pycom03g18250

Protein SAWADEE HOMEODOMAIN HOMOLOG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012161
Physical Location & Seq
Reverse (-)
19254089 .. 19260241
6153 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
ATGGGTAGGCCTCCGAGCAACGGAGGCCCTGCCTTCCGCTTCGTCCAGTCTGAGGTTACGGAGATGGAAGCTATTCTGCAACAATACAATAATACAATGCCATCACGTGAAGTGCTTATGGCCCTTGCAGATAAGTTCAGTGAATCACCGGAGCGAAAGGGCAAGATTACAGTACAAATGAAGCAAGTTTGGAATTGGTTCCAAAATAGGCGATATGCTATTAGGGCAAAATCAAGCAAGGTTCTTGGTAAGTTAGACGTGTCACCTATGTCTCGCGATGATTTGGCTGCAGCGAGAAATGTTCCTCAAGGCCCTCAGCAGATTGCTGCTCCTGTACATGTTCCTTCTGTTCCAGGCTCAGGAAAGGGTGCTCCTGAAAATGCTATCTTTGAGTTTGAAGCTAAATCTGGGAGGGATGGTGCATGGTATGATGTTGCAAACTTTTTATCTCATAAAAATTTGGAGACTGGTAATCCGGAAGTTCTGGTTCGGTTTGCTGGATTTGGACCAGAGGAGGATGAGTGGGTTACTGTACGAAAGCATGTCAGGCAGCGCTCTCTCCCATGTGAATCATCCGAGTGCGTTGCAGTTCTCCCCGGAGATCTCATACTATGCTTTCAGGAAGGTAAAGAGCAGGCTTTGTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGAAGACATGATGTAAGAGGATGTCGATGTAGGTTTCTAGTGCGCTATGTTCATGATCAGTCCGAGGAAATTGTTCCACTGAGAAAGGTCTGCCGTCGGCCTGAAACAGATTACAGGTTGCAACAACTTCATGCTGTGAACGAGGCAATATCAGCGGAGCAGAAAAGTATGGAGCAATATATGGCGTCTGCTACTTCTGGCGAAATGCTGCAAAAGCAGCAGAATGCCGTGTCCCCAACTTTTCATGTTACAGCTTCTTTACCTACCCAAACTACAACTCCAGAGTTGAGAAGAGCTGAAATCAGCACCGTTGTTAGATCAGGGAATTCTAGTGCCCCTCTAAGTAGTAGTACCATAATCACAAGCGAGCTGGCTACGGTTGTCGCTCCCGGTGGCTCGGTCTCGACTGTGCCAAAGGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox SAWADEE

Protein Analysis

367

Amino Acids

40.55

Weight (kDa)

