Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012813

Physical Location & Seq

Genomic Coordinates Reverse (-)

13357308 .. 13358225

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCAGTCATCTCCAAACGCTCCCTCACAAACTCCCGAAGAATGCCCGAACTCTTCGGCATTCGCCTAGGCGCTGTCCTCGTCACGGGCATCATCCTAGCCACCATGTTTTGGCACCTAGACAGTTCCCCAAAAGGCATCAAAGAGCGCTTAGGGTTCTTCGCATTCACCATGTCCACCACATTCTACACTTGCGCTGAGGCCATCCCCAGCTTCCTCCAAGAACGCTACATTTTCATGCGCGAAACCGCATACAATGCCTACCGCCGGTCCTCATACGTCCTAGCTCATTCCCTAATCTCCATTCCCTCCCTAGCCTTCCTCTCCTTAACCTTTGCCGCCACGACCTTCTGGGCCGTGGGGCTCGCTGGCGGGCTCCATGGCTTCCTCTTCTTCTTTTTCACTATTTTCGCGGCCTTCTGGGCCGGAAGCTCATTCGTCACATTCCTATCAGGCGTCGTGACACATGTCATGTTGGGGTACACAGTTGTGGTGGCAATTCTAGCCTACTTCCTACTCTTTAGTGGATTCTTCATAAGTAGAGATAAAATCCCACCCTATTGGCTTTGGTTTCACTACATGTCCCTAGTCAAGTACCCATATGAGGGTGCTTTGCAAAACGAGTTTGATGATCCAATCAAGTGCTTCGTGACGGGCACCCAGATGTTCGACAACTCACCACTAGGAGCCTTCCCGGTGGCGATGAAGTTGAAGCTTCTCAAGAGCATGAGCACAACTTTGGGCGTGAACATCACGGCGTCCACCTGCGTGACCACCGGAGCAGATATACTGAAGCAACAAGGGATCACGGACCTCAATAAATGGAGTTGCTTGTGGATCACCATTGCTTTGGGGTTCTTCTTTAGGATTCTCTTTTACCTTACCTTGTTGTTGGGCAGTAAAAATAAGAGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019438 GO:0019748 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044237 GO:0044249 GO:0044425 GO:0044464 GO:0044550 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

306

Amino Acids

34.39

Weight (kDa)

