Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008554

Physical Location & Seq

Genomic Coordinates Forward (+)

47577394 .. 47580357

Gene Structure 2964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0360100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTGCACCACCAAGGGCTCGCGCGGATTACGATTATCTGATCAAGCTCCTCCTCATTGGCGACAGTGGTGTTGGAAAGAGTTGCCTGCTTTTACGATTCTCTGATGGCTCCTTCACAACCAGTTTCATTACCACTATTGGAATTGACTTCAAGATAAGAACCATTGATCTTGATGGCAAACGAATTAAGTTGCAAATCTGGGACACAGCTGGCCAGGAAAGGTTCCGGACAATCACGACAGCTTACTATCGAGGAGCCATGGGTATTTTGTTGGTGTATGATGTAACTGATGAGTCATCTTTCAACAACATTAGGAACTGGATTCGTAACATTGAACAACATGCTTCTGACAATGTCAACAAGGTTCTGGTGGGAAACAAGGCTGATATGGATGAAAGCAAAAGGGCCGTGCCTGCATCTAAAGGTCAAGCTCTTGCTGATGAGTATGGCATCAAGTTCTTTGAAACTAGTGCAAAGACAAACTTGAATGTGGAGGAGGTTTTCTTTTCAATAGCCAGGGATATCAAGCAGAGACTTGCAGAATCTGATGCCAGGGGCACTGAGCCGCAAGCACTCAAGATGAATGAAGTAGGCAATGGAGGCGGTCAAGCAGTGCAAAAATCATCATGCTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

213

Amino Acids

23.55

Weight (kDa)

