Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022073.1

Orthogroup ID

OG0008554

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 949

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022073.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 620 bp

atgggcatctcagtgttcttgaaagagagaaaatacccgttcctcttggccctctcagtcctcttcctctgcgtcactctcctcctccttaccaactccacccccacccctctcttcctctcctcctccgatctccattcctcctcctcttctctacctcagccttccaacccaatcgcgtccaccgccaaaaacggtgccgtttccggtgtcgaactcgccgccgtgaatatatcctgggagctttgccccggccccctcgccgtcgattacatcccctgcctggacaacttcaaggccatcacggccttgacttcgcgccgccacatggagcaccgcgagcggcattgcccgacgccgagcccggggtgcctggtccctttgccgagtggctataaggtgaaggttccgtggccgaagagcagggacatgatatggtatgacaatgtacctcacccgaagctggttgagtacaagaaggatcaaaactgggtgcggaagtccggtgattatcttgtttttcctgggggtggtactcagtttaaggagggagttactcattacattgagtacattcaaaagactctgccgactattgtatgggggaagaacataagggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

207

Amino Acids

23.08

Weight (kDa)

9.19

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40280
fragaria_vesca	FvH4_7g24980
malus_domestica	MD01G1157200.v1.1 MD07G1226000.v1.1
prunus_persica	Prupe.2G255100_v2.0.a1 Prupe.2G255100_v2.0.a1 Prupe.2G255100_v2.0.a1
pyrus_communis	pycom01g17400 pycom03g12170 pycom07g20440
rosa_chinensis	RchiOBHm_Chr1g0370901
rosa_laevigata	RLG00000027000
rosa_multiflora	Rmu_co8467341.1_g000001 Rmu_sc0001018.1_g000001 Rmu_sc0022073.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286140
rosa_rugosa	Rorug01G0360100 Rorug01G0360100
rosa_samantha	Rh1AG370100 Rh1BG333700 Rh1CG347000 Rh1DG364900
rosa_wichuraiana	Rw1G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	197, 369
AccBSI	CCGCTC	1 cut(s)	343
AccII	CGCG	3 cut(s)	179, 319, 339
AciI	CCGC	6 cut(s)	186, 222, 322, 337, 343, 496
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	4 cut(s)	450, 473, 535, 572
AfiI	CCNNNNNNNGG	5 cut(s)	283, 328, 365, 463, 530
AgsI	TTSAA	3 cut(s)	22, 295, 578
AjnI	CCWGG	4 cut(s)	236, 282, 372, 523
AluBI	AGCT	2 cut(s)	244, 463
AluI	AGCT	2 cut(s)	244, 463
Alw21I	GWGCWC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	489
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	5 cut(s)	48, 253, 297, 306, 413
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	3 cut(s)	49, 254, 376
AsuC2I	CCSGG	3 cut(s)	252, 365, 366
AsuHPI	GGTGA	3 cut(s)	412, 446, 518
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	376
BanI	GGYRCC	2 cut(s)	197, 369
BanII	GRGCYC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	4 cut(s)	185, 209, 248, 321
BciT130I	CCWGG	4 cut(s)	238, 284, 374, 525
BcnI	CCSGG	3 cut(s)	252, 365, 366
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	3 cut(s)	222, 322, 344
BlsI	GCNGC	3 cut(s)	223, 323, 345
Bme1390I	CCNGG	7 cut(s)	238, 252, 284, 365, 366, 374, 525
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	3 cut(s)	49, 254, 376
BmiI	GGNNCC	5 cut(s)	199, 256, 371, 378, 408
BmrFI	CCNGG	7 cut(s)	238, 252, 284, 365, 366, 374, 525
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	1 cut(s)	15
BmuI	ACTGGG	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	3 cut(s)	252, 365, 366
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	6 cut(s)	237, 250, 364, 365, 410, 524
BsaWI	WCCGGW	2 cut(s)	206, 503
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 328, 365, 463, 530
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	4 cut(s)	238, 284, 374, 525
BseDI	CCNNGG	6 cut(s)	237, 250, 364, 365, 410, 524
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	5 cut(s)	283, 328, 365, 463, 530
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	4 cut(s)	24, 69, 173, 551
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	6 cut(s)	71, 74, 112, 115, 133, 136
Bsh1236I	CGCG	3 cut(s)	179, 319, 339
BshFI	GGCC	5 cut(s)	50, 255, 299, 308, 415
BshNI	GGYRCC	2 cut(s)	197, 369
BsiHKAI	GWGCWC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	4 cut(s)	207, 252, 365, 504
BslFI	GGGAC	2 cut(s)	362, 440
BslI	CCNNNNNNNGG	5 cut(s)	283, 328, 365, 463, 530
BsmFI	GGGAC	2 cut(s)	362, 440
BsnI	GGCC	5 cut(s)	50, 255, 299, 308, 415
BsoBI	CYCGRG	1 cut(s)	364
Bsp1286I	GDGCHC	2 cut(s)	336, 365
Bsp143I	GATC	2 cut(s)	130, 481
BspACI	CCGC	6 cut(s)	186, 222, 322, 337, 343, 496
BspANI	GGCC	5 cut(s)	50, 255, 299, 308, 415
BspCNI	CTCAG	4 cut(s)	23, 68, 172, 550
BspFNI	CGCG	3 cut(s)	179, 319, 339
BspLI	GGNNCC	5 cut(s)	199, 256, 371, 378, 408
BspPI	GGATC	1 cut(s)	489
BspQI	GCTCTTC	1 cut(s)	413
BspT107I	GGYRCC	2 cut(s)	197, 369
