI GATC 3 cut(s) 256, 802, 932
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 3 cut(s) 42, 188, 245
ScrFI CCNGG 2 cut(s) 261, 744
SduI GDGCHC 1 cut(s) 790
SfcI CTRYAG 2 cut(s) 52, 658
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 667, 677
SmoI CTYRAG 2 cut(s) 667, 677
Sse9I AATT 1 cut(s) 446
SsiI CCGC 3 cut(s) 12, 15, 375
SspMI CTAG 2 cut(s) 95, 128
StyD4I CCNGG 2 cut(s) 259, 742
StyI CCWWGG 2 cut(s) 360, 564
TaaI ACNGT 1 cut(s) 754
TaiI ACGT 5 cut(s) 314, 393, 513, 822, 908
TaqI TCGA 3 cut(s) 117, 600, 931
TasI AATT 1 cut(s) 446
TatI WGTACW 1 cut(s) 681
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 402, 499
TscAI CASTG 3 cut(s) 483, 757, 884
TseI GCWGC 2 cut(s) 5, 37
TspDTI ATGAA 5 cut(s) 152, 347, 410, 886, 927
TspGWI ACGGA 2 cut(s) 13, 177
TspRI CASTG 3 cut(s) 483, 757, 884
VneI GTGCAC 1 cut(s) 786
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 1 cut(s) 446
XceI RCATGY 2 cut(s) 127, 725
XmiI GTMKAC 1 cut(s) 942
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 2 cut(s) 95, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.