Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004914

Physical Location & Seq

Genomic Coordinates Reverse (-)

19727998 .. 19732815

Gene Structure 4818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGGCTAACAGGAATCTGGAGAAGTTGGCGTCCATCGACGCGCAGCTTCGGCTTCTGGTTCCGGCCAAAGTGAGCGAGGACGACAAGCTGGTGGAATACGATGCTCTGCTTTTGGATCGGTTTCTGGATATTCTCCAAGATTTACATGGAGAGGATCTCAGGGAAACGGTTCAAGCATGTTATGAGCTTTCTGCTGAGTATGAAGGAAAGCATGACCCGAAAAAGCTGTCAGAGCTTGGAAATGTATTGACAAGTTTGGACCCAGGGGATTCTATTGTTGTTGCAAAATCCTTCGCCCACATGCTTAGCTTGGCCAACTTGGCTGAGGAGGTCCAGATTGCTTACCGCAGACGAAACAAGCTGAAAAAGGGTGACTTTGCAGATGAAAATTCTGCAACGACTGAATCAGACATTGAAGAAACTCTCAAGAGGCTTGTAGGGGATCTAAAAAAGTCCCCTCAAGAGGTTTTCGATGCTCTCAAGAATCAGACTGTAGATCTGGTCCTCACTGCTCATCCTACACAATCAATTCGTAGATCCTTACTTCAGAAGCACGGAAGGATTCGGAATTGTTTAACCCAGTTGTACGCGAAAGACATTACTCCTGATGATAAGCAGGAGATTGATGAGGCACTTCAGAGAGAGATCCAAGCTGCATTTCGTACAGATGAGATCCGAAGAACAGCTCCCACTCCACAAGATGAGATGAGAGCGGGGATGAGCTATTTCCATGAAACAATTTGGAAGGGTGTCCCAAAATTTCTCCGTCGTGTGGATACAGCTTTAAAGAATATTGGGATTAATGAGCGTGTTCCCCATAACGCCCCACTTATTCAGTTTTCTTCCTGGATGGGTGGTGATCGTGATGGTAATCCAAGAGTAACTCCCGAGGTCACAAGGGACGTTTGCCTACTGGCTAGAATGATGGCTGCAAACTTGTACTATTCTCAGATAGACGATCTTATGTTTGAGTTGTCTATGTGGCGCTGCAATGATGAACTCCGTGTTTGTGCAGATGTACTTCACAGGTCCACGAGGAGAGATGCAAAGCACTACATAGAATTTTGGAAGCAAGTTCCTCCAAATGAACCCTACCGTGTGATTCTCGGTGATGTAAGGGATAAGCTTTATCATACACGTGAACGTTCTCGTCAGTTGTTAGCCAGTGGGCACTCTGACATTCCGGAGGAGGCAACACTGATCAGTGTTGAGCAGTTCTTGGAACCTCTCGAACTCTGTTACAGATCACTCTGCTCTTGTGGTGACCGGGCAATTGCTGATGGATCACTTCTTGATTTCTTAAGGCAAGTGTCCACCTTTGGACTTTCACTTGTGAAGCTCGATATTAGGCAAGAATCTGACAGGCATACTGATGTGATTGACGCCATCACCAAGCATCTGGAAATTGGTTCCTATCGTGAGTGGTCTGAAGAACGCCGTCAGGAGTGGCTCTTATCTGAACTATGTGGCAAGCGCCCACTGTTTGGCCCTGATCTTCCAAAAACGGAAGAAATTTCTGATGTTTTGGACACATTACATGTGATTTCAGAACTTCCATCTGATAATTTTGGAGCATACATCATCTCCATGGCTACTGCTCCATCTGATGTGCTTGCAGTTGAGCTCCTGCAACGCGAATGCCATGTGAAGAAACCACTAAGAGTCGTTCCACTGTTTGAGAAGCTTGCAGATCTGGAGGCTGCTCCTGCTGCTTTGGCACGGCTTTTCTCAATTGATTGGTATAGAGAACGGATCAATGGAAAGCAAGAAGTCATGATTGGGTACTCAGATTCTGGTAAAGATGCTGGGCGTTTCTCTGCAGCCTGGCAGTTATACAAGGCACAGGAGGAGCTTATAAACGTGGCTAAGAAATTTGGTGTGAAGCTAACCATGTTCCACGGTCGTGGTGGCACTGTAGGAAGGGGAGGTGGGCCCACCCATCTTGCTATATTGTCTCAACCGCCAGATACAATTCATGGTTCACTCCGTGTCACTGTCCAAGGTGAAGTTATTGAGCAGTCGTTTGGAGAGGAGCTCTTGTGTTTTAGAACATTGCAGCGTTTCACAGCTGCTACACTAGAGCATGGAATGCATACGCCAGTTTCACCAAAACCAGAATGGCGTGCACTGATGGACGAAATGGCAGTTGTAGCTACAGAGGACTACCGCTCCATTGTTTTCCAAGAGCCCCGATTTGTCGAGTACTTCCGTCTTCCTACACCAGAGCTGGAGTATGGTCGGATGAACATTGGCAGTCGCCCCTCAAAGCGAAAACCTAGTGGTGGTATTGAATCACTTCGTGCAATCCCATGGATTTTCGCCTGGACACAAACAAGGTTCCATCTTCCTGTGTGGTTAGGCTTTGGAGCAGCCTTCAGGCATGTCATTAAGAAGGACATTAAGAATCTTCACATGCTGCAAGAGATGTACAACCAATGGCCTTTCTTCAGGGTCACCATTGATTTGGTTGAAATGGTGTTTGCCAAGGGAAACCCCGGAATAGCTGCGTTATATGATAAACTCCTTGTTTCTGAAGACCTATGGTCATTTGGAGAGCGATTAAGGTCCAATTATGAAGAAACCAAGAACTTTCTCTTGCAGATTGCTGGACACAAGGATCTTCTTGAAGGGGACCTGCACCTGAAGCAAAGACTCCGCCTGCGTGATTCATACATCACAACCCTCAACGTCTGCCAAGCATATACACTGAAAAGGATCCGTGACCCAAACTTCCACGTCACACTACGGCCACACATCTCAAAGGAAATCAGTGAATCAAACAAACCGGCTAATGAACTTGTGAAGCTGAACCCGACAAGTGAGTACGCGCCTGGTCTGGAGGACACCCTCATCTTGACAATGAAGGGTATTGCTGCCGGCTTACAAAACACCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008964 GO:0009267 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0065003 GO:0071496 GO:0071840 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

966

Amino Acids

110.06

Weight (kDa)

6.04

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	34 - 965	0.0	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53310 AT1G53310 AT1G53310 AT3G14940 AT3G14940
fragaria_vesca	FvH4_3g18430 FvH4_3g18430 FvH4_3g18430 FvH4_3g18430 FvH4_3g18430
malus_domestica	MD03G1242000.v1.1 MD11G1261900.v1.1
prunus_persica	Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1
pyrus_communis	pycom03g18910 pycom11g23090
rosa_chinensis	RchiOBHm_Chr5g0031161
rosa_laevigata	RLG00000033287
rosa_multiflora	Rmu_sc0011257.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049100
rosa_rugosa	Rorug05G0122600 Rorug05G0122700
rosa_samantha	Rh5AG216300 Rh5BG215600 Rh5CG239100 Rh5DG220500
rosa_wichuraiana	Rw5G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1856
Acc36I	ACCTGC	1 cut(s)	2643
AccB7I	CCANNNNNTGG	1 cut(s)	1484
AccBSI	CCGCTC	2 cut(s)	713, 2169
AccII	CGCG	4 cut(s)	41, 590, 1635, 2828
AccIII	TCCGGA	1 cut(s)	1183
AciI	CCGC	5 cut(s)	346, 713, 1961, 2167, 2656
AclI	AACGTT	1 cut(s)	1144
AcoI	YGGCCR	3 cut(s)	63, 312, 2747
AcsI	RAATTY	5 cut(s)	388, 758, 1061, 1512, 1871
AcuI	CTGAAG	7 cut(s)	530, 620, 1449, 2359, 2431, 2553, 2663
AcvI	CACGTG	1 cut(s)	1139
AcyI	GRCGYC	2 cut(s)	29, 1383
AdeI	CACNNNGTG	2 cut(s)	1988, 2300
AfaI	GTAC	8 cut(s)	587, 664, 941, 1020, 1784, 2204, 2429, 2825
AfiI	CCNNNNNNNGG	4 cut(s)	463, 772, 1484, 2282
AflII	CTTAAG	1 cut(s)	1300
AflIII	ACRYGT	2 cut(s)	1136, 1537
AgeI	ACCGGT	1 cut(s)	2891
AgsI	TTSAA	5 cut(s)	173, 416, 2291, 2471, 2627
