pycom04g11530

Glycosyl transferase family 2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
14417843 .. 14418073
231 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g11530.1

Sequence Viewer

Length: 231 bp
ATGACGTCTCCTTCTTCACAAACTCCCCCCTCCACCGCCATATCCACTGTCTCCGTTCTCCTCCCCTCGTGGGAGATACTACTCATTGTCTCTCAAAAGACTCCATTTCCATCCGCTGGAGGCAACAACTATGTTTGTCTCTTCCAAAACAACGACACCTCTGATGCCAAGCTTTCCAAAACGTTGCCGTTTACGAACCAGACGACGCTGGCGTGCCCCATGCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.1

Weight (kDa)

5.87

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013319)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 2 cut(s) 36, 114
AclI AACGTT 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 70, 116
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 4 cut(s) 12, 55, 94, 143
BaeGI GKGCMC 1 cut(s) 218
BauI CACGAG 1 cut(s) 67
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 172
BcoDI GTCTC 4 cut(s) 12, 55, 94, 143
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 116
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 70, 116
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 70, 116
BsmAI GTCTC 4 cut(s) 12, 55, 94, 143
BsmBI CGTCTC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 218
BspACI CCGC 2 cut(s) 36, 114
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 210, 214
BstF5I GGATG 1 cut(s) 110
BstMAI GTCTC 4 cut(s) 12, 55, 94, 143
BstSLI GKGCMC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 210, 214
CseI GACGC 1 cut(s) 214
CviAII CATG 1 cut(s) 220
CviJI RGCY 1 cut(s) 172
CviKI_1 RGCY 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 1 cut(s) 223
FaiI YATR 3 cut(s) 41, 132, 221
FatI CATG 1 cut(s) 219
FokI GGATG 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 138
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 5, 182
HpySE526I ACGT 2 cut(s) 5, 182
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 223
LpnPI CCDG 3 cut(s) 102, 194, 212
LweI GCATC 1 cut(s) 154
MaeII ACGT 2 cut(s) 5, 182
MboII GAAGA 2 cut(s) 6, 133
MfeI CAATTG 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 5 cut(s) 40, 71, 76, 113, 169
MspA1I CMGCKG 1 cut(s) 116
MunI CAATTG 1 cut(s) 226
NlaIII CATG 1 cut(s) 223
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 209
PflMI CCANNNNNTGG 1 cut(s) 116
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp1406I AACGTT 1 cut(s) 182
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 218
SetI ASST 4 cut(s) 8, 161, 174, 185
SfaNI GCATC 1 cut(s) 154
SgeI CNNG 7 cut(s) 79, 81, 129, 181, 211, 221, 225
Sse9I AATT 1 cut(s) 226
SsiI CCGC 2 cut(s) 36, 114
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 2 cut(s) 8, 185
TasI AATT 1 cut(s) 226
TscAI CASTG 1 cut(s) 52
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 116
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.