Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467341.1

Orthogroup ID

OG0008554

Physical Location & Seq

Genomic Coordinates Reverse (-)

240 .. 1879

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467341.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggtttttattgctgcaggcgggaaaccactgttggagctcaacagggttcttaggcctgggggctttttcatatggtctgctacaccagtttatcgtgatgataacgaaagagatcgcggagtatggaaatctatggtggctctgacaacagcaatgtgctggaaggttgttgctaagagtcttgattcaactggaattgggctcgtaatatatcaaaagcctgactctacttcctgctacagtgaacgccaacaacatgatccacctgtgtgtgatcctaaagacaagaaaactagttcatggtatgtgccacttagtcgttgcctttcccaactacctggatatagttggcccgcgccatggccgcagaggcttatcagtaaacctcaaagcttatcgcctgagccagaatccgaggagaagttctacaaggacactaaagtttggtctgcacttgtgtcaaattcctatcggaataatgctgctataaactggtcaagtgtgcggaatgtaatggatatgaatgctggttatggaggatttgctgcggcgcttatcgatctacctctctgggtaatgaatgtcatcccggttcatgtaccagatactctgcctattatatttgatagaggattgattggattctatcatgactggtgcgagtctttgagtacctaccctcgaacctatgatctactgcattcaagttttctctttcaaagcctttctcaaagatgcgacattgtagaggtagtggtagagatggatcgcatactgaggcctggtggatatatagtaattcaagatacaatggaaatgatagacaagctgaggccacttttgcattcgcttcaatggtcttcaaccgtccatcagggtcaatttcttattggtcagaaaggtttctggcgtccagcaagaggttcaagtagatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

313

Amino Acids

35.57

Weight (kDa)