AhdI	GACNNNNNGTC	1 cut(s)	2542
AjiI	CACGTC	1 cut(s)	2737
AjnI	CCWGG	5 cut(s)	262, 845, 1823, 2321, 2830
AjuI	GAANNNNNNNTTGG	4 cut(s)	642, 674, 1761, 1793
AleI	CACNNNNGTG	1 cut(s)	1902
Alw21I	GWGCWC	3 cut(s)	1626, 2037, 2128
Alw26I	GTCTC	1 cut(s)	1959
Alw44I	GTGCAC	1 cut(s)	2124
AlwNI	CAGNNNCTG	1 cut(s)	1793
Ama87I	CYCGRG	1 cut(s)	887
Aor13HI	TCCGGA	1 cut(s)	1183
AoxI	GGCC	6 cut(s)	63, 312, 1486, 1931, 2438, 2747
ApaI	GGGCCC	1 cut(s)	1935
ApaLI	GTGCAC	1 cut(s)	2124
ApoI	RAATTY	5 cut(s)	388, 758, 1061, 1512, 1871
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AseI	ATTAAT	1 cut(s)	801
AsiGI	ACCGGT	1 cut(s)	2891
Asp700I	GAANNNNTTC	2 cut(s)	168, 2295
AspLEI	GCGC	4 cut(s)	43, 987, 1476, 2830
AspS9I	GGNCC	9 cut(s)	259, 331, 502, 1029, 1487, 1931, 1932, 2565, 2632
AsuC2I	CCSGG	2 cut(s)	1268, 2496
AsuHPI	GGTGA	8 cut(s)	383, 869, 1121, 1274, 1381, 2015, 2097, 2446
AvaI	CYCGRG	1 cut(s)	887
AvaII	GGWCC	6 cut(s)	259, 331, 502, 1029, 2565, 2632
BaeGI	GKGCMC	3 cut(s)	1173, 1935, 2128
BalI	TGGCCA	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	2715
BanII	GRGCYC	4 cut(s)	1626, 1935, 2037, 2190
BauI	CACGAG	1 cut(s)	1033
BbrPI	CACGTG	1 cut(s)	1139
BbsI	GAAGAC	2 cut(s)	2204, 2541
Bbv12I	GWGCWC	3 cut(s)	1626, 2037, 2128
BbvCI	CCTCAGC	1 cut(s)	324
BceAI	ACGGC	3 cut(s)	1422, 1736, 2762
BciT130I	CCWGG	5 cut(s)	264, 847, 1825, 2323, 2832
BciVI	GTATCC	1 cut(s)	769
BclI	TGATCA	1 cut(s)	1200
BcnI	CCSGG	2 cut(s)	1268, 2496
BcoDI	GTCTC	1 cut(s)	1959
BfaI	CTAG	3 cut(s)	918, 2078, 2277
BfmI	CTRYAG	4 cut(s)	492, 1818, 1914, 2154
BfoI	RGCGCY	2 cut(s)	988, 1477
BfrI	CTTAAG	1 cut(s)	1300
BfuAI	ACCTGC	1 cut(s)	2643
BfuI	GTATCC	1 cut(s)	769
BglI	GCCNNNNNGGC	1 cut(s)	320
BglII	AGATCT	2 cut(s)	496, 1690
BlpI	GCTNAGC	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	2204
Bme1390I	CCNGG	7 cut(s)	264, 847, 1268, 1825, 2323, 2496, 2832
Bme18I	GGWCC	6 cut(s)	259, 331, 502, 1029, 2565, 2632
BmeRI	GACNNNNNGTC	1 cut(s)	2542
BmeT110I	CYCGRG	1 cut(s)	887
BmgBI	CACGTC	1 cut(s)	2737
BmgT120I	GGNCC	9 cut(s)	259, 331, 502, 1029, 1487, 1931, 1932, 2565, 2632
BmiI	GGNNCC	8 cut(s)	60, 261, 1224, 1411, 1933, 2339, 2633, 2717
BmrFI	CCNGG	7 cut(s)	264, 847, 1268, 1825, 2323, 2496, 2832
BmrI	ACTGGG	1 cut(s)	574
BmsI	GCATC	5 cut(s)	91, 463, 1033, 1405, 1792
BmuI	ACTGGG	1 cut(s)	574
BpiI	GAAGAC	2 cut(s)	2204, 2541
BplI	GAGNNNNNCTC	4 cut(s)	141, 173, 2019, 2051
BpmI	CTGGAG	4 cut(s)	38, 1715, 2249, 2858