9.65

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	3 - 209	7.8e-45	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37360 AT3G53510
fragaria_vesca	FvH4_6g14770
malus_domestica	MD04G1116300.v1.1 MD12G1132000.v1.1
prunus_persica	Prupe.6G246200_v2.0.a1
pyrus_communis	pycom04g10630 pycom12g12800
rosa_chinensis	RchiOBHm_Chr3g0467991
rosa_laevigata	RLG00000024461
rosa_multiflora	Rmu_co8482947.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413230
rosa_rugosa	Rorug03G0090900
rosa_samantha	Rh3AG139700 Rh3BG161200 Rh3CG161100 Rh3DG161600
rosa_wichuraiana	Rw3G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	1 cut(s)	773
AccB1I	GGYRCC	2 cut(s)	114, 656
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccII	CGCG	2 cut(s)	243, 413
AciI	CCGC	5 cut(s)	249, 265, 339, 372, 413
AclWI	GGATC	3 cut(s)	626, 812, 845
AcuI	CTGAAG	1 cut(s)	812
AcyI	GRCGYC	2 cut(s)	456, 758
AfaI	GTAC	2 cut(s)	482, 596
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	5 cut(s)	85, 111, 267, 604, 605
AflIII	ACRYGT	2 cut(s)	466, 579
AgsI	TTSAA	1 cut(s)	712
AleI	CACNNNNGTG	2 cut(s)	488, 767
AluBI	AGCT	4 cut(s)	213, 287, 432, 715
AluI	AGCT	4 cut(s)	213, 287, 432, 715
Alw21I	GWGCWC	1 cut(s)	734
AlwI	GGATC	3 cut(s)	626, 812, 845
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	4 cut(s)	201, 354, 414, 423
AspA2I	CCTAGG	1 cut(s)	67
AspLEI	GCGC	4 cut(s)	74, 150, 197, 243
AspS9I	GGNCC	4 cut(s)	270, 354, 423, 811
AsuC2I	CCSGG	1 cut(s)	695
AsuHPI	GGTGA	3 cut(s)	160, 669, 832
AvaII	GGWCC	2 cut(s)	270, 811
AvrII	CCTAGG	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	659
BanI	GGYRCC	2 cut(s)	114, 656
BanII	GRGCYC	2 cut(s)	366, 378
Bbv12I	GWGCWC	1 cut(s)	734
BbvCI	CCTCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	2 cut(s)	341, 771
BcnI	CCSGG	1 cut(s)	695
BfaI	CTAG	8 cut(s)	68, 98, 119, 284, 314, 503, 587, 683
BfoI	RGCGCY	2 cut(s)	75, 151
BfuAI	ACCTGC	1 cut(s)	773
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	2 cut(s)	339, 414
BlnI	CCTAGG	1 cut(s)	67
BlsI	GCNGC	2 cut(s)	340, 415
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	2 cut(s)	270, 811
BmgT120I	GGNCC	4 cut(s)	270, 354, 423, 811
BmiI	GGNNCC	4 cut(s)	116, 377, 658, 688
BmrFI	CCNGG	1 cut(s)	695
BmsI	GCATC	2 cut(s)	99, 147
BoxI	GACNNNNGTC	1 cut(s)	467
Bpu10I	CCTNAGC	2 cut(s)	151, 198
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	695
BsaHI	GRCGYC	2 cut(s)	456, 758
BsaJI	CCNNGG	3 cut(s)	67, 357, 379
BsaWI	WCCGGW	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 111, 267, 604, 605
Bse118I	RCCGGY	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	67, 357, 379
BseGI	GGATG	2 cut(s)	93, 204
BseLI	CCNNNNNNNGG	5 cut(s)	85, 111, 267, 604, 605
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	659
BseYI	CCCAGC	1 cut(s)	209
Bsh1236I	CGCG	2 cut(s)	243, 413
BshFI	GGCC	4 cut(s)	203, 356, 416, 425
BshNI	GGYRCC	2 cut(s)	114, 656
BsiHKAI	GWGCWC	1 cut(s)	734
BsiSI	CCGG	4 cut(s)	268, 426, 695, 777
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	5 cut(s)	85, 111, 267, 604, 605
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	3 cut(s)	48, 60, 164
BsnI	GGCC	4 cut(s)	203, 356, 416, 425
Bsp1286I	GDGCHC	4 cut(s)	366, 378, 659, 734
