Rmu_sc0021889.1_g000001

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021889.1
OG0013319
Physical Location & Seq
Forward (+)
654 .. 1263
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021889.1_g000001.1.cds

Sequence Viewer

Length: 610 bp
atgacgacccaaaataagccccactctttcccaccactcctctcccttcaaaccctcaccgccatgcgccgctcgctctccgctgcgcttttgttcgccatcgccggcctcttcctcttcgcctccttctccctccacttctcccgctcctccgtctcccgctccgacctcatccaccgctaccccatccccagcccctccgccgaccaccacctcctccgcgacgacgaccactctccgcctctcagccatgtctcctccgtctccaccgtcgcagtgcttctacctgcctggaaggtcctcatccttgtttcgccggagactccgctctcggagaaggaccgttacgtctgcgtgttccagaacaaccgcacctctcgcgctagattcgccgggattctgccgtcgaggaaccggacggcgttttattgcgcgatgccgaacagagtcaggcgactccggccgtttctccagccggtgctgtcgaggaagtcgcagatcatcaacaacgactcgacgacgcgtacggcgccggagatgatccggtggactttccttgtctacgagtcgttctccaccgaagacgacgtcgttctgttcgcgaaaggcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

203

Amino Acids

22.96

Weight (kDa)

10.43

Isoelectric Point (pI)