8.45

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40280
fragaria_vesca	FvH4_7g24980
malus_domestica	MD01G1157200.v1.1 MD07G1226000.v1.1
prunus_persica	Prupe.2G255100_v2.0.a1 Prupe.2G255100_v2.0.a1 Prupe.2G255100_v2.0.a1
pyrus_communis	pycom01g17400 pycom03g12170 pycom07g20440
rosa_chinensis	RchiOBHm_Chr1g0370901
rosa_laevigata	RLG00000027000
rosa_multiflora	Rmu_co8467341.1_g000001 Rmu_sc0001018.1_g000001 Rmu_sc0022073.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286140
rosa_rugosa	Rorug01G0360100 Rorug01G0360100
rosa_samantha	Rh1AG370100 Rh1BG333700 Rh1CG347000 Rh1DG364900
rosa_wichuraiana	Rw1G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	120, 359
AciI	CCGC	6 cut(s)	21, 120, 357, 368, 508, 551
AclWI	GGATC	3 cut(s)	257, 272, 777
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	466
AcyI	GRCGYC	1 cut(s)	913
AfaI	GTAC	2 cut(s)	603, 676
AfiI	CCNNNNNNNGG	2 cut(s)	363, 923
AgsI	TTSAA	7 cut(s)	192, 708, 722, 806, 857, 867, 930
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	3 cut(s)	58, 340, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AleI	CACNNNNGTG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	40, 396, 832
AluI	AGCT	3 cut(s)	40, 396, 832
Alw21I	GWGCWC	1 cut(s)	42
AlwI	GGATC	3 cut(s)	257, 272, 777
AoxI	GGCC	5 cut(s)	56, 353, 365, 782, 836
ApeKI	GCWGC	3 cut(s)	14, 485, 548
ApoI	RAATTY	1 cut(s)	466
Asp700I	GAANNNNTTC	1 cut(s)	905
AspLEI	GCGC	2 cut(s)	361, 556
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	593
BanII	GRGCYC	2 cut(s)	42, 207
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	833
BbvI	GCAGC	2 cut(s)	472, 535
BccI	CCATC	2 cut(s)	760, 882
BciT130I	CCWGG	3 cut(s)	60, 342, 786
BcnI	CCSGG	1 cut(s)	593
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	15, 241
BfoI	RGCGCY	1 cut(s)	557
BglI	GCCNNNNNGGC	1 cut(s)	373
BisI	GCNGC	5 cut(s)	15, 368, 486, 549, 552
BlsI	GCNGC	5 cut(s)	16, 369, 487, 550, 553
Bme1390I	CCNGG	4 cut(s)	60, 342, 593, 786
BmgT120I	GGNCC	1 cut(s)	354
BmrFI	CCNGG	4 cut(s)	60, 342, 593, 786
BmsI	GCATC	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	855
Bpu10I	CCTNAGC	2 cut(s)	405, 833
BpuMI	CCSGG	1 cut(s)	593
Bsa29I	ATCGAT	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	913
BsaJI	CCNNGG	3 cut(s)	59, 362, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 923
Bse1I	ACTGG	4 cut(s)	89, 199, 500, 662
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	60, 342, 786
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	3 cut(s)	59, 362, 417
BseGI	GGATG	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	363, 923
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	396, 770, 824
BseNI	ACTGG	4 cut(s)	89, 199, 500, 662
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	472, 535
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	2 cut(s)	120, 359
BshFI	GGCC	5 cut(s)	58, 355, 367, 784, 838
BshVI	ATCGAT	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	363, 923
BsmI	GAATGC	3 cut(s)	532, 703, 847
BsnI	GGCC	5 cut(s)	58, 355, 367, 784, 838
Bsp1286I	GDGCHC	2 cut(s)	42, 207
Bsp143I	GATC	7 cut(s)	115, 262, 277, 562, 694, 769, 935
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	6 cut(s)	21, 120, 357, 368, 508, 551
BspANI	GGCC	5 cut(s)	58, 355, 367, 784, 838
BspCNI	CTCAG	3 cut(s)	397, 771, 825
BspDI	ATCGAT	1 cut(s)	561
BspFNI	CGCG	2 cut(s)	120, 359
BspHI	TCATGA	2 cut(s)	652, 938
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	3 cut(s)	257, 272, 777
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	4 cut(s)	89, 199, 500, 662
BssECI	CCNNGG	3 cut(s)	59, 362, 417
BssMI	GATC	7 cut(s)	115, 262, 277, 562, 694, 769, 935
BssNI	GRCGYC	1 cut(s)	913
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	3 cut(s)	60, 342, 786
Bst4CI	ACNGT	3 cut(s)	33, 245, 871
BstACI	GRCGYC	1 cut(s)	913
BstC8I	GCNNGC	2 cut(s)	19, 357
BstDEI	CTNAG	6 cut(s)	53, 177, 317, 405, 779, 833
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	588
BstFNI	CGCG	2 cut(s)	120, 359
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	2 cut(s)	361, 556
BstKTI	GATC	7 cut(s)	118, 265, 280, 565, 697, 772, 938
BstMBI	GATC	7 cut(s)	115, 262, 277, 562, 694, 769, 935
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 373, 844
BstNI	CCWGG	3 cut(s)	60, 342, 786
BstSCI	CCNGG	4 cut(s)	58, 340, 591, 784
BstSFI	CTRYAG	2 cut(s)	15, 241
BstUI	CGCG	2 cut(s)	120, 359
BstV1I	GCAGC	2 cut(s)	472, 535
BstV2I	GAAGAC	1 cut(s)	855
BstXI	CCANNNNNNTGG	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	561
BsuRI	GGCC	5 cut(s)	58, 355, 367, 784, 838
BsuTUI	ATCGAT	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	29, 250
Cac8I	GCNNGC	2 cut(s)	19, 357
CciI	TCATGA	2 cut(s)	652, 938