8.48

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 130 - 256 2.2e-43 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18380 AT3G18380 AT3G18380
fragaria_vesca FvH4_3g19120
malus_domestica MD03G1236400.v1.1 MD11G1257200.v1.1
prunus_persica Prupe.4G172900_v2.0.a1 Prupe.4G172900_v2.0.a1
pyrus_communis pycom03g18250 pycom11g22730
rosa_chinensis RchiOBHm_Chr5g0031921
rosa_laevigata RLG00000033358
rosa_roxburghii Rroxscaffold_1G00048340
rosa_rugosa Rorug05G0129200
rosa_samantha Rh5AG223200 Rh5BG223300 Rh5CG246500 Rh5DG228200
rosa_wichuraiana Rw5G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 2 cut(s) 37, 830
AcsI RAATTY 2 cut(s) 457, 1000
AcvI CACGTG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 860
AfaI GTAC 5 cut(s) 174, 336, 534, 644, 1027
AfeI AGCGCT 1 cut(s) 554
AfiI CCNNNNNNNGG 3 cut(s) 20, 52, 359
AflIII ACRYGT 2 cut(s) 258, 337
AgsI TTSAA 1 cut(s) 398
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 5 cut(s) 71, 401, 929, 971, 1045
AluI AGCT 5 cut(s) 71, 401, 929, 971, 1045
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 3 cut(s) 276, 458, 1081
Aor13HI TCCGGA 1 cut(s) 475
Aor51HI AGCGCT 1 cut(s) 554
AoxI GGCC 5 cut(s) 8, 25, 120, 310, 773
ApeKI GCWGC 6 cut(s) 287, 290, 326, 550, 883, 892
ApoI RAATTY 2 cut(s) 457, 1000
Asp700I GAANNNNTTC 3 cut(s) 72, 197, 747
AspLEI GCGC 2 cut(s) 555, 720
AspS9I GGNCC 4 cut(s) 26, 121, 311, 506
AsuC2I CCSGG 2 cut(s) 597, 1065
AsuHPI GGTGA 2 cut(s) 138, 255
AvaII GGWCC 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 1012
BbrPI CACGTG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 685
Bbv12I GWGCWC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 6 cut(s) 274, 302, 313, 562, 870, 904
BccI CCATC 3 cut(s) 58, 109, 410
BceAI ACGGC 2 cut(s) 753, 887
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 2 cut(s) 597, 1065
BcoDI GTCTC 3 cut(s) 276, 458, 1081
BfaI CTAG 2 cut(s) 713, 1005
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 556
BglII AGATCT 1 cut(s) 601
BisI GCNGC 6 cut(s) 288, 291, 327, 551, 884, 893
BlsI GCNGC 6 cut(s) 289, 292, 328, 552, 885, 894
Bme1390I CCNGG 3 cut(s) 354, 597, 1065
Bme18I GGWCC 1 cut(s) 506
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 4 cut(s) 26, 121, 311, 506
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 3 cut(s) 354, 597, 1065
BmsI GCATC 2 cut(s) 640, 655
BpiI GAAGAC 1 cut(s) 685
BpmI CTGGAG 1 cut(s) 939
Bpu10I CCTNAGC 2 cut(s) 315, 358
BpuEI CTTGAG 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 597, 1065
BsaAI YACGTR 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 860
BsaI GGTCTC 1 cut(s) 1081
BsaJI CCNNGG 2 cut(s) 595, 738
BsaWI WCCGGW 2 cut(s) 148, 475
BsaXI ACNNNNNCTCC 6 cut(s) 403, 433, 506, 536, 937, 967
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 52, 359
Bse1I ACTGG 2 cut(s) 46, 472
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 595, 738
BseGI GGATG 4 cut(s) 421, 523, 572, 701
BseLI CCNNNNNNNGG 3 cut(s) 20, 52, 359
BseMII CTCAG 4 cut(s) 42, 329, 372, 746
BseNI ACTGG 2 cut(s) 46, 472
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 1012
BseXI GCAGC 6 cut(s) 274, 302, 313, 562, 870, 904
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 5 cut(s) 10, 27, 122, 312, 775
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 4 cut(s) 149, 476, 597, 1065
BslFI GGGAC 1 cut(s) 892
BslI CCNNNNNNNGG 3 cut(s) 20, 52, 359
BsmAI GTCTC 3 cut(s) 276, 458, 1081
BsmFI GGGAC 1 cut(s) 892
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 5 cut(s) 10, 27, 122, 312, 775