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	3 cut(s)	410, 444, 464
BpuMI	CCSGG	2 cut(s)	1268, 2496
BsaAI	YACGTR	1 cut(s)	1139
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	2 cut(s)	29, 1383
BsaJI	CCNNGG	9 cut(s)	262, 263, 888, 1587, 1897, 1999, 2309, 2484, 2494
BsaWI	WCCGGW	2 cut(s)	1183, 2891
BsaXI	ACNNNNNCTCC	6 cut(s)	1568, 1598, 2024, 2054, 2153, 2183
Bsc4I	CCNNNNNNNGG	4 cut(s)	463, 772, 1484, 2282
Bse118I	RCCGGY	3 cut(s)	2785, 2876, 2891
Bse1I	ACTGG	4 cut(s)	580, 918, 1164, 2099
Bse3DI	GCAATG	2 cut(s)	997, 2051
Bse8I	GATNNNNATC	1 cut(s)	870
BseAI	TCCGGA	1 cut(s)	1183
BseBI	CCWGG	5 cut(s)	264, 847, 1825, 2323, 2832
BseDI	CCNNGG	9 cut(s)	262, 263, 888, 1587, 1897, 1999, 2309, 2484, 2494
BseGI	GGATG	4 cut(s)	514, 723, 855, 2247
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	4 cut(s)	463, 772, 1484, 2282
BseMI	GCAATG	2 cut(s)	997, 2051
BseMII	CTCAG	5 cut(s)	172, 186, 315, 962, 1800
BseNI	ACTGG	4 cut(s)	580, 918, 1164, 2099
BseRI	GAGGAG	5 cut(s)	341, 1051, 1202, 1862, 2045
BseSI	GKGCMC	3 cut(s)	1173, 1935, 2128
BseYI	CCCAGC	1 cut(s)	1805
BsgI	GTGCAG	2 cut(s)	1032, 2621
Bsh1236I	CGCG	4 cut(s)	41, 590, 1635, 2828
Bsh1285I	CGRYCG	1 cut(s)	1903
BshFI	GGCC	6 cut(s)	65, 314, 1488, 1933, 2440, 2749
BshTI	ACCGGT	1 cut(s)	2891
BsiEI	CGRYCG	1 cut(s)	1903
BsiHKAI	GWGCWC	3 cut(s)	1626, 2037, 2128
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	7 cut(s)	62, 1184, 1267, 2496, 2786, 2877, 2892
BslFI	GGGAC	4 cut(s)	439, 737, 914, 2645
BslI	CCNNNNNNNGG	4 cut(s)	463, 772, 1484, 2282
BsmAI	GTCTC	1 cut(s)	1959
BsmFI	GGGAC	4 cut(s)	439, 737, 914, 2645
BsmI	GAATGC	2 cut(s)	1643, 2094
BsnI	GGCC	6 cut(s)	65, 314, 1488, 1933, 2440, 2749
BsoBI	CYCGRG	1 cut(s)	887
Bsp120I	GGGCCC	1 cut(s)	1931
Bsp1286I	GDGCHC	6 cut(s)	1173, 1626, 1935, 2037, 2128, 2190
Bsp13I	TCCGGA	1 cut(s)	1183
Bsp1407I	TGTACA	1 cut(s)	2427
Bsp1720I	GCTNAGC	1 cut(s)	305
Bsp19I	CCATGG	2 cut(s)	1587, 2309
BspACI	CCGC	5 cut(s)	346, 713, 1961, 2167, 2656
BspANI	GGCC	6 cut(s)	65, 314, 1488, 1933, 2440, 2749
BspCNI	CTCAG	5 cut(s)	171, 187, 316, 961, 1799
BspEI	TCCGGA	1 cut(s)	1183
BspFNI	CGCG	4 cut(s)	41, 590, 1635, 2828
BspHI	TCATGA	1 cut(s)	1773
BspLI	GGNNCC	8 cut(s)	60, 261, 1224, 1411, 1933, 2339, 2633, 2717
BspMAI	CTGCAG	1 cut(s)	1822
BspMI	ACCTGC	1 cut(s)	2643
BspTI	CTTAAG	1 cut(s)	1300
BsrBI	CCGCTC	2 cut(s)	713, 2169
BsrDI	GCAATG	2 cut(s)	997, 2051
BsrFI	RCCGGY	3 cut(s)	2785, 2876, 2891
BsrGI	TGTACA	1 cut(s)	2427
