Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008554

Physical Location & Seq

Genomic Coordinates Forward (+)

12538918 .. 12539253

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGAATCTCAGTCCCCAGCTTTTTCGAAGAGCGAAAGTTCCCTTTCGTTTTCACACTCTTACTCCCACTCACCTGCATCACCATCATCCTCTTCACCAACGCCACCACCAACGTCCCTTACACTCACTTCTTTTACTCCGATCTCCAGACCTCCCCCTCCTCCTCCCAACCCATCTCTCCTCCCGCACCCTCCAACCCCGCTGTGCCTGGAGCCGGTTCCCAAAGGGTACAAGGTGCCGGTTCCGTGGCCTCAGAGCAGGGACATGGTGAGATTTGTACTTTGGTAAGATTTGTTTCTGGCTTTTCTCAAATGGGTTTTGTTGATTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

112

Amino Acids

11.89

Weight (kDa)

5.43

Isoelectric Point (pI)

59.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40280
fragaria_vesca	FvH4_7g24980
malus_domestica	MD01G1157200.v1.1 MD07G1226000.v1.1
prunus_persica	Prupe.2G255100_v2.0.a1 Prupe.2G255100_v2.0.a1 Prupe.2G255100_v2.0.a1
pyrus_communis	pycom01g17400 pycom03g12170 pycom07g20440
rosa_chinensis	RchiOBHm_Chr1g0370901
rosa_laevigata	RLG00000027000
rosa_multiflora	Rmu_co8467341.1_g000001 Rmu_sc0001018.1_g000001 Rmu_sc0022073.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286140
rosa_rugosa	Rorug01G0360100 Rorug01G0360100
rosa_samantha	Rh1AG370100 Rh1BG333700 Rh1CG347000 Rh1DG364900
rosa_wichuraiana	Rw1G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	236
AciI	CCGC	2 cut(s)	186, 201
AfaI	GTAC	2 cut(s)	231, 280
AfiI	CCNNNNNNNGG	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
AoxI	GGCC	1 cut(s)	249
AsuHPI	GGTGA	4 cut(s)	64, 73, 88, 281
AsuII	TTCGAA	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	236
BccI	CCATC	2 cut(s)	92, 182
BciT130I	CCWGG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	4 cut(s)	214, 220, 238, 244
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	131, 231
Bpu14I	TTCGAA	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	2 cut(s)	215, 239
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	2 cut(s)	24, 267
BseRI	GAGGAG	3 cut(s)	151, 154, 171
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	216, 240
BslFI	GGGAC	2 cut(s)	101, 276
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	101, 276
BsnI	GGCC	1 cut(s)	251
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	186, 201
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	23, 266
BspLI	GGNNCC	4 cut(s)	214, 220, 238, 244
BspMI	ACCTGC	1 cut(s)	83
BspQI	GCTCTTC	1 cut(s)	24
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	215, 239
BssAI	RCCGGY	2 cut(s)	215, 239
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	210
Bst6I	CTCTTC	2 cut(s)	24, 98
BstBI	TTCGAA	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	10, 253
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	83
Cfr10I	RCCGGY	2 cut(s)	215, 239
Csp6I	GTAC	2 cut(s)	230, 279
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	4 cut(s)	21, 215, 251, 303
CviKI_1	RGCY	4 cut(s)	21, 215, 251, 303
CviQI	GTAC	2 cut(s)	230, 279
DdeI	CTNAG	2 cut(s)	10, 253
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	24, 98
EarI	CTCTTC	2 cut(s)	24, 98
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	269
FaiI	YATR	1 cut(s)	267
FaqI	GGGAC	2 cut(s)	101, 276
FatI	CATG	1 cut(s)	265
FauI	CCCGC	2 cut(s)	193, 208
FokI	GGATG	1 cut(s)	74
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	131, 231
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	216, 240
Hin1II	CATG	1 cut(s)	269
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	2 cut(s)	216, 240
HphI	GGTGA	4 cut(s)	64, 73, 88, 281
Hpy188I	TCNGA	2 cut(s)	142, 256
Hpy188III	TCNNGA	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	10, 253
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	142
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	9 cut(s)	31, 88, 161, 195, 222, 229, 245, 253, 285
LweI	GCATC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	41, 85
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	101, 163, 169, 172, 175, 192, 202, 262
MseI	TTAA	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	216, 240
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	4 cut(s)	214, 220, 238, 244
NspV	TTCGAA	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	214, 220, 238, 244
RsaI	GTAC	2 cut(s)	231, 280
RsaNI	GTAC	2 cut(s)	230, 279
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	334
Sau3AI	GATC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	5 cut(s)	23, 77, 117, 155, 238
SfaNI	GCATC	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	27
SsiI	CCGC	2 cut(s)	186, 201
StyD4I	CCNGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	27
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TspGWI	ACGGA	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.