CfoI	GCGC	2 cut(s)	361, 556
Cfr13I	GGNCC	1 cut(s)	354
ClaI	ATCGAT	1 cut(s)	561
CseI	GACGC	1 cut(s)	902
Csp6I	GTAC	2 cut(s)	602, 675
CviAII	CATG	6 cut(s)	260, 303, 363, 599, 653, 939
CviQI	GTAC	2 cut(s)	602, 675
DdeI	CTNAG	6 cut(s)	53, 177, 317, 405, 779, 833
DpnI	GATC	7 cut(s)	117, 264, 279, 564, 696, 771, 937
DpnII	GATC	7 cut(s)	115, 262, 277, 562, 694, 769, 935
EaeI	YGGCCR	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	362
Eco147I	AGGCCT	2 cut(s)	58, 784
Eco24I	GRGCYC	2 cut(s)	42, 207
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	3 cut(s)	58, 340, 784
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	2 cut(s)	42, 207
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	6 cut(s)	263, 306, 366, 602, 656, 942
FatI	CATG	6 cut(s)	259, 302, 362, 598, 652, 938
FauI	CCCGC	2 cut(s)	14, 364
FauNDI	CATATG	1 cut(s)	74
Fnu4HI	GCNGC	5 cut(s)	15, 368, 486, 549, 552
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	2 cut(s)	42, 207
Fsp4HI	GCNGC	5 cut(s)	15, 368, 486, 549, 552
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	360, 555
GluI	GCNGC	5 cut(s)	15, 368, 486, 549, 552
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	5 cut(s)	58, 355, 367, 784, 838
HapII	CCGG	1 cut(s)	593
HgaI	GACGC	1 cut(s)	902
HhaI	GCGC	2 cut(s)	361, 556
Hin1I	GRCGYC	1 cut(s)	913
Hin1II	CATG	6 cut(s)	263, 306, 366, 602, 656, 942
Hin6I	GCGC	2 cut(s)	359, 554
HinP1I	GCGC	2 cut(s)	359, 554
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	6 cut(s)	181, 188, 227, 413, 645, 665
HpaII	CCGG	1 cut(s)	593
Hpy166II	GTNNAC	2 cut(s)	248, 386
Hpy188I	TCNGA	4 cut(s)	147, 418, 477, 900
Hpy188III	TCNNGA	5 cut(s)	98, 185, 653, 806, 939
Hpy8I	GTNNAC	2 cut(s)	248, 386
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	3 cut(s)	33, 245, 871
HpyCH4V	TGCA	4 cut(s)	17, 455, 703, 847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 373, 844
HpyF3I	CTNAG	6 cut(s)	53, 177, 317, 405, 779, 833
Hsp92I	GRCGYC	1 cut(s)	913
Hsp92II	CATG	6 cut(s)	263, 306, 366, 602, 656, 942
HspAI	GCGC	2 cut(s)	359, 554
Kzo9I	GATC	7 cut(s)	115, 262, 277, 562, 694, 769, 935
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	2 cut(s)	472, 535
LweI	GCATC	1 cut(s)	728
MaeI	CTAG	1 cut(s)	297
MalI	GATC	7 cut(s)	117, 264, 279, 564, 696, 771, 937
MboI	GATC	7 cut(s)	115, 262, 277, 562, 694, 769, 935
MboII	GAAGA	1 cut(s)	855
MhlI	GDGCHC	2 cut(s)	42, 207
MluCI	AATT	4 cut(s)	198, 466, 801, 884
MlyI	GAGTC	3 cut(s)	190, 221, 674
MmeI	TCCRAC	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	905
MslI	CAYNNNNRTG	1 cut(s)	271
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	4 cut(s)	60, 342, 593, 786
Mva1269I	GAATGC	3 cut(s)	532, 703, 847
MvaI	CCWGG	3 cut(s)	60, 342, 786
MvnI	CGCG	2 cut(s)	120, 359
MwoI	GCNNNNNNNGC	3 cut(s)	367, 373, 844
NciI	CCSGG	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	362
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	7 cut(s)	115, 262, 277, 562, 694, 769, 935
NlaIII	CATG	6 cut(s)	263, 306, 366, 602, 656, 942
OliI	CACNNNNGTG	1 cut(s)	271
PagI	TCATGA	2 cut(s)	652, 938
PceI	AGGCCT	2 cut(s)	58, 784
PctI	GAATGC	3 cut(s)	532, 703, 847
PdmI	GAANNNNTTC	1 cut(s)	905
PfeI	GAWTC	3 cut(s)	188, 413, 645
PkrI	GCNGC	5 cut(s)	16, 369, 487, 550, 553
PleI	GAGTC	3 cut(s)	189, 221, 673
PpsI	GAGTC	3 cut(s)	189, 221, 673
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	3 cut(s)	58, 340, 784
PspGI	CCWGG	3 cut(s)	58, 340, 784
PspPI	GGNCC	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	603, 676
RsaNI	GTAC	2 cut(s)	602, 675
RseI	CAYNNNNRTG	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	42
SatI	GCNGC	5 cut(s)	15, 368, 486, 549, 552
Sau3AI	GATC	7 cut(s)	115, 262, 277, 562, 694, 769, 935
Sau96I	GGNCC	1 cut(s)	354
SchI	GAGTC	3 cut(s)	190, 221, 674
ScrFI	CCNGG	4 cut(s)	60, 342, 593, 786
SduI	GDGCHC	2 cut(s)	42, 207
SfaNI	GCATC	1 cut(s)	728
SfcI	CTRYAG	2 cut(s)	15, 241
SmiMI	CAYNNNNRTG	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	4 cut(s)	198, 466, 801, 884
SseBI	AGGCCT	2 cut(s)	58, 784
SsiI	CCGC	6 cut(s)	21, 120, 357, 368, 508, 551
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	42
StuI	AGGCCT	2 cut(s)	58, 784
StyD4I	CCNGG	4 cut(s)	58, 340, 591, 784
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	33, 245, 871
TaqI	TCGA	2 cut(s)	561, 685
TasI	AATT	4 cut(s)	198, 466, 801, 884
TauI	GCSGC	2 cut(s)	370, 554
TfiI	GAWTC	3 cut(s)	188, 413, 645
TscAI	CASTG	2 cut(s)	36, 250
TseI	GCWGC	3 cut(s)	14, 485, 548
TspDTI	ATGAA	5 cut(s)	61, 291, 539, 587, 596
TspRI	CASTG	2 cut(s)	36, 250
XapI	RAATTY	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	905
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.