pycom04g01840

transport protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
1674468 .. 1678098
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g01840.1

Sequence Viewer

Length: 1272 bp
ATGTCGGAGATGGCGAACACTGACGCGGAAGGGATCGACGGAGTTCGGATGACATGGAACGTCTGGCCGCGCACCAAGGTGGAGGCCAGCAAGTGCGTGATCCCACTGGCCGCCTGCATCGCTCCGATCCGCTCCCACCCTGACATCCCCACGCTCCCCTACGCGCCGCTCCGCTGCAAGACCTGCTCTGCCGCGCTCAACCCTTTTGCGCGCGTCGACTTCACCGCCAAGATCTGGATCTGCCCTTTCTGCTACCAGCGCAACCACTTCCCGCCTCACTACGCCGCGATCTCCGAGACCAACCTCCCCGGTGAGCTATACCCTCAGTACACCACCCTCCAATACGCTCTGCCGACGGATTCCTCTGCCCCTCAATCTCTGCCGTCCCCGGTCTTTCTCTTCGTGCTCGACACGTGTATGATCGAGGAGGAGATGGGATATGTCAAATCGGCGCTCAAAAGGGCAATTGGGTTGCTGCCCGATAATGCGCTTGTTGGGTTCGTTTCGTATGGGACCCAAGTTCAGGTCCATGAATTGGGGTTCTCTGATTTGTCGAAAGTGTATGTCTTTCGGGGGAGTAAGGAGATTTCAAAGGAACACGTTTTGGAGCAATTGGGTCTCGGCAATTTGGGTCGGAGACCTGGTCCAATTGGTGGCGGAGGGTACCAGCTGAAGGGGGTACAAAATGGACTTCCCAATGCTGGTGTGACCCGGTTCTTGTTGCCCGCTTCGGATTGCGAATACACATTGAACACGTTGTTGGATGAATTGCAAACGGACCAGTGGCCTGTGCCGCAAGGAAGCCGTGCTTCCAGGTGCACAGGAGTGGCTTTGAGTGTTGCTGCCGGGTTACTTGGAGCTTGTGTGCCTGGAACTGGGGCTCGCATTGTAGCTTTGGTTGGCGGTCCATGCACTGAAGGGCCTGGCGCGATTGTATCGAAAGATTTATCAGATCCAGTACGTTCCCATAAGGATCTGGATAAGGATGCAGCACCATACTTTAAGAAAGCAATCAAATTTTATGAAAATCTTGCAAAGCAGCTGGTTAGCCAGGGCCATGTCTTGGACCTGTTTGCATCTGCACTCGATCAGGTTGGGGTTGCAGAAATGAAAGTTGCAATTGAAAGAACTGGTGGGCTTGTTGTTCTGGCAGAAAGTTTTGGTCATTCTGTATTCAAAGACTCTTTCAAGCGTGTTTTTGAAGAAGGGGAACAGTCGCTTGGCCTTTTTGTTTCAGTGGTACGCTTGAGATCAACTGTTCTAAGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

424

Amino Acids

45.75

Weight (kDa)

