pycom03g17400

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0014694
Physical Location & Seq
Forward (+)
18571072 .. 18571772
701 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGGAAAAAGCTCTGAAACTCAAAGAGAAGCAACACCAGGGCCAAGCCATGCAAATATCGAAGCAACAACGACGAGAACCACAAGACCAGATCAAGCTTGCTGTCACTGCCATCACCCTCAATGCACGGTTGAGATCATCCGACATGCCTGCCCACATGCAAAACCACGCTCTCCGCCACACCCGATCACTCCTCGACTCACCACCAAACCCCAAAACTCGTCTCAACCCAACACACCTCGCTCGAGCTCTCAAAAAGGAGTTTGACTCGGTGTATGGACCGGCGTGGCACTGCGTGGTGGGGACGAGTTTTGGATCGTTCGTGACTCACTCAGCCGGCGGGTTCGTGTATTTCTCTGTCGACGAATCGCTGTCGGTGCTTCTCTTCAAAACGGAGGTCCAGTTGGTGACGGAACCACGACCACCACAACCATCTAAGCCTTCAACTTTGAGTCCTTGTTGA

Protein Analysis

154

Amino Acids

17.11

Weight (kDa)

9.82

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 42 - 131 4.1e-27 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014694)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20170
malus_domestica MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica Prupe.4G183100_v2.0.a1
pyrus_communis pycom03g17400
rosa_chinensis RchiOBHm_Chr5g0033981
rosa_laevigata RLG00000033516
rosa_multiflora Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii Rroxscaffold_1G00046250
rosa_rugosa Rorug05G0143900
rosa_samantha Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana Rw5G021480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AciI CCGC 2 cut(s) 175, 339
AclWI GGATC 1 cut(s) 322
AdeI CACNNNGTG 1 cut(s) 295
AgsI TTSAA 2 cut(s) 388, 444
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 3 cut(s) 11, 97, 248
AluI AGCT 3 cut(s) 11, 97, 248
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 322
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 1 cut(s) 40
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspS9I GGNCC 3 cut(s) 40, 278, 397
AsuHPI GGTGA 3 cut(s) 106, 192, 418
AvaI CYCGRG 1 cut(s) 243
AvaII GGWCC 2 cut(s) 278, 397
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 250
BccI CCATC 2 cut(s) 119, 439
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 2 cut(s) 278, 397
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 3 cut(s) 40, 278, 397
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BsaJI CCNNGG 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bse118I RCCGGY 2 cut(s) 280, 335
Bse1I ACTGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 281, 336
BslFI GGGAC 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 90, 134, 185, 314
BspACI CCGC 2 cut(s) 175, 339
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 1 cut(s) 322
BsrFI RCCGGY 2 cut(s) 280, 335
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 2 cut(s) 280, 335
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 4 cut(s) 90, 134, 185, 314
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 99, 150, 337
BstDEI CTNAG 2 cut(s) 331, 435
BstF5I GGATG 1 cut(s) 137
BstKTI GATC 4 cut(s) 93, 137, 188, 317
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 4 cut(s) 90, 134, 185, 314
BstMWI GCNNNNNNNGC 2 cut(s) 107, 376
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 2 cut(s) 148, 160
BstSCI CCNGG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 137
BtsI GCAGTG 2 cut(s) 105, 289
BtsIMutI CAGTG 2 cut(s) 105, 289
Cac8I GCNNGC 3 cut(s) 99, 150, 337
Cfr10I RCCGGY 2 cut(s) 280, 335
Cfr13I GGNCC 3 cut(s) 40, 278, 397
CviAII CATG 3 cut(s) 49, 145, 157
CviJI RGCY 7 cut(s) 11, 42, 47, 97, 248, 335, 439
CviKI_1 RGCY 7 cut(s) 11, 42, 47, 97, 248, 335, 439
DdeI CTNAG 2 cut(s) 331, 435
DpnI GATC 4 cut(s) 92, 136, 187, 316
DpnII GATC 4 cut(s) 90, 134, 185, 314
DraIII CACNNNGTG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
EciI GGCGGA 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 278, 397
Eco53kI GAGCTC 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 3 cut(s) 52, 148, 160
FaiI YATR 4 cut(s) 50, 146, 158, 276
FaqI GGGAC 1 cut(s) 316
FatI CATG 3 cut(s) 48, 144, 156
FauI CCCGC 1 cut(s) 332
FblI GTMKAC 1 cut(s) 360
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 250
HaeIII GGCC 1 cut(s) 42
HapII CCGG 2 cut(s) 281, 336
Hin1II CATG 3 cut(s) 52, 148, 160
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 5 cut(s) 197, 266, 325, 365, 451
HpaII CCGG 2 cut(s) 281, 336
HphI GGTGA 3 cut(s) 106, 192, 418
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 15, 142
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 2 cut(s) 75, 365
HpyAV CCTTC 1 cut(s) 450
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 52, 125, 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 376
HpyF3I CTNAG 2 cut(s) 331, 435
Hsp92II CATG 3 cut(s) 52, 148, 160
KroI GCCGGC 1 cut(s) 335
KroNI GCCGGC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 90, 134, 185, 314
LpnPI CCDG 7 cut(s) 23, 50, 101, 162, 294, 349, 413
MaeIII GTNAC 3 cut(s) 103, 322, 406
MalI GATC 4 cut(s) 92, 136, 187, 316
MboI GATC 4 cut(s) 90, 134, 185, 314
MboII GAAGA 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 250
MlyI GAGTC 4 cut(s) 191, 260, 319, 460
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 128, 203, 248, 388
MroNI GCCGGC 1 cut(s) 335
MspI CCGG 2 cut(s) 281, 336
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 107, 376
NaeI GCCGGC 1 cut(s) 337
NdeII GATC 4 cut(s) 90, 134, 185, 314
NgoMIV GCCGGC 1 cut(s) 335
NlaIII CATG 3 cut(s) 52, 148, 160
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 3 cut(s) 103, 322, 406
NspI RCATGY 2 cut(s) 148, 160
PaeR7I CTCGAG 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 365
PleI GAGTC 4 cut(s) 191, 260, 319, 459
PpsI GAGTC 4 cut(s) 191, 260, 319, 459
Psp124BI GAGCTC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 3 cut(s) 40, 278, 397
PspXI VCTCGAGB 1 cut(s) 243
SacI GAGCTC 1 cut(s) 250
SalI GTCGAC 1 cut(s) 359
Sau3AI GATC 4 cut(s) 90, 134, 185, 314
Sau96I GGNCC 3 cut(s) 40, 278, 397
SchI GAGTC 4 cut(s) 191, 260, 319, 460
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 250
SetI ASST 5 cut(s) 13, 99, 240, 250, 399
Sfr274I CTCGAG 1 cut(s) 243
SinI GGWCC 2 cut(s) 278, 397
SlaI CTCGAG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
SsiI CCGC 2 cut(s) 175, 339
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 4 cut(s) 59, 195, 244, 360
TfiI GAWTC 1 cut(s) 365
TscAI CASTG 2 cut(s) 112, 296
TseFI GTSAC 3 cut(s) 103, 322, 406
Tsp45I GTSAC 3 cut(s) 103, 322, 406
TspGWI ACGGA 2 cut(s) 407, 425
TspRI CASTG 2 cut(s) 112, 296
VpaK11BI GGWCC 2 cut(s) 278, 397
XceI RCATGY 2 cut(s) 148, 160
XhoI CTCGAG 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.