66.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37420
fragaria_vesca FvH4_5g25330
malus_domestica MD06G1009800.v1.1
prunus_persica Prupe.5G010400_v2.0.a1
pyrus_communis pycom04g11530 pycom06g00810 pycom09g12170
rosa_chinensis RchiOBHm_Chr7g0215561
rosa_laevigata RLG00000002648
rosa_multiflora Rmu_co8335425.1_g000001 Rmu_sc0000898.1_g000091 Rmu_sc0021889.1_g000001
rosa_roxburghii Rroxscaffold_3G00244110
rosa_samantha Rh7AG291000 Rh7BG283100 Rh7CG311000 Rh7DG294600
rosa_wichuraiana Rw7G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AatII GACGTC 1 cut(s) 591
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 529
AccBSI CCGCTC 4 cut(s) 72, 147, 162, 328
AccI GTMKAC 1 cut(s) 561
AccII CGCG 5 cut(s) 222, 381, 434, 523, 602
AclWI GGATC 1 cut(s) 535
AcoI YGGCCR 1 cut(s) 461
AcyI GRCGYC 2 cut(s) 530, 588
AfaI GTAC 1 cut(s) 526
AflIII ACRYGT 1 cut(s) 521
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 290
Alw26I GTCTC 4 cut(s) 160, 259, 268, 314
AlwI GGATC 1 cut(s) 535
AoxI GGCC 2 cut(s) 106, 461
ApeKI GCWGC 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 573, 605
AspLEI GCGC 5 cut(s) 69, 88, 383, 434, 532
AspS9I GGNCC 2 cut(s) 298, 340
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 298, 340
BanI GGYRCC 1 cut(s) 529
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 107, 194
BceAI ACGGC 4 cut(s) 388, 435, 448, 543
BciT130I CCWGG 1 cut(s) 292
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 4 cut(s) 160, 259, 268, 314
BfaI CTAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 70, 84
BlsI GCNGC 2 cut(s) 71, 85
Bme1390I CCNGG 2 cut(s) 292, 394
Bme18I GGWCC 2 cut(s) 298, 340
BmgT120I GGNCC 2 cut(s) 298, 340
BmiI GGNNCC 2 cut(s) 413, 531
BmrFI CCNGG 2 cut(s) 292, 394
BmsI GCATC 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 588
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 394
BsaHI GRCGYC 2 cut(s) 530, 588
BsaWI WCCGGW 2 cut(s) 414, 543
Bse118I RCCGGY 2 cut(s) 104, 475
BseBI CCWGG 1 cut(s) 292
BseGI GGATG 3 cut(s) 171, 186, 303
BseMII CTCAG 1 cut(s) 259
BseRI GAGGAG 4 cut(s) 29, 139, 206, 247
BseX3I CGGCCG 1 cut(s) 461
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 5 cut(s) 222, 381, 434, 523, 602
Bsh1285I CGRYCG 1 cut(s) 464
BshFI GGCC 3 cut(s) 108, 463, 609
BshNI GGYRCC 1 cut(s) 529
BsiEI CGRYCG 1 cut(s) 464
BsiSI CCGG 8 cut(s) 105, 317, 393, 415, 460, 476, 533, 544
BsiWI CGTACG 1 cut(s) 524
BsmAI GTCTC 4 cut(s) 160, 259, 268, 314
BsmBI CGTCTC 2 cut(s) 160, 268
BsnI GGCC 3 cut(s) 108, 463, 609
Bsp143I GATC 2 cut(s) 498, 540
Bsp68I TCGCGA 1 cut(s) 602
BspANI GGCC 3 cut(s) 108, 463, 609
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 5 cut(s) 222, 381, 434, 523, 602
BspLI GGNNCC 2 cut(s) 413, 531
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 529
BsrBI CCGCTC 4 cut(s) 72, 147, 162, 328
BsrFI RCCGGY 2 cut(s) 104, 475
BssAI RCCGGY 2 cut(s) 104, 475
BssMI GATC 2 cut(s) 498, 540
BssNI GRCGYC 2 cut(s) 530, 588
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 271, 344
Bst6I CTCTTC 2 cut(s) 116, 122
BstACI GRCGYC 2 cut(s) 530, 588
BstC8I GCNNGC 2 cut(s) 74, 106
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 171, 186, 303
BstFNI CGCG 5 cut(s) 222, 381, 434, 523, 602
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 5 cut(s) 69, 88, 383, 434, 532
BstKTI GATC 2 cut(s) 501, 543
BstMAI GTCTC 4 cut(s) 160, 259, 268, 314
BstMBI GATC 2 cut(s) 498, 540
BstMCI CGRYCG 1 cut(s) 464
BstMWI GCNNNNNNNGC 5 cut(s) 73, 378, 389, 460, 529
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 290, 392
BstUI CGCG 5 cut(s) 222, 381, 434, 523, 602
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 588
BstZI CGGCCG 1 cut(s) 461
BsuRI GGCC 3 cut(s) 108, 463, 609
BtgZI GCGATG 2 cut(s) 85, 449
BtsCI GGATG 3 cut(s) 171, 186, 303
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
BtuMI TCGCGA 1 cut(s) 602
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 74, 106
CfoI GCGC 5 cut(s) 69, 88, 383, 434, 532
Cfr10I RCCGGY 2 cut(s) 104, 475
Cfr13I GGNCC 2 cut(s) 298, 340
CseI GACGC 1 cut(s) 529
Csp6I GTAC 1 cut(s) 525
CviAII CATG 2 cut(s) 64, 251
CviJI RGCY 7 cut(s) 19, 108, 195, 249, 463, 475, 609
CviKI_1 RGCY 7 cut(s) 19, 108, 195, 249, 463, 475, 609
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 1 cut(s) 245
DinI GGCGCC 1 cut(s) 531
DpnI GATC 2 cut(s) 500, 542