6.71

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 56 - 94 1.5e-16 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 129 - 400 4.9e-65 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 663
AccB1I GGYRCC 1 cut(s) 663
AccB7I CCANNNNNTGG 4 cut(s) 234, 535, 653, 1063
AccBSI CCGCTC 2 cut(s) 132, 169
AccI GTMKAC 1 cut(s) 216
AccII CGCG 8 cut(s) 26, 70, 164, 194, 211, 213, 287, 929
AclWI GGATC 6 cut(s) 41, 94, 121, 245, 947, 981
AcoI YGGCCR 2 cut(s) 65, 108
AcsI RAATTY 1 cut(s) 1016
AcuI CTGAAG 2 cut(s) 692, 936
AcvI CACGTG 1 cut(s) 414
AfaI GTAC 5 cut(s) 329, 665, 681, 960, 1242
AfiI CCNNNNNNNGG 8 cut(s) 234, 523, 535, 653, 673, 701, 875, 1063
AflIII ACRYGT 4 cut(s) 411, 413, 598, 753
AgsI TTSAA 6 cut(s) 591, 751, 1124, 1177, 1189, 1202
AjnI CCWGG 5 cut(s) 640, 812, 868, 922, 1050
AjuI GAANNNNNNNTTGG 4 cut(s) 743, 775, 1203, 1235
AleI CACNNNNGTG 2 cut(s) 77, 824
AluBI AGCT 5 cut(s) 316, 670, 860, 893, 1042
AluI AGCT 5 cut(s) 316, 670, 860, 893, 1042
Alw21I GWGCWC 2 cut(s) 408, 821
Alw26I GTCTC 3 cut(s) 290, 623, 631
Alw44I GTGCAC 1 cut(s) 817
AlwI GGATC 6 cut(s) 41, 94, 121, 245, 947, 981
AoxI GGCC 7 cut(s) 65, 84, 108, 785, 920, 1054, 1222
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 5 cut(s) 174, 475, 842, 989, 1039
ApoI RAATTY 1 cut(s) 1016
Asp718I GGTACC 1 cut(s) 663
AspLEI GCGC 9 cut(s) 72, 166, 196, 211, 213, 261, 454, 490, 929
AspS9I GGNCC 8 cut(s) 513, 526, 644, 778, 905, 920, 1054, 1066
AsuC2I CCSGG 4 cut(s) 309, 389, 712, 847
AsuHPI GGTGA 2 cut(s) 214, 323
AvaII GGWCC 6 cut(s) 513, 526, 644, 778, 905, 1066
BaeGI GKGCMC 1 cut(s) 821
BanI GGYRCC 1 cut(s) 663
BanII GRGCYC 1 cut(s) 883
BbrPI CACGTG 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 408, 821
BbvI GCAGC 5 cut(s) 161, 462, 829, 1001, 1051
BccI CCATC 2 cut(s) 4, 427
BceAI ACGGC 2 cut(s) 367, 789
BciT130I CCWGG 5 cut(s) 642, 814, 870, 924, 1052
BcnI CCSGG 4 cut(s) 309, 389, 712, 847
BcoDI GTCTC 3 cut(s) 290, 623, 631
BfoI RGCGCY 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 191
BglII AGATCT 1 cut(s) 231
Bme1390I CCNGG 9 cut(s) 309, 389, 642, 712, 814, 847, 870, 924, 1052
Bme18I GGWCC 6 cut(s) 513, 526, 644, 778, 905, 1066
BmgT120I GGNCC 8 cut(s) 513, 526, 644, 778, 905, 920, 1054, 1066
BmiI GGNNCC 3 cut(s) 514, 515, 665
BmrFI CCNGG 9 cut(s) 309, 389, 642, 712, 814, 847, 870, 924, 1052
BmrI ACTGGG 1 cut(s) 885
BmsI GCATC 3 cut(s) 126, 976, 1085
BmuI ACTGGG 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 1267
BpuMI CCSGG 4 cut(s) 309, 389, 712, 847
BsaAI YACGTR 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 236
BsaI GGTCTC 3 cut(s) 290, 623, 631
BsaJI CCNNGG 4 cut(s) 75, 307, 387, 1051
BsaXI ACNNNNNCTCC 4 cut(s) 628, 658, 849, 879
Bsc4I CCNNNNNNNGG 8 cut(s) 234, 523, 535, 653, 673, 701, 875, 1063
Bse1I ACTGG 5 cut(s) 111, 781, 880, 956, 1135