BsrI	ACTGG	4 cut(s)	580, 918, 1164, 2099
BssAI	RCCGGY	3 cut(s)	2785, 2876, 2891
BssECI	CCNNGG	9 cut(s)	262, 263, 888, 1587, 1897, 1999, 2309, 2484, 2494
BssNI	GRCGYC	2 cut(s)	29, 1383
BssSI	CACGAG	1 cut(s)	1033
BssT1I	CCWWGG	4 cut(s)	1587, 1999, 2309, 2484
Bst2BI	CACGAG	1 cut(s)	1033
Bst2UI	CCWGG	5 cut(s)	264, 847, 1825, 2323, 2832
Bst4CI	ACNGT	8 cut(s)	169, 493, 1097, 1482, 1674, 1901, 1915, 1996
BstACI	GRCGYC	2 cut(s)	29, 1383
BstAFI	CTTAAG	1 cut(s)	1300
BstAPI	GCANNNNNTGC	1 cut(s)	2089
BstAUI	TGTACA	1 cut(s)	2427
BstBAI	YACGTR	1 cut(s)	1139
BstC8I	GCNNGC	6 cut(s)	1472, 1614, 1686, 2124, 2660, 2878
BstDEI	CTNAG	8 cut(s)	158, 195, 305, 324, 948, 1658, 1786, 1866
BstDSI	CCRYGG	3 cut(s)	1587, 1897, 2309
BstEII	GGTNACC	2 cut(s)	1262, 2452
BstF5I	GGATG	4 cut(s)	514, 723, 855, 2247
BstFNI	CGCG	4 cut(s)	41, 590, 1635, 2828
BstH2I	RGCGCY	2 cut(s)	988, 1477
BstHHI	GCGC	4 cut(s)	43, 987, 1476, 2830
BstMAI	GTCTC	1 cut(s)	1959
BstMCI	CGRYCG	1 cut(s)	1903
BstMWI	GCNNNNNNNGC	9 cut(s)	49, 232, 320, 1706, 1709, 1715, 2089, 2150, 2644
BstNI	CCWGG	5 cut(s)	264, 847, 1825, 2323, 2832
BstNSI	RCATGY	5 cut(s)	180, 304, 1541, 2384, 2416
BstPI	GGTNACC	2 cut(s)	1262, 2452
BstSCI	CCNGG	7 cut(s)	262, 845, 1266, 1823, 2321, 2494, 2830
BstSFI	CTRYAG	4 cut(s)	492, 1818, 1914, 2154
BstSLI	GKGCMC	3 cut(s)	1173, 1935, 2128
BstUI	CGCG	4 cut(s)	41, 590, 1635, 2828
BstV2I	GAAGAC	2 cut(s)	2204, 2541
BstX2I	RGATCY	9 cut(s)	154, 442, 496, 536, 645, 672, 1690, 2617, 2715
BstXI	CCANNNNNNTGG	3 cut(s)	1399, 1904, 2464
BstYI	RGATCY	9 cut(s)	154, 442, 496, 536, 645, 672, 1690, 2617, 2715
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	6 cut(s)	65, 314, 1488, 1933, 2440, 2749
BtgI	CCRYGG	3 cut(s)	1587, 1897, 2309
BtrI	CACGTC	1 cut(s)	2737
BtsCI	GGATG	4 cut(s)	514, 723, 855, 2247
BtsI	GCAGTG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	2643
Cac8I	GCNNGC	6 cut(s)	1472, 1614, 1686, 2124, 2660, 2878
CaiI	CAGNNNCTG	1 cut(s)	1793
CciI	TCATGA	1 cut(s)	1773
CfoI	GCGC	4 cut(s)	43, 987, 1476, 2830
Cfr10I	RCCGGY	3 cut(s)	2785, 2876, 2891
Cfr13I	GGNCC	9 cut(s)	259, 331, 502, 1029, 1487, 1931, 1932, 2565, 2632
CseI	GACGC	3 cut(s)	18, 47, 1391
Csp6I	GTAC	8 cut(s)	586, 663, 940, 1019, 1783, 2203, 2428, 2824
CspAI	ACCGGT	1 cut(s)	2891
CspCI	CAANNNNNGTGG	2 cut(s)	1924, 1959
CviQI	GTAC	8 cut(s)	586, 663, 940, 1019, 1783, 2203, 2428, 2824
DdeI	CTNAG	8 cut(s)	158, 195, 305, 324, 948, 1658, 1786, 1866
DraI	TTTAAA	1 cut(s)	786