Bso31I GGTCTC 1 cut(s) 1081
Bsp1286I GDGCHC 2 cut(s) 373, 1012
Bsp13I TCCGGA 1 cut(s) 475
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 3 cut(s) 601, 730, 992
Bsp68I TCGCGA 1 cut(s) 276
BspACI CCGC 2 cut(s) 37, 830
BspANI GGCC 5 cut(s) 10, 27, 122, 312, 775
BspCNI CTCAG 4 cut(s) 43, 328, 371, 747
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 1 cut(s) 276
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 961
BspTNI GGTCTC 1 cut(s) 1081
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 2 cut(s) 46, 472
BssECI CCNNGG 2 cut(s) 595, 738
BssMI GATC 3 cut(s) 601, 730, 992
BssNI GRCGYC 1 cut(s) 860
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 5 cut(s) 172, 532, 985, 1054, 1084
Bst6I CTCTTC 1 cut(s) 961
BstACI GRCGYC 1 cut(s) 860
BstAUI TGTACA 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 636, 1043, 1047
BstDEI CTNAG 5 cut(s) 51, 315, 358, 755, 1016
BstF5I GGATG 4 cut(s) 421, 523, 572, 701
BstFNI CGCG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 2 cut(s) 555, 720
BstKTI GATC 3 cut(s) 604, 733, 995
BstMAI GTCTC 3 cut(s) 276, 458, 1081
BstMBI GATC 3 cut(s) 601, 730, 992
BstMWI GCNNNNNNNGC 6 cut(s) 24, 224, 547, 827, 889, 892
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 2 cut(s) 341, 545
BstSCI CCNGG 3 cut(s) 352, 595, 1063
BstSFI CTRYAG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 1012
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 6 cut(s) 274, 302, 313, 562, 870, 904
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 5 cut(s) 10, 27, 122, 312, 775
BtgZI GCGATG 1 cut(s) 291
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 4 cut(s) 421, 523, 572, 701
BtsIMutI CAGTG 2 cut(s) 145, 752
BtuMI TCGCGA 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 636, 1043, 1047
CciI TCATGA 1 cut(s) 727
CfoI GCGC 2 cut(s) 555, 720
Cfr13I GGNCC 4 cut(s) 26, 121, 311, 506
CseI GACGC 1 cut(s) 849
Csp6I GTAC 5 cut(s) 173, 335, 533, 643, 1026
CviAII CATG 9 cut(s) 338, 423, 542, 564, 656, 683, 728, 806, 920
CviQI GTAC 5 cut(s) 173, 335, 533, 643, 1026
DdeI CTNAG 5 cut(s) 51, 315, 358, 755, 1016
DpnI GATC 3 cut(s) 603, 732, 994
DpnII GATC 3 cut(s) 601, 730, 992
Eam1104I CTCTTC 1 cut(s) 961
EarI CTCTTC 1 cut(s) 961
Eco147I AGGCCT 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 1081
Eco47I GGWCC 1 cut(s) 506
Eco47III AGCGCT 1 cut(s) 554
Eco72I CACGTG 1 cut(s) 107
EcoO109I RGGNCCY 2 cut(s) 26, 311
EcoRI GAATTC 1 cut(s) 1000
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 9 cut(s) 341, 426, 545, 567, 659, 686, 731, 809, 923
FaqI GGGAC 1 cut(s) 892
FatI CATG 9 cut(s) 337, 422, 541, 563, 655, 682, 727, 805, 919
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 6 cut(s) 288, 291, 327, 551, 884, 893
FokI GGATG 4 cut(s) 428, 530, 559, 708
Fsp4HI GCNGC 6 cut(s) 288, 291, 327, 551, 884, 893
FspBI CTAG 2 cut(s) 713, 1005
GlaI GCGC 2 cut(s) 554, 719
GluI GCNGC 6 cut(s) 288, 291, 327, 551, 884, 893
GsuI CTGGAG 1 cut(s) 939
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 5 cut(s) 10, 27, 122, 312, 775
HapII CCGG 4 cut(s) 149, 476, 597, 1065
HgaI GACGC 1 cut(s) 849
HhaI GCGC 2 cut(s) 555, 720
Hin1I GRCGYC 1 cut(s) 860
Hin1II CATG 9 cut(s) 341, 426, 545, 567, 659, 686, 731, 809, 923
Hin6I GCGC 2 cut(s) 553, 718
HinP1I GCGC 2 cut(s) 553, 718
HinfI GANTC 2 cut(s) 143, 569
HpaII CCGG 4 cut(s) 149, 476, 597, 1065
HphI GGTGA 2 cut(s) 138, 255
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 4 cut(s) 15, 52, 577, 739
Hpy188III TCNNGA 8 cut(s) 275, 360, 374, 476, 620, 728, 956, 1078