Bse8I GATNNNNATC 1 cut(s) 236
BseBI CCWGG 5 cut(s) 642, 814, 870, 924, 1052
BseDI CCNNGG 4 cut(s) 75, 307, 387, 1051
BseGI GGATG 4 cut(s) 54, 144, 769, 991
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 8 cut(s) 234, 523, 535, 653, 673, 701, 875, 1063
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 5 cut(s) 111, 781, 880, 956, 1135
BsePI GCGCGC 1 cut(s) 209
BseRI GAGGAG 2 cut(s) 440, 443
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 5 cut(s) 161, 462, 829, 1001, 1051
BsgI GTGCAG 1 cut(s) 1065
Bsh1236I CGCG 8 cut(s) 26, 70, 164, 194, 211, 213, 287, 929
BshFI GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
BshNI GGYRCC 1 cut(s) 663
BsiHKAI GWGCWC 2 cut(s) 408, 821
BsiSI CCGG 4 cut(s) 309, 389, 712, 846
BslFI GGGAC 2 cut(s) 370, 526
BslI CCNNNNNNNGG 8 cut(s) 234, 523, 535, 653, 673, 701, 875, 1063
BsmAI GTCTC 3 cut(s) 290, 623, 631
BsmFI GGGAC 2 cut(s) 370, 526
BsnI GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
Bso31I GGTCTC 3 cut(s) 290, 623, 631
Bsp1286I GDGCHC 3 cut(s) 408, 821, 883
BspANI GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 8 cut(s) 26, 70, 164, 194, 211, 213, 287, 929
BspLI GGNNCC 3 cut(s) 514, 515, 665
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 6 cut(s) 41, 94, 121, 245, 947, 981
BspT107I GGYRCC 1 cut(s) 663
BspTNI GGTCTC 3 cut(s) 290, 623, 631
BsrBI CCGCTC 2 cut(s) 132, 169
BsrI ACTGG 5 cut(s) 111, 781, 880, 956, 1135
BssECI CCNNGG 4 cut(s) 75, 307, 387, 1051
BssHII GCGCGC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 5 cut(s) 642, 814, 870, 924, 1052
Bst4CI ACNGT 2 cut(s) 1215, 1258
Bst6I CTCTTC 1 cut(s) 404
BstAPI GCANNNNNTGC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 414
BstC8I GCNNGC 5 cut(s) 88, 115, 211, 726, 883
BstDEI CTNAG 2 cut(s) 324, 1262
BstF5I GGATG 4 cut(s) 54, 144, 769, 991
BstFNI CGCG 8 cut(s) 26, 70, 164, 194, 211, 213, 287, 929
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 9 cut(s) 72, 166, 196, 211, 213, 261, 454, 490, 929
BstMAI GTCTC 3 cut(s) 290, 623, 631
BstMWI GCNNNNNNNGC 6 cut(s) 119, 183, 249, 258, 793, 909
BstNI CCWGG 5 cut(s) 642, 814, 870, 924, 1052
BstSCI CCNGG 9 cut(s) 307, 387, 640, 710, 812, 845, 868, 922, 1050
BstSLI GKGCMC 1 cut(s) 821
BstUI CGCG 8 cut(s) 26, 70, 164, 194, 211, 213, 287, 929
BstV1I GCAGC 5 cut(s) 161, 462, 829, 1001, 1051
BstX2I RGATCY 4 cut(s) 231, 237, 952, 973
BstYI RGATCY 4 cut(s) 231, 237, 952, 973
BsuRI GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 4 cut(s) 54, 144, 769, 991
BtsIMutI CAGTG 5 cut(s) 18, 104, 788, 912, 1242
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 5 cut(s) 88, 115, 211, 726, 883
CfoI GCGC 9 cut(s) 72, 166, 196, 211, 213, 261, 454, 490, 929
Cfr13I GGNCC 8 cut(s) 513, 526, 644, 778, 905, 920, 1054, 1066
CseI GACGC 2 cut(s) 32, 202
CsiI ACCWGGT 1 cut(s) 640