DpnII GATC 2 cut(s) 498, 540
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 461
EagI CGGCCG 1 cut(s) 461
Eam1104I CTCTTC 2 cut(s) 116, 122
EarI CTCTTC 2 cut(s) 116, 122
EciI GGCGGA 2 cut(s) 190, 228
EclXI CGGCCG 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 298, 340
Eco52I CGGCCG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 290
EgeI GGCGCC 1 cut(s) 531
EheI GGCGCC 1 cut(s) 531
Esp3I CGTCTC 2 cut(s) 160, 268
FaeI CATG 2 cut(s) 67, 254
FaiI YATR 2 cut(s) 65, 252
FatI CATG 2 cut(s) 63, 250
FauI CCCGC 2 cut(s) 152, 167
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 70, 84
FokI GGATG 3 cut(s) 158, 173, 290
Fsp4HI GCNGC 2 cut(s) 70, 84
FspBI CTAG 1 cut(s) 384
GlaI GCGC 5 cut(s) 68, 87, 382, 433, 531
GluI GCNGC 2 cut(s) 70, 84
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 3 cut(s) 108, 463, 609
HapII CCGG 8 cut(s) 105, 317, 393, 415, 460, 476, 533, 544
HgaI GACGC 1 cut(s) 529
HhaI GCGC 5 cut(s) 69, 88, 383, 434, 532
Hin1I GRCGYC 2 cut(s) 530, 588
Hin1II CATG 2 cut(s) 67, 254
Hin6I GCGC 5 cut(s) 67, 86, 381, 432, 530
HinP1I GCGC 5 cut(s) 67, 86, 381, 432, 530
HinfI GANTC 7 cut(s) 322, 387, 397, 447, 456, 512, 566
HpaII CCGG 8 cut(s) 105, 317, 393, 415, 460, 476, 533, 544
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 549, 562
Hpy188I TCNGA 2 cut(s) 166, 334
Hpy188III TCNNGA 2 cut(s) 361, 601
Hpy8I GTNNAC 2 cut(s) 549, 562
Hpy99I CGWCG 8 cut(s) 227, 230, 275, 409, 520, 523, 590, 593
HpyAV CCTTC 4 cut(s) 56, 136, 289, 331
HpyCH4III ACNGT 2 cut(s) 271, 344
HpyCH4IV ACGT 2 cut(s) 348, 588
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 378, 389, 460, 529
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 348, 588
Hsp92I GRCGYC 2 cut(s) 530, 588
Hsp92II CATG 2 cut(s) 67, 254
HspAI GCGC 5 cut(s) 67, 86, 381, 432, 530
KasI GGCGCC 1 cut(s) 529
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 498, 540
LmnI GCTCC 2 cut(s) 152, 167
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 426
MaeI CTAG 1 cut(s) 384
MaeII ACGT 2 cut(s) 348, 588
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 500, 542
MbiI CCGCTC 4 cut(s) 72, 147, 162, 328
MboI GATC 2 cut(s) 498, 540
MboII GAAGA 3 cut(s) 103, 109, 593
MluI ACGCGT 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 530
MlyI GAGTC 5 cut(s) 316, 450, 456, 506, 575
MmeI TCCRAC 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 8 cut(s) 105, 317, 393, 415, 460, 476, 533, 544
MspR9I CCNGG 2 cut(s) 292, 394
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 5 cut(s) 222, 381, 434, 523, 602
MwoI GCNNNNNNNGC 5 cut(s) 73, 378, 389, 460, 529
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 1 cut(s) 530
NciI CCSGG 1 cut(s) 394
NdeII GATC 2 cut(s) 498, 540
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 67, 254
NlaIV GGNNCC 2 cut(s) 413, 531
NruI TCGCGA 1 cut(s) 602
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 387, 397
Pfl23II CGTACG 1 cut(s) 524
PflFI GACNNNGTC 1 cut(s) 587
PkrI GCNGC 2 cut(s) 71, 85
PleI GAGTC 5 cut(s) 316, 450, 455, 506, 574
PluTI GGCGCC 1 cut(s) 533
PpsI GAGTC 5 cut(s) 316, 450, 455, 506, 574
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 290
PspLI CGTACG 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 413, 531
PspPI GGNCC 2 cut(s) 298, 340
PspPPI RGGWCCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 587
RruI TCGCGA 1 cut(s) 602
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 1 cut(s) 62
SatI GCNGC 2 cut(s) 70, 84
Sau3AI GATC 2 cut(s) 498, 540
Sau96I GGNCC 2 cut(s) 298, 340
SchI GAGTC 5 cut(s) 316, 450, 456, 506, 575
ScrFI CCNGG 2 cut(s) 292, 394
SetI ASST 7 cut(s) 171, 216, 289, 300, 351, 377, 591
SfaNI GCATC 1 cut(s) 426
SfoI GGCGCC 1 cut(s) 531
SinI GGWCC 2 cut(s) 298, 340
SmiMI CAYNNNNRTG 1 cut(s) 62
SspDI GGCGCC 1 cut(s) 529
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 290, 392
TaaI ACNGT 2 cut(s) 271, 344
TaiI ACGT 2 cut(s) 351, 591
TaqI TCGA 3 cut(s) 407, 485, 515
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 2 cut(s) 387, 397
TscAI CASTG 1 cut(s) 282
TseI GCWGC 1 cut(s) 83
TspGWI ACGGA 2 cut(s) 142, 250
TspRI CASTG 1 cut(s) 282
Tth111I GACNNNGTC 1 cut(s) 587
VpaK11BI GGWCC 2 cut(s) 298, 340
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 1 cut(s) 384
ZraI GACGTC 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.