pycom03g19940

Peptide methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013036
Physical Location & Seq
Forward (+)
20547878 .. 20550204
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
ATGGCGTCTTCTAGTTTTTGTTCGAGCTTACCCACAACAGCTGCTCGCATTTCCTCCAAAACCCAGTTCGTATCTGGCTTGAAATCCAAGAAATTAATTTTGGGTTCCCGATCTTTGGTCAAACCCCTGAGGCTTTTCTCCTCTGTTCGTCGTGTAATGGGTTCATCTGCTTCTTCCCCAGACAGAGCTCAAGGGACAGGTGTTGGTGATTACAAATCTGTAAGTGATCAAGAATGGAAGGAGAAACTCACAGAGGAACAGTTTTACGTTACTCGTAAAAAGGGAACCGAGAGGGCTTTCACTGGGGAATACTGGAATACGAAAACTAAGGGAACATACCATTGCATATGTTGTGACACACCTCTTTTTGAATCATCTACCAAATTCGATAGCGGAACTGGTTGGCCATCCTATTACCAGCCCATAGGTGACAATGTGAAGTCCAAGTTAGACTTGTCTATATTTATCATGCCTCGAACTGAAGTTCTTTGTGCCGCTTGTGATGCTCATCTCGGCCATGTCTTCGATGATGGTCCACCACCAACAGGAAAGCGTTACTGTATCAACAGTGCCTCCCTGAAACTAAAGCCAGAGTAG

Protein Analysis

199

Amino Acids

21.82

Weight (kDa)

9.23

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 83 - 197 1.3e-50 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53670 AT1G53670
fragaria_vesca FvH4_3g28950 FvH4_3g28950
malus_domestica MD03G1251900.v1.1
prunus_persica Prupe.4G154300_v2.0.a1 Prupe.4G154300_v2.0.a1
pyrus_communis pycom03g19940
rosa_chinensis RchiOBHm_Chr5g0051791
rosa_laevigata RLG00000034855
rosa_multiflora Rmu_sc0000068.1_g000007
rosa_roxburghii Rroxscaffold_1G00027330
rosa_rugosa Rorug05G0276900
rosa_samantha Rh5AG349100 Rh5BG360200 Rh5CG385200 Rh5DG374900
rosa_wichuraiana Rw5G032930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 393, 495
AcoI YGGCCR 2 cut(s) 404, 514
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 115, 545
AgsI TTSAA 2 cut(s) 82, 371
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 83, 115
AluBI AGCT 3 cut(s) 27, 41, 188
AluI AGCT 3 cut(s) 27, 41, 188
Alw21I GWGCWC 1 cut(s) 190
AoxI GGCC 2 cut(s) 404, 514
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 383
AseI ATTAAT 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 533
AsuHPI GGTGA 2 cut(s) 218, 440
AvaII GGWCC 1 cut(s) 533
AxyI CCTNAGG 1 cut(s) 128
BalI TGGCCA 1 cut(s) 406
BanII GRGCYC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 28
BccI CCATC 2 cut(s) 415, 524
BclI TGATCA 1 cut(s) 226
BfaI CTAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 42, 495
BlsI GCNGC 2 cut(s) 43, 496
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 2 cut(s) 106, 286
BmrI ACTGGG 2 cut(s) 58, 312
BmsI GCATC 1 cut(s) 493
BmuI ACTGGG 2 cut(s) 58, 312
BpiI GAAGAC 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 545
Bse1I ACTGG 4 cut(s) 64, 307, 317, 403
Bse21I CCTNAGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 507
BseGI GGATG 1 cut(s) 407
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 115, 545
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 4 cut(s) 64, 307, 317, 403
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 406, 516
BsiHKAI GWGCWC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 115, 545
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 2 cut(s) 406, 516
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 110, 226
BspACI CCGC 2 cut(s) 393, 495
BspANI GGCC 2 cut(s) 406, 516
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 106, 286
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 4 cut(s) 64, 307, 317, 403
BssMI GATC 2 cut(s) 110, 226
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 261, 560, 569
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 128, 327
BstF5I GGATG 1 cut(s) 407
BstKTI GATC 2 cut(s) 113, 229
BstMBI GATC 2 cut(s) 110, 226
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 514
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 2 cut(s) 406, 516
BtsCI GGATG 1 cut(s) 407
BtsIMutI CAGTG 2 cut(s) 300, 574
Cac8I GCNNGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 533
CviAII CATG 2 cut(s) 469, 518
DdeI CTNAG 2 cut(s) 128, 327
DpnI GATC 2 cut(s) 112, 228
DpnII GATC 2 cut(s) 110, 226
EaeI YGGCCR 2 cut(s) 404, 514
Ecl136II GAGCTC 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 190
FaeI CATG 2 cut(s) 472, 521
FaiI YATR 7 cut(s) 337, 347, 349, 425, 461, 470, 519
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 208
FatI CATG 2 cut(s) 468, 517
FauNDI CATATG 1 cut(s) 347
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 42, 495
FokI GGATG 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 2 cut(s) 42, 495
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 42, 495
HaeIII GGCC 2 cut(s) 406, 516
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 472, 521
HinfI GANTC 1 cut(s) 371
HphI GGTGA 2 cut(s) 218, 440
Hpy166II GTNNAC 1 cut(s) 536
Hpy188III TCNNGA 2 cut(s) 108, 230
Hpy8I GTNNAC 1 cut(s) 536
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 3 cut(s) 261, 560, 569
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 2 cut(s) 128, 327
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 472, 521
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 2 cut(s) 110, 226
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 493
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 4 cut(s) 268, 353, 428, 554
MalI GATC 2 cut(s) 112, 228
MboI GATC 2 cut(s) 110, 226
MboII GAAGA 2 cut(s) 165, 514
MhlI GDGCHC 1 cut(s) 190
MlsI TGGCCA 1 cut(s) 406
MluCI AATT 3 cut(s) 92, 96, 383
MluNI TGGCCA 1 cut(s) 406
MnlI CCTC 8 cut(s) 64, 123, 151, 247, 285, 372, 483, 583
Mox20I TGGCCA 1 cut(s) 406
MscI TGGCCA 1 cut(s) 406
MseI TTAA 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 503
NdeI CATATG 1 cut(s) 347
NdeII GATC 2 cut(s) 110, 226
NlaIII CATG 2 cut(s) 472, 521
NlaIV GGNNCC 2 cut(s) 106, 286
NmeAIII GCCGAG 1 cut(s) 492
NmuCI GTSAC 2 cut(s) 353, 428
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 43, 496
PshBI ATTAAT 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 106, 286
PspPI GGNCC 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 42, 495
Sau3AI GATC 2 cut(s) 110, 226
Sau96I GGNCC 1 cut(s) 533
SduI GDGCHC 1 cut(s) 190
SetI ASST 7 cut(s) 29, 43, 190, 202, 270, 364, 430
SfaNI GCATC 1 cut(s) 493
SinI GGWCC 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 3 cut(s) 92, 96, 383
SsiI CCGC 2 cut(s) 393, 495
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 190
TaaI ACNGT 3 cut(s) 261, 560, 569
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 23, 387, 475, 525
TasI AATT 3 cut(s) 92, 96, 383
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 2 cut(s) 307, 574
TseFI GTSAC 2 cut(s) 353, 428
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 2 cut(s) 353, 428
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 2 cut(s) 307, 574
VpaK11BI GGWCC 1 cut(s) 533
VspI ATTAAT 1 cut(s) 95
XapI RAATTY 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.