BsrBI	CCGCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	6 cut(s)	237, 250, 364, 365, 410, 524
BssMI	GATC	2 cut(s)	130, 481
BssNI	GRCGYC	1 cut(s)	356
Bst2UI	CCWGG	4 cut(s)	238, 284, 374, 525
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	4 cut(s)	68, 119, 154, 413
BstACI	GRCGYC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	4 cut(s)	10, 55, 159, 537
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	3 cut(s)	179, 319, 339
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	2 cut(s)	133, 484
BstMBI	GATC	2 cut(s)	130, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 305, 340, 369
BstNI	CCWGG	4 cut(s)	238, 284, 374, 525
BstSCI	CCNGG	7 cut(s)	236, 250, 282, 363, 364, 372, 523
BstUI	CGCG	3 cut(s)	179, 319, 339
BsuRI	GGCC	5 cut(s)	50, 255, 299, 308, 415
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	3 cut(s)	49, 254, 376
Cfr9I	CCCGGG	1 cut(s)	364
CseI	GACGC	3 cut(s)	61, 168, 364
Csp6I	GTAC	4 cut(s)	449, 472, 534, 571
CviAII	CATG	2 cut(s)	328, 430
CviQI	GTAC	4 cut(s)	449, 472, 534, 571
DdeI	CTNAG	4 cut(s)	10, 55, 159, 537
DpnI	GATC	2 cut(s)	132, 483
DpnII	GATC	2 cut(s)	130, 481
EaeI	YGGCCR	1 cut(s)	413
Eam1104I	CTCTTC	4 cut(s)	68, 119, 154, 413
EarI	CTCTTC	4 cut(s)	68, 119, 154, 413
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	364
EcoRII	CCWGG	4 cut(s)	236, 282, 372, 523
EcoT38I	GRGCYC	1 cut(s)	365
FaeI	CATG	2 cut(s)	331, 433
FaiI	YATR	8 cut(s)	233, 329, 396, 431, 436, 441, 601, 614
FaqI	GGGAC	2 cut(s)	362, 440
FatI	CATG	2 cut(s)	327, 429
Fnu4HI	GCNGC	3 cut(s)	222, 322, 344
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	222, 322, 344
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	3 cut(s)	222, 322, 344
HaeIII	GGCC	5 cut(s)	50, 255, 299, 308, 415
HapII	CCGG	4 cut(s)	207, 252, 365, 504
HgaI	GACGC	3 cut(s)	61, 168, 364
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	331, 433
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	1 cut(s)	583
HpaII	CCGG	4 cut(s)	207, 252, 365, 504
HphI	GGTGA	3 cut(s)	412, 446, 518
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	2 cut(s)	269, 358
HpyAV	CCTTC	3 cut(s)	174, 397, 472
HpyCH4III	ACNGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 305, 340, 369
HpyF3I	CTNAG	4 cut(s)	10, 55, 159, 537
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	2 cut(s)	331, 433
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	130, 481
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	241, 331
LweI	GCATC	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	73, 553
MalI	GATC	2 cut(s)	132, 483
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	2 cut(s)	130, 481
MboII	GAAGA	5 cut(s)	55, 106, 141, 430, 619
MhlI	GDGCHC	2 cut(s)	336, 365
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	192
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	4 cut(s)	207, 252, 365, 504
MspR9I	CCNGG	7 cut(s)	238, 252, 284, 365, 366, 374, 525
MvaI	CCWGG	4 cut(s)	238, 284, 374, 525
MvnI	CGCG	3 cut(s)	179, 319, 339
MwoI	GCNNNNNNNGC	4 cut(s)	185, 305, 340, 369
NciI	CCSGG	3 cut(s)	252, 365, 366
NdeII	GATC	2 cut(s)	130, 481
NlaIII	CATG	2 cut(s)	331, 433
NlaIV	GGNNCC	5 cut(s)	199, 256, 371, 378, 408
NmeAIII	GCCGAG	2 cut(s)	384, 411
NmuCI	GTSAC	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	223, 323, 345
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp6I	CCWGG	4 cut(s)	236, 282, 372, 523
PspGI	CCWGG	4 cut(s)	236, 282, 372, 523
PspN4I	GGNNCC	5 cut(s)	199, 256, 371, 378, 408
PspPI	GGNCC	3 cut(s)	49, 254, 376
RsaI	GTAC	4 cut(s)	450, 473, 535, 572
RsaNI	GTAC	4 cut(s)	449, 472, 534, 571
RseI	CAYNNNNRTG	1 cut(s)	11
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	3 cut(s)	222, 322, 344
Sau3AI	GATC	2 cut(s)	130, 481
Sau96I	GGNCC	3 cut(s)	49, 254, 376
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	7 cut(s)	238, 252, 284, 365, 366, 374, 525
SduI	GDGCHC	2 cut(s)	336, 365
SetI	ASST	6 cut(s)	160, 246, 402, 408, 454, 465
SfaNI	GCATC	1 cut(s)	15
SfiI	GGCCNNNNNGGCC	1 cut(s)	305
SinI	GGWCC	1 cut(s)	376
SmaI	CCCGGG	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	11
SsiI	CCGC	6 cut(s)	186, 222, 322, 337, 343, 496
StyD4I	CCNGG	7 cut(s)	236, 250, 282, 363, 364, 372, 523
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	213, 267
TatI	WGTACW	2 cut(s)	471, 570
TauI	GCSGC	3 cut(s)	224, 324, 346
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	399
TspMI	CCCGGG	1 cut(s)	364
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	376
XmaI	CCCGGG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.