DraIII	CACNNNGTG	2 cut(s)	1988, 2300
DriI	GACNNNNNGTC	1 cut(s)	2542
EaeI	YGGCCR	3 cut(s)	63, 312, 2747
Eam1105I	GACNNNNNGTC	1 cut(s)	2542
EciI	GGCGGA	1 cut(s)	2645
Ecl136II	GAGCTC	2 cut(s)	1624, 2035
Eco130I	CCWWGG	4 cut(s)	1587, 1999, 2309, 2484
Eco24I	GRGCYC	4 cut(s)	1626, 1935, 2037, 2190
Eco47I	GGWCC	6 cut(s)	259, 331, 502, 1029, 2565, 2632
Eco53kI	GAGCTC	2 cut(s)	1624, 2035
Eco57I	CTGAAG	7 cut(s)	530, 620, 1449, 2359, 2431, 2553, 2663
Eco72I	CACGTG	1 cut(s)	1139
Eco88I	CYCGRG	1 cut(s)	887
Eco91I	GGTNACC	2 cut(s)	1262, 2452
EcoICRI	GAGCTC	2 cut(s)	1624, 2035
EcoO109I	RGGNCCY	1 cut(s)	2632
EcoO65I	GGTNACC	2 cut(s)	1262, 2452
EcoRII	CCWGG	5 cut(s)	262, 845, 1823, 2321, 2830
EcoT14I	CCWWGG	4 cut(s)	1587, 1999, 2309, 2484
EcoT22I	ATGCAT	1 cut(s)	2094
EcoT38I	GRGCYC	4 cut(s)	1626, 1935, 2037, 2190
ErhI	CCWWGG	4 cut(s)	1587, 1999, 2309, 2484
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	4 cut(s)	439, 737, 914, 2645
FauI	CCCGC	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	1200
FokI	GGATG	4 cut(s)	501, 730, 862, 2254
FriOI	GRGCYC	4 cut(s)	1626, 1935, 2037, 2190
FspBI	CTAG	3 cut(s)	918, 2078, 2277
GlaI	GCGC	4 cut(s)	42, 986, 1475, 2829
GsaI	CCCAGC	1 cut(s)	1809
GsuI	CTGGAG	4 cut(s)	38, 1715, 2249, 2858
HaeII	RGCGCY	2 cut(s)	988, 1477
HaeIII	GGCC	6 cut(s)	65, 314, 1488, 1933, 2440, 2749
HapII	CCGG	7 cut(s)	62, 1184, 1267, 2496, 2786, 2877, 2892
HgaI	GACGC	3 cut(s)	18, 47, 1391
HhaI	GCGC	4 cut(s)	43, 987, 1476, 2830
Hin1I	GRCGYC	2 cut(s)	29, 1383
Hin6I	GCGC	4 cut(s)	41, 985, 1474, 2828
HinP1I	GCGC	4 cut(s)	41, 985, 1474, 2828
HindIII	AAGCTT	2 cut(s)	1124, 1682
HpaII	CCGG	7 cut(s)	62, 1184, 1267, 2496, 2786, 2877, 2892
HphI	GGTGA	8 cut(s)	383, 869, 1121, 1274, 1381, 2015, 2097, 2446
Hpy166II	GTNNAC	5 cut(s)	1032, 1142, 1314, 1982, 2126
Hpy8I	GTNNAC	5 cut(s)	1032, 1142, 1314, 1982, 2126
Hpy99I	CGWCG	2 cut(s)	41, 771
HpyAV	CCTTC	9 cut(s)	197, 301, 552, 739, 1914, 2383, 2386, 2621, 2857
HpyCH4III	ACNGT	8 cut(s)	169, 493, 1097, 1482, 1674, 1901, 1915, 1996
HpyCH4IV	ACGT	6 cut(s)	903, 1138, 1144, 1860, 2688, 2736
HpyF10VI	GCNNNNNNNGC	9 cut(s)	49, 232, 320, 1706, 1709, 1715, 2089, 2150, 2644
HpyF3I	CTNAG	8 cut(s)	158, 195, 305, 324, 948, 1658, 1786, 1866
HpySE526I	ACGT	6 cut(s)	903, 1138, 1144, 1860, 2688, 2736
Hsp92I	GRCGYC	2 cut(s)	29, 1383
HspAI	GCGC	4 cut(s)	41, 985, 1474, 2828
Kpn2I	TCCGGA	1 cut(s)	1183
KroI	GCCGGC	1 cut(s)	2876
KroNI	GCCGGC	1 cut(s)	2878
Ksp22I	TGATCA	1 cut(s)	1200