Csp6I GTAC 5 cut(s) 328, 664, 680, 959, 1241
CviAII CATG 4 cut(s) 54, 530, 909, 1058
CviQI GTAC 5 cut(s) 328, 664, 680, 959, 1241
DdeI CTNAG 2 cut(s) 324, 1262
EaeI YGGCCR 2 cut(s) 65, 108
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
EciI GGCGGA 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 883
Eco31I GGTCTC 3 cut(s) 290, 623, 631
Eco47I GGWCC 6 cut(s) 513, 526, 644, 778, 905, 1066
Eco57I CTGAAG 2 cut(s) 692, 936
Eco72I CACGTG 1 cut(s) 414
EcoO109I RGGNCCY 2 cut(s) 513, 920
EcoRII CCWGG 5 cut(s) 640, 812, 868, 922, 1050
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 883
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 4 cut(s) 57, 533, 912, 1061
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FaqI GGGAC 2 cut(s) 370, 526
FatI CATG 4 cut(s) 53, 529, 908, 1057
FauI CCCGC 2 cut(s) 279, 733
FblI GTMKAC 1 cut(s) 216
FokI GGATG 4 cut(s) 61, 131, 776, 998
FriOI GRGCYC 1 cut(s) 883
GlaI GCGC 9 cut(s) 71, 165, 195, 210, 212, 260, 453, 489, 928
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 7 cut(s) 67, 86, 110, 787, 922, 1056, 1224
HapII CCGG 4 cut(s) 309, 389, 712, 846
HgaI GACGC 2 cut(s) 32, 202
HhaI GCGC 9 cut(s) 72, 166, 196, 211, 213, 261, 454, 490, 929
Hin1II CATG 4 cut(s) 57, 533, 912, 1061
Hin6I GCGC 9 cut(s) 70, 164, 194, 209, 211, 259, 452, 488, 927
HinP1I GCGC 9 cut(s) 70, 164, 194, 209, 211, 259, 452, 488, 927
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 359, 1181
HpaII CCGG 4 cut(s) 309, 389, 712, 846
HphI GGTGA 2 cut(s) 214, 323
Hpy166II GTNNAC 3 cut(s) 217, 330, 819
Hpy188I TCNGA 8 cut(s) 7, 48, 126, 295, 547, 636, 733, 952
Hpy188III TCNNGA 2 cut(s) 235, 977
Hpy8I GTNNAC 3 cut(s) 217, 330, 819
Hpy99I CGWCG 3 cut(s) 41, 218, 358
HpyAV CCTTC 4 cut(s) 23, 667, 911, 1199
HpyCH4III ACNGT 2 cut(s) 1215, 1258
HpyCH4IV ACGT 5 cut(s) 60, 413, 600, 755, 961
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 183, 249, 258, 793, 909
HpyF3I CTNAG 2 cut(s) 324, 1262
HpySE526I ACGT 5 cut(s) 60, 413, 600, 755, 961
Hsp92II CATG 4 cut(s) 57, 533, 912, 1061
HspAI GCGC 9 cut(s) 70, 164, 194, 209, 211, 259, 452, 488, 927
KflI GGGWCCC 1 cut(s) 513
KpnI GGTACC 1 cut(s) 667
LmnI GCTCC 6 cut(s) 127, 137, 159, 174, 607, 857
Lsp1109I GCAGC 5 cut(s) 161, 462, 829, 1001, 1051
LweI GCATC 3 cut(s) 126, 976, 1085
MabI ACCWGGT 1 cut(s) 640
MaeII ACGT 5 cut(s) 60, 413, 600, 755, 961
MaeIII GTNAC 2 cut(s) 706, 849
MbiI CCGCTC 2 cut(s) 132, 169
MboII GAAGA 2 cut(s) 391, 1214
MfeI CAATTG 4 cut(s) 465, 611, 648, 1119
MflI RGATCY 4 cut(s) 231, 237, 952, 973
MhlI GDGCHC 3 cut(s) 408, 821, 883
MluCI AATT 8 cut(s) 465, 533, 611, 625, 648, 767, 1016, 1119
MlyI GAGTC 1 cut(s) 1175
MmeI TCCRAC 2 cut(s) 614, 741
MseI TTAA 1 cut(s) 1002
MslI CAYNNNNRTG 3 cut(s) 77, 416, 824
MspA1I CMGCKG 3 cut(s) 174, 670, 1042
MspI CCGG 4 cut(s) 309, 389, 712, 846