Bsp143I	GATC	3 cut(s)	631, 804, 837
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	5 cut(s)	249, 265, 339, 372, 413
BspANI	GGCC	4 cut(s)	203, 356, 416, 425
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	2 cut(s)	243, 413
BspLI	GGNNCC	4 cut(s)	116, 377, 658, 688
BspMI	ACCTGC	1 cut(s)	773
BspPI	GGATC	3 cut(s)	626, 812, 845
BspT107I	GGYRCC	2 cut(s)	114, 656
BsrDI	GCAATG	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	67, 357, 379
BssMI	GATC	3 cut(s)	631, 804, 837
BssNI	GRCGYC	2 cut(s)	456, 758
BssT1I	CCWWGG	2 cut(s)	67, 379
Bst4CI	ACNGT	2 cut(s)	125, 487
Bst6I	CTCTTC	2 cut(s)	59, 395
BstACI	GRCGYC	2 cut(s)	456, 758
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	366, 370, 374
BstDEI	CTNAG	2 cut(s)	151, 198
BstDSI	CCRYGG	2 cut(s)	357, 379
BstF5I	GGATG	2 cut(s)	93, 204
BstFNI	CGCG	2 cut(s)	243, 413
BstH2I	RGCGCY	2 cut(s)	75, 151
BstHHI	GCGC	4 cut(s)	74, 150, 197, 243
BstKTI	GATC	3 cut(s)	634, 807, 840
BstMBI	GATC	3 cut(s)	631, 804, 837
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 422, 503
BstNSI	RCATGY	2 cut(s)	470, 583
BstPAI	GACNNNNGTC	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	659
BstUI	CGCG	2 cut(s)	243, 413
BstXI	CCANNNNNNTGG	2 cut(s)	561, 850
BsuRI	GGCC	4 cut(s)	203, 356, 416, 425
BtgI	CCRYGG	2 cut(s)	357, 379
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	2 cut(s)	93, 204
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	3 cut(s)	366, 370, 374
CfoI	GCGC	4 cut(s)	74, 150, 197, 243
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	4 cut(s)	270, 354, 423, 811
CseI	GACGC	2 cut(s)	445, 747
Csp6I	GTAC	2 cut(s)	481, 595
CviAII	CATG	8 cut(s)	106, 172, 238, 380, 467, 472, 580, 727
CviQI	GTAC	2 cut(s)	481, 595
DdeI	CTNAG	2 cut(s)	151, 198
DpnI	GATC	3 cut(s)	633, 806, 839
DpnII	GATC	3 cut(s)	631, 804, 837
Eam1104I	CTCTTC	2 cut(s)	59, 395
EarI	CTCTTC	2 cut(s)	59, 395
Eco130I	CCWWGG	2 cut(s)	67, 379
Eco24I	GRGCYC	2 cut(s)	366, 378
Eco47I	GGWCC	2 cut(s)	270, 811
Eco47III	AGCGCT	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	812
EcoT14I	CCWWGG	2 cut(s)	67, 379
EcoT38I	GRGCYC	2 cut(s)	366, 378
ErhI	CCWWGG	2 cut(s)	67, 379
FaeI	CATG	8 cut(s)	109, 175, 241, 383, 470, 475, 583, 730
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	8 cut(s)	105, 171, 237, 379, 466, 471, 579, 726
FauI	CCCGC	1 cut(s)	365
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	339, 414
FokI	GGATG	2 cut(s)	80, 191
FriOI	GRGCYC	2 cut(s)	366, 378
Fsp4HI	GCNGC	2 cut(s)	339, 414
FspBI	CTAG	8 cut(s)	68, 98, 119, 284, 314, 503, 587, 683
GlaI	GCGC	4 cut(s)	73, 149, 196, 242
GluI	GCNGC	2 cut(s)	339, 414
GsaI	CCCAGC	1 cut(s)	213
HaeII	RGCGCY	2 cut(s)	75, 151
HaeIII	GGCC	4 cut(s)	203, 356, 416, 425
HapII	CCGG	4 cut(s)	268, 426, 695, 777
HgaI	GACGC	2 cut(s)	445, 747
HhaI	GCGC	4 cut(s)	74, 150, 197, 243
Hin1I	GRCGYC	2 cut(s)	456, 758
Hin1II	CATG	8 cut(s)	109, 175, 241, 383, 470, 475, 583, 730
Hin6I	GCGC	4 cut(s)	72, 148, 195, 241
HinP1I	GCGC	4 cut(s)	72, 148, 195, 241
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	2 cut(s)	528, 868
HpaII	CCGG	4 cut(s)	268, 426, 695, 777
HphI	GGTGA	3 cut(s)	160, 669, 832
Hpy166II	GTNNAC	4 cut(s)	177, 483, 748, 762