LmnI	GCTCC	9 cut(s)	691, 1571, 1603, 1629, 1708, 1849, 2032, 2174, 2366
LweI	GCATC	5 cut(s)	91, 463, 1033, 1405, 1792
MaeI	CTAG	3 cut(s)	918, 2078, 2277
MaeII	ACGT	6 cut(s)	903, 1138, 1144, 1860, 2688, 2736
MaeIII	GTNAC	9 cut(s)	371, 880, 892, 1238, 1262, 1990, 2452, 2720, 2737
MbiI	CCGCTC	2 cut(s)	713, 2169
MfeI	CAATTG	2 cut(s)	1272, 1731
MflI	RGATCY	9 cut(s)	154, 442, 496, 536, 645, 672, 1690, 2617, 2715
MhlI	GDGCHC	6 cut(s)	1173, 1626, 1935, 2037, 2128, 2190
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	1671, 2646
MmeI	TCCRAC	1 cut(s)	2219
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	2094
MroI	TCCGGA	1 cut(s)	1183
MroNI	GCCGGC	1 cut(s)	2876
MroXI	GAANNNNTTC	2 cut(s)	168, 2295
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	8 cut(s)	575, 785, 801, 1301, 2388, 2400, 2561, 2896
MslI	CAYNNNNRTG	4 cut(s)	1137, 1371, 1586, 1902
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	2069
MspCI	CTTAAG	1 cut(s)	1300
MspI	CCGG	7 cut(s)	62, 1184, 1267, 2496, 2786, 2877, 2892
MspR9I	CCNGG	7 cut(s)	264, 847, 1268, 1825, 2323, 2496, 2832
MunI	CAATTG	2 cut(s)	1272, 1731
Mva1269I	GAATGC	2 cut(s)	1643, 2094
MvaI	CCWGG	5 cut(s)	264, 847, 1825, 2323, 2832
MvnI	CGCG	4 cut(s)	41, 590, 1635, 2828
MwoI	GCNNNNNNNGC	9 cut(s)	49, 232, 320, 1706, 1709, 1715, 2089, 2150, 2644
NaeI	GCCGGC	1 cut(s)	2878
NciI	CCSGG	2 cut(s)	1268, 2496
NcoI	CCATGG	2 cut(s)	1587, 2309
NgoMIV	GCCGGC	1 cut(s)	2876
NlaIV	GGNNCC	8 cut(s)	60, 261, 1224, 1411, 1933, 2339, 2633, 2717
NmuCI	GTSAC	7 cut(s)	371, 892, 1262, 1990, 2452, 2720, 2737
NsiI	ATGCAT	1 cut(s)	2094
NspI	RCATGY	5 cut(s)	180, 304, 1541, 2384, 2416
OliI	CACNNNNGTG	1 cut(s)	1902
PagI	TCATGA	1 cut(s)	1773
PasI	CCCWGGG	1 cut(s)	263
PciI	ACATGT	1 cut(s)	1537
PctI	GAATGC	2 cut(s)	1643, 2094
PdiI	GCCGGC	1 cut(s)	2878
PdmI	GAANNNNTTC	2 cut(s)	168, 2295
PflMI	CCANNNNNTGG	1 cut(s)	1484
PfoI	TCCNGGA	1 cut(s)	845
PinAI	ACCGGT	1 cut(s)	2891
PleI	GAGTC	2 cut(s)	1670, 2646
PmaCI	CACGTG	1 cut(s)	1139
PmlI	CACGTG	1 cut(s)	1139
PpsI	GAGTC	2 cut(s)	1670, 2646
Ppu21I	YACGTR	1 cut(s)	1139
PpuMI	RGGWCCY	1 cut(s)	2632
PscI	ACATGT	1 cut(s)	1537
PshBI	ATTAAT	1 cut(s)	801
PsiI	TTATAA	1 cut(s)	1856
Psp124BI	GAGCTC	2 cut(s)	1626, 2037
Psp1406I	AACGTT	1 cut(s)	1144
Psp5II	RGGWCCY	1 cut(s)	2632
Psp6I	CCWGG	5 cut(s)	262, 845, 1823, 2321, 2830
PspCI	CACGTG	1 cut(s)	1139
PspEI	GGTNACC	2 cut(s)	1262, 2452
PspFI	CCCAGC	1 cut(s)	1805
PspGI	CCWGG	5 cut(s)	262, 845, 1823, 2321, 2830