Hpy8I GTNNAC 1 cut(s) 814
Hpy99I CGWCG 1 cut(s) 774
HpyAV CCTTC 3 cut(s) 43, 354, 617
HpyCH4III ACNGT 5 cut(s) 172, 532, 985, 1054, 1084
HpyCH4IV ACGT 2 cut(s) 106, 258
HpyCH4V TGCA 8 cut(s) 79, 128, 290, 422, 437, 587, 796, 886
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 224, 547, 827, 889, 892
HpyF3I CTNAG 5 cut(s) 51, 315, 358, 755, 1016
HpySE526I ACGT 2 cut(s) 106, 258
Hsp92I GRCGYC 1 cut(s) 860
Hsp92II CATG 9 cut(s) 341, 426, 545, 567, 659, 686, 731, 809, 923
HspAI GCGC 2 cut(s) 553, 718
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 3 cut(s) 601, 730, 992
LguI GCTCTTC 1 cut(s) 961
LmnI GCTCC 6 cut(s) 151, 334, 376, 832, 847, 1066
Lsp1109I GCAGC 6 cut(s) 274, 302, 313, 562, 870, 904
LweI GCATC 2 cut(s) 640, 655
MaeI CTAG 2 cut(s) 713, 1005
MaeII ACGT 2 cut(s) 106, 258
MaeIII GTNAC 4 cut(s) 55, 261, 526, 922
MalI GATC 3 cut(s) 603, 732, 994
MboI GATC 3 cut(s) 601, 730, 992
MboII GAAGA 2 cut(s) 690, 978
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 2 cut(s) 373, 1012
MluCI AATT 5 cut(s) 193, 457, 744, 1000, 1096
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 3 cut(s) 72, 197, 747
MslI CAYNNNNRTG 1 cut(s) 577
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 4 cut(s) 149, 476, 597, 1065
MspR9I CCNGG 3 cut(s) 354, 597, 1065
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 6 cut(s) 24, 224, 547, 827, 889, 892
NciI CCSGG 2 cut(s) 597, 1065
NdeII GATC 3 cut(s) 601, 730, 992
NlaIII CATG 9 cut(s) 341, 426, 545, 567, 659, 686, 731, 809, 923
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 261
NruI TCGCGA 1 cut(s) 276
NspI RCATGY 2 cut(s) 341, 545
PagI TCATGA 1 cut(s) 727
PceI AGGCCT 1 cut(s) 10
PciI ACATGT 1 cut(s) 337
PciSI GCTCTTC 1 cut(s) 961
PctI GAATGC 1 cut(s) 904
PdmI GAANNNNTTC 3 cut(s) 72, 197, 747
PfeI GAWTC 2 cut(s) 143, 569
PkrI GCNGC 6 cut(s) 289, 292, 328, 552, 885, 894
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 107
PscI ACATGT 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 352
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 4 cut(s) 26, 121, 311, 506
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 601
RruI TCGCGA 1 cut(s) 276
RsaI GTAC 5 cut(s) 174, 336, 534, 644, 1027
RsaNI GTAC 5 cut(s) 173, 335, 533, 643, 1026
RseI CAYNNNNRTG 1 cut(s) 577
SapI GCTCTTC 1 cut(s) 961
SatI GCNGC 6 cut(s) 288, 291, 327, 551, 884, 893
Sau3AI GATC 3 cut(s) 601, 730, 992
Sau96I GGNCC 4 cut(s) 26, 121, 311, 506
ScrFI CCNGG 3 cut(s) 354, 597, 1065
SduI GDGCHC 2 cut(s) 373, 1012
SfaNI GCATC 2 cut(s) 640, 655
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 5 cut(s) 193, 457, 744, 1000, 1096
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 2 cut(s) 37, 830
SspMI CTAG 2 cut(s) 713, 1005
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 352, 595, 1063
TaaI ACNGT 5 cut(s) 172, 532, 985, 1054, 1084
TaiI ACGT 2 cut(s) 109, 261
TaqI TCGA 2 cut(s) 700, 1079
TaqII GACCGA 1 cut(s) 1063
TasI AATT 5 cut(s) 193, 457, 744, 1000, 1096
TatI WGTACW 3 cut(s) 172, 334, 642
TfiI GAWTC 2 cut(s) 143, 569
TscAI CASTG 2 cut(s) 145, 759
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 6 cut(s) 287, 290, 326, 550, 883, 892
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 4 cut(s) 194, 716, 794, 908
TspGWI ACGGA 2 cut(s) 36, 74
TspRI CASTG 2 cut(s) 145, 759
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 2 cut(s) 457, 1000
XceI RCATGY 2 cut(s) 341, 545
XmnI GAANNNNTTC 3 cut(s) 72, 197, 747
XspI CTAG 2 cut(s) 713, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.