Hpy188III	TCNNGA	4 cut(s)	36, 460, 649, 721
Hpy8I	GTNNAC	4 cut(s)	177, 483, 748, 762
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	4 cut(s)	328, 358, 427, 700
HpyCH4III	ACNGT	2 cut(s)	125, 487
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 422, 503
HpyF3I	CTNAG	2 cut(s)	151, 198
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	2 cut(s)	456, 758
Hsp92II	CATG	8 cut(s)	109, 175, 241, 383, 470, 475, 583, 730
HspAI	GCGC	4 cut(s)	72, 148, 195, 241
Kzo9I	GATC	3 cut(s)	631, 804, 837
LmnI	GCTCC	4 cut(s)	26, 381, 686, 779
LweI	GCATC	2 cut(s)	99, 147
MaeI	CTAG	8 cut(s)	68, 98, 119, 284, 314, 503, 587, 683
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	5 cut(s)	82, 439, 460, 649, 769
MalI	GATC	3 cut(s)	633, 806, 839
MboI	GATC	3 cut(s)	631, 804, 837
MboII	GAAGA	7 cut(s)	46, 51, 151, 382, 385, 523, 850
MhlI	GDGCHC	4 cut(s)	366, 378, 659, 734
MluCI	AATT	1 cut(s)	498
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	4 cut(s)	236, 488, 662, 767
MspI	CCGG	4 cut(s)	268, 426, 695, 777
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	3 cut(s)	48, 60, 164
MvnI	CGCG	2 cut(s)	243, 413
MwoI	GCNNNNNNNGC	3 cut(s)	257, 422, 503
NciI	CCSGG	1 cut(s)	695
NcoI	CCATGG	1 cut(s)	379
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	3 cut(s)	631, 804, 837
NlaIII	CATG	8 cut(s)	109, 175, 241, 383, 470, 475, 583, 730
NlaIV	GGNNCC	4 cut(s)	116, 377, 658, 688
NmuCI	GTSAC	5 cut(s)	82, 439, 460, 649, 769
NspI	RCATGY	2 cut(s)	470, 583
OliI	CACNNNNGTG	2 cut(s)	488, 767
PaqCI	CACCTGC	1 cut(s)	773
PciI	ACATGT	2 cut(s)	466, 579
PctI	GAATGC	3 cut(s)	48, 60, 164
PfeI	GAWTC	2 cut(s)	528, 868
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	340, 415
PscI	ACATGT	2 cut(s)	466, 579
PshAI	GACNNNNGTC	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	209
PspN4I	GGNNCC	4 cut(s)	116, 377, 658, 688
PspPI	GGNCC	4 cut(s)	270, 354, 423, 811
RsaI	GTAC	2 cut(s)	482, 596
RsaNI	GTAC	2 cut(s)	481, 595
RseI	CAYNNNNRTG	4 cut(s)	236, 488, 662, 767
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	339, 414
Sau3AI	GATC	3 cut(s)	631, 804, 837
Sau96I	GGNCC	4 cut(s)	270, 354, 423, 811
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	4 cut(s)	366, 378, 659, 734
SfaNI	GCATC	2 cut(s)	99, 147
SfiI	GGCCNNNNNGGCC	1 cut(s)	422
SinI	GGWCC	2 cut(s)	270, 811
SmiMI	CAYNNNNRTG	4 cut(s)	236, 488, 662, 767
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
Sse9I	AATT	1 cut(s)	498
SsiI	CCGC	5 cut(s)	249, 265, 339, 372, 413
SspMI	CTAG	8 cut(s)	68, 98, 119, 284, 314, 503, 587, 683
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	67, 379
TaaI	ACNGT	2 cut(s)	125, 487
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	669
TasI	AATT	1 cut(s)	498
TauI	GCSGC	2 cut(s)	341, 416
TfiI	GAWTC	2 cut(s)	528, 868
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseFI	GTSAC	5 cut(s)	82, 439, 460, 649, 769
Tsp45I	GTSAC	5 cut(s)	82, 439, 460, 649, 769
TspDTI	ATGAA	3 cut(s)	226, 523, 719
TspGWI	ACGGA	1 cut(s)	824
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	270, 811
XceI	RCATGY	2 cut(s)	470, 583
XmaJI	CCTAGG	1 cut(s)	67
XspI	CTAG	8 cut(s)	68, 98, 119, 284, 314, 503, 587, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.