7.65

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 145	8.7e-15	ADP-ribosylation factor family
Ras	PF00071	16 - 177	6.5e-68	Ras family
Roc	PF08477	16 - 130	9.6e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	48 - 172	1.8e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40280
fragaria_vesca	FvH4_7g24980
malus_domestica	MD01G1157200.v1.1 MD07G1226000.v1.1
prunus_persica	Prupe.2G255100_v2.0.a1 Prupe.2G255100_v2.0.a1 Prupe.2G255100_v2.0.a1
pyrus_communis	pycom01g17400 pycom03g12170 pycom07g20440
rosa_chinensis	RchiOBHm_Chr1g0370901
rosa_laevigata	RLG00000027000
rosa_multiflora	Rmu_co8467341.1_g000001 Rmu_sc0001018.1_g000001 Rmu_sc0022073.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286140
rosa_rugosa	Rorug01G0360100 Rorug01G0360100
rosa_samantha	Rh1AG370100 Rh1BG333700 Rh1CG347000 Rh1DG364900
rosa_wichuraiana	Rw1G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	24, 26
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	3 cut(s)	26, 569, 606
AcoI	YGGCCR	1 cut(s)	214
AgsI	TTSAA	6 cut(s)	154, 307, 338, 467, 490, 513
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	3 cut(s)	216, 518, 554
AluBI	AGCT	4 cut(s)	49, 212, 245, 434
AluI	AGCT	4 cut(s)	49, 212, 245, 434
Alw26I	GTCTC	1 cut(s)	529
AlwNI	CAGNNNCTG	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	2 cut(s)	214, 408
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	22
BccI	CCATC	2 cut(s)	101, 170
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	3 cut(s)	218, 520, 556
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	529
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	1 cut(s)	471
BisI	GCNGC	2 cut(s)	6, 569
BlsI	GCNGC	2 cut(s)	7, 570
Bme1390I	CCNGG	3 cut(s)	218, 520, 556
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	3 cut(s)	112, 227, 259
BmrFI	CCNGG	3 cut(s)	218, 520, 556
BmsI	GCATC	3 cut(s)	428, 462, 541
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	4 cut(s)	14, 261, 519, 555
BsaWI	WCCGGW	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	123, 326
Bse3DI	GCAATG	1 cut(s)	604
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	3 cut(s)	218, 520, 556
BseDI	CCNNGG	4 cut(s)	14, 261, 519, 555
BseGI	GGATG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	123, 326
BseRI	GAGGAG	4 cut(s)	41, 44, 270, 512
BseSI	GKGCMC	1 cut(s)	563
Bsh1236I	CGCG	2 cut(s)	24, 26
BshFI	GGCC	2 cut(s)	216, 410
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	529
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	216, 410
Bsp1286I	GDGCHC	2 cut(s)	22, 563
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	42, 169
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	3 cut(s)	26, 569, 606
BspANI	GGCC	2 cut(s)	216, 410
BspCNI	CTCAG	1 cut(s)	556
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	2 cut(s)	24, 26
BspLI	GGNNCC	3 cut(s)	112, 227, 259
BsrDI	GCAATG	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	123, 326
BssECI	CCNNGG	4 cut(s)	14, 261, 519, 555
BssMI	GATC	2 cut(s)	42, 169
BssT1I	CCWWGG	2 cut(s)	14, 261
Bst2UI	CCWGG	3 cut(s)	218, 520, 556
Bst4CI	ACNGT	1 cut(s)	68
BstC8I	GCNNGC	5 cut(s)	22, 89, 214, 417, 573
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	2 cut(s)	24, 26
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	45, 172
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	2 cut(s)	42, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 603
BstNI	CCWGG	3 cut(s)	218, 520, 556
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	216, 518, 554
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	2 cut(s)	24, 26
BsuRI	GGCC	2 cut(s)	216, 410
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	3 cut(s)	73, 561, 621
Cac8I	GCNNGC	5 cut(s)	22, 89, 214, 417, 573
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	408
CviAII	CATG	3 cut(s)	262, 344, 630
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	2 cut(s)	44, 171
DpnII	GATC	2 cut(s)	42, 169
EaeI	YGGCCR	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	14, 261
Eco24I	GRGCYC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	216, 518, 554
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	14, 261
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	14, 261
FaeI	CATG	3 cut(s)	265, 347, 633
FaiI	YATR	6 cut(s)	263, 282, 345, 392, 450, 631
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	3 cut(s)	261, 343, 629
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	6, 569
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	6, 569
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	2 cut(s)	6, 569
HaeIII	GGCC	2 cut(s)	216, 410
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	265, 347, 633
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	99, 296, 325, 545
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	42, 106, 352, 550
Hpy188III	TCNNGA	5 cut(s)	154, 173, 229, 238, 580
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	6 cut(s)	8, 196, 419, 476, 542, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 603
HpyF3I	CTNAG	1 cut(s)	564
Hsp92II	CATG	3 cut(s)	265, 347, 633
HspAI	GCGC	1 cut(s)	24
Kpn2I	TCCGGA	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 169
LmnI	GCTCC	3 cut(s)	54, 116, 257
LweI	GCATC	3 cut(s)	428, 462, 541
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	286, 329
MalI	GATC	2 cut(s)	44, 171
MboI	GATC	2 cut(s)	42, 169
MhlI	GDGCHC	2 cut(s)	22, 563
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	2 cut(s)	144, 186
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	62, 65, 248, 490, 493, 596
Mox20I	TGGCCA	1 cut(s)	216
MroI	TCCGGA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	3 cut(s)	218, 520, 556
MvaI	CCWGG	3 cut(s)	218, 520, 556
MvnI	CGCG	2 cut(s)	24, 26
MwoI	GCNNNNNNNGC	2 cut(s)	416, 603
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	42, 169
NlaIII	CATG	3 cut(s)	265, 347, 633
NlaIV	GGNNCC	3 cut(s)	112, 227, 259
NspI	RCATGY	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	99, 325, 545
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	7, 570
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	3 cut(s)	216, 518, 554
PspGI	CCWGG	3 cut(s)	216, 518, 554
PspN4I	GGNNCC	3 cut(s)	112, 227, 259
PspPI	GGNCC	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	548
PsyI	GACNNNGTC	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	6, 569
Sau3AI	GATC	2 cut(s)	42, 169
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	218, 520, 556
SduI	GDGCHC	2 cut(s)	22, 563
SetI	ASST	8 cut(s)	51, 214, 227, 247, 369, 430, 436, 504
SfaNI	GCATC	3 cut(s)	428, 462, 541
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	2 cut(s)	144, 186
SsiI	CCGC	3 cut(s)	26, 569, 606
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	216, 518, 554
StyI	CCWWGG	2 cut(s)	14, 261
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	253
TasI	AATT	2 cut(s)	144, 186
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	3 cut(s)	99, 325, 545
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	3 cut(s)	73, 568, 621
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	4 cut(s)	118, 411, 599, 603
TspRI	CASTG	3 cut(s)	73, 568, 621
Tth111I	GACNNNGTC	1 cut(s)	356
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.