PspN4I	GGNNCC	8 cut(s)	60, 261, 1224, 1411, 1933, 2339, 2633, 2717
PspOMI	GGGCCC	1 cut(s)	1931
PspPI	GGNCC	9 cut(s)	259, 331, 502, 1029, 1487, 1931, 1932, 2565, 2632
PspPPI	RGGWCCY	1 cut(s)	2632
PstI	CTGCAG	1 cut(s)	1822
PstNI	CAGNNNCTG	1 cut(s)	1793
PsuI	RGATCY	9 cut(s)	154, 442, 496, 536, 645, 672, 1690, 2617, 2715
PvuII	CAGCTG	1 cut(s)	2069
RsaI	GTAC	8 cut(s)	587, 664, 941, 1020, 1784, 2204, 2429, 2825
RsaNI	GTAC	8 cut(s)	586, 663, 940, 1019, 1783, 2203, 2428, 2824
RseI	CAYNNNNRTG	4 cut(s)	1137, 1371, 1586, 1902
SacI	GAGCTC	2 cut(s)	1626, 2037
SaqAI	TTAA	8 cut(s)	575, 785, 801, 1301, 2388, 2400, 2561, 2896
Sau96I	GGNCC	9 cut(s)	259, 331, 502, 1029, 1487, 1931, 1932, 2565, 2632
ScaI	AGTACT	1 cut(s)	2204
SchI	GAGTC	2 cut(s)	1671, 2646
ScrFI	CCNGG	7 cut(s)	264, 847, 1268, 1825, 2323, 2496, 2832
SduI	GDGCHC	6 cut(s)	1173, 1626, 1935, 2037, 2128, 2190
SfaNI	GCATC	5 cut(s)	91, 463, 1033, 1405, 1792
SfcI	CTRYAG	4 cut(s)	492, 1818, 1914, 2154
SinI	GGWCC	6 cut(s)	259, 331, 502, 1029, 2565, 2632
SmiMI	CAYNNNNRTG	4 cut(s)	1137, 1371, 1586, 1902
SmlI	CTYRAG	4 cut(s)	425, 459, 479, 1300
SmoI	CTYRAG	4 cut(s)	425, 459, 479, 1300
SsiI	CCGC	5 cut(s)	346, 713, 1961, 2167, 2656
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	3 cut(s)	918, 2078, 2277
SstI	GAGCTC	2 cut(s)	1626, 2037
StyD4I	CCNGG	7 cut(s)	262, 845, 1266, 1823, 2321, 2494, 2830
StyI	CCWWGG	4 cut(s)	1587, 1999, 2309, 2484
TaaI	ACNGT	8 cut(s)	169, 493, 1097, 1482, 1674, 1901, 1915, 1996
TaiI	ACGT	6 cut(s)	906, 1141, 1147, 1863, 2691, 2739
TaqI	TCGA	5 cut(s)	36, 471, 1230, 1341, 2199
TatI	WGTACW	4 cut(s)	939, 1018, 2202, 2427
Tru1I	TTAA	8 cut(s)	575, 785, 801, 1301, 2388, 2400, 2561, 2896
Tru9I	TTAA	8 cut(s)	575, 785, 801, 1301, 2388, 2400, 2561, 2896
TseFI	GTSAC	7 cut(s)	371, 892, 1262, 1990, 2452, 2720, 2737
Tsp45I	GTSAC	7 cut(s)	371, 892, 1262, 1990, 2452, 2720, 2737
TspGWI	ACGGA	8 cut(s)	570, 755, 992, 1520, 1765, 1976, 2198, 2708
Van91I	CCANNNNNTGG	1 cut(s)	1484
Vha464I	CTTAAG	1 cut(s)	1300
VneI	GTGCAC	1 cut(s)	2124
VpaK11BI	GGWCC	6 cut(s)	259, 331, 502, 1029, 2565, 2632
VspI	ATTAAT	1 cut(s)	801
XapI	RAATTY	5 cut(s)	388, 758, 1061, 1512, 1871
XceI	RCATGY	5 cut(s)	180, 304, 1541, 2384, 2416
XcmI	CCANNNNNNNNNTGG	3 cut(s)	143, 1904, 2115
XmnI	GAANNNNTTC	2 cut(s)	168, 2295
XspI	CTAG	3 cut(s)	918, 2078, 2277
ZrmI	AGTACT	1 cut(s)	2204
Zsp2I	ATGCAT	1 cut(s)	2094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.