MspR9I CCNGG 9 cut(s) 309, 389, 642, 712, 814, 847, 870, 924, 1052
MunI CAATTG 4 cut(s) 465, 611, 648, 1119
MvaI CCWGG 5 cut(s) 642, 814, 870, 924, 1052
MvnI CGCG 8 cut(s) 26, 70, 164, 194, 211, 213, 287, 929
MwoI GCNNNNNNNGC 6 cut(s) 119, 183, 249, 258, 793, 909
NciI CCSGG 4 cut(s) 309, 389, 712, 847
NlaIII CATG 4 cut(s) 57, 533, 912, 1061
NlaIV GGNNCC 3 cut(s) 514, 515, 665
NmeAIII GCCGAG 1 cut(s) 600
NmuCI GTSAC 1 cut(s) 706
OliI CACNNNNGTG 2 cut(s) 77, 824
PauI GCGCGC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 1 cut(s) 359
PflFI GACNNNGTC 1 cut(s) 642
PflMI CCANNNNNTGG 4 cut(s) 234, 535, 653, 1063
PleI GAGTC 1 cut(s) 1175
PmaCI CACGTG 1 cut(s) 414
PmlI CACGTG 1 cut(s) 414
PpsI GAGTC 1 cut(s) 1175
Ppu21I YACGTR 1 cut(s) 414
PpuMI RGGWCCY 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 513
Psp6I CCWGG 5 cut(s) 640, 812, 868, 922, 1050
PspCI CACGTG 1 cut(s) 414
PspGI CCWGG 5 cut(s) 640, 812, 868, 922, 1050
PspN4I GGNNCC 3 cut(s) 514, 515, 665
PspPI GGNCC 8 cut(s) 513, 526, 644, 778, 905, 920, 1054, 1066
PspPPI RGGWCCY 1 cut(s) 513
PsuI RGATCY 4 cut(s) 231, 237, 952, 973
PsyI GACNNNGTC 1 cut(s) 642
PteI GCGCGC 1 cut(s) 209
PvuII CAGCTG 2 cut(s) 670, 1042
RsaI GTAC 5 cut(s) 329, 665, 681, 960, 1242
RsaNI GTAC 5 cut(s) 328, 664, 680, 959, 1241
RseI CAYNNNNRTG 3 cut(s) 77, 416, 824
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 1002
Sau96I GGNCC 8 cut(s) 513, 526, 644, 778, 905, 920, 1054, 1066
SchI GAGTC 1 cut(s) 1175
ScrFI CCNGG 9 cut(s) 309, 389, 642, 712, 814, 847, 870, 924, 1052
SduI GDGCHC 3 cut(s) 408, 821, 883
SexAI ACCWGGT 1 cut(s) 640
SfaNI GCATC 3 cut(s) 126, 976, 1085
SinI GGWCC 6 cut(s) 513, 526, 644, 778, 905, 1066
SmiMI CAYNNNNRTG 3 cut(s) 77, 416, 824
SmlI CTYRAG 1 cut(s) 1246
SmoI CTYRAG 1 cut(s) 1246
Sse9I AATT 8 cut(s) 465, 533, 611, 625, 648, 767, 1016, 1119
StyD4I CCNGG 9 cut(s) 307, 387, 640, 710, 812, 845, 868, 922, 1050
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 1215, 1258
TaiI ACGT 5 cut(s) 63, 416, 603, 758, 964
TaqI TCGA 7 cut(s) 36, 216, 408, 423, 554, 938, 1086
TasI AATT 8 cut(s) 465, 533, 611, 625, 648, 767, 1016, 1119
TatI WGTACW 1 cut(s) 327
TauI GCSGC 6 cut(s) 70, 113, 169, 194, 287, 796
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 1002
Tru9I TTAA 1 cut(s) 1002
TscAI CASTG 5 cut(s) 25, 111, 788, 919, 1242
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 5 cut(s) 174, 475, 842, 989, 1039
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 4 cut(s) 546, 780, 1038, 1124
TspGWI ACGGA 3 cut(s) 54, 371, 791
TspRI CASTG 5 cut(s) 25, 111, 788, 919, 1242
Tth111I GACNNNGTC 1 cut(s) 642
Van91I CCANNNNNTGG 4 cut(s) 234, 535, 653, 1063
VneI GTGCAC 1 cut(s) 817
VpaK11BI GGWCC 6 cut(s) 513, 526, 644, 778, 905, 1066
XapI RAATTY 1 cut(s) 1016
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.