Rmu_co8335425.1_g000001

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8335425.1
OG0013319
Physical Location & Seq
Forward (+)
1 .. 610
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8335425.1_g000001.1.cds

Sequence Viewer

Length: 610 bp
cgccaagtcgttgtgcaactggatgatgtacattgacgtcgacgagttcgtcttcgcgccaaattcttggagcgagtctccggcgccggggaggcacatgctcaggtctctgatacctaaggacccgagtatcggacaagtttcgatccactgcaacgagtttggcccctcgaaccagaaaacgcacccattggaaggtgtcacgcaggggtacacatgtcggaggcggttcgagcagcggcacaagtcgattgtgctgctggaggcggttgagcactcgctgctcaacgtgatacaccattttgatataaagaaagagttcagaacaaagcaactgagcagtgaggatgctatagtgaaccattataagtaccaagcttggcccgagtttcagaccaagttccggagaagggtgtcggcttacgtggtggattggactgaggggcttaatccgatgtccaaggataggactccggggctaggttttcagccggtggagccgaaagggtggccggaaatgttttgtgaggttagggatgagaggttgaagatggtgacgcagaaatggtttgggtctcctgctagtagtaaaatggtgtggcaaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

202

Amino Acids

23.57

Weight (kDa)

8.88

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37420
fragaria_vesca FvH4_5g25330
malus_domestica MD06G1009800.v1.1
prunus_persica Prupe.5G010400_v2.0.a1
pyrus_communis pycom04g11530 pycom06g00810 pycom09g12170
rosa_chinensis RchiOBHm_Chr7g0215561
rosa_laevigata RLG00000002648
rosa_multiflora Rmu_co8335425.1_g000001 Rmu_sc0000898.1_g000091 Rmu_sc0021889.1_g000001
rosa_roxburghii Rroxscaffold_3G00244110
rosa_samantha Rh7AG291000 Rh7BG283100 Rh7CG311000 Rh7DG294600
rosa_wichuraiana Rw7G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 367
AasI GACNNNNNNGTC 1 cut(s) 48
AatII GACGTC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 40
AccII CGCG 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 3 cut(s) 227, 239, 267
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 1 cut(s) 62
AcyI GRCGYC 2 cut(s) 37, 84
AfaI GTAC 3 cut(s) 30, 213, 372
AfiI CCNNNNNNNGG 7 cut(s) 87, 132, 195, 403, 410, 466, 480
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 548
AluBI AGCT 1 cut(s) 378
AluI AGCT 1 cut(s) 378
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 3 cut(s) 82, 112, 580
AlwI GGATC 1 cut(s) 140
Ama87I CYCGRG 2 cut(s) 125, 384
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 3 cut(s) 164, 381, 510
ApeKI GCWGC 3 cut(s) 236, 257, 281
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 318
AspLEI GCGC 2 cut(s) 59, 86
AspS9I GGNCC 3 cut(s) 122, 165, 382
AsuC2I CCSGG 2 cut(s) 88, 475
AsuHPI GGTGA 1 cut(s) 566
AvaI CYCGRG 2 cut(s) 125, 384
AvaII GGWCC 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 118
BaeI ACNNNNGTAYC 4 cut(s) 113, 146, 203, 236
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 244, 248, 268
BccI CCATC 1 cut(s) 545
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BcnI CCSGG 2 cut(s) 88, 475
BcoDI GTCTC 3 cut(s) 82, 112, 580
BfaI CTAG 2 cut(s) 480, 583
BfmI CTRYAG 1 cut(s) 352
BfoI RGCGCY 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 4 cut(s) 237, 240, 258, 282
BlsI GCNGC 4 cut(s) 238, 241, 259, 283
Bme1390I CCNGG 2 cut(s) 88, 475
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 2 cut(s) 125, 384
BmgT120I GGNCC 3 cut(s) 122, 165, 382
BmiI GGNNCC 4 cut(s) 85, 124, 167, 499
BmrFI CCNGG 2 cut(s) 88, 475
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 102
BpuMI CCSGG 2 cut(s) 88, 475
BsaAI YACGTR 1 cut(s) 425
BsaHI GRCGYC 2 cut(s) 37, 84
BsaI GGTCTC 2 cut(s) 112, 580
BsaJI CCNNGG 3 cut(s) 87, 460, 474
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 7 cut(s) 87, 132, 195, 403, 410, 466, 480
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 24
Bse21I CCTNAGG 1 cut(s) 118
BseAI TCCGGA 1 cut(s) 403
BseDI CCNNGG 3 cut(s) 87, 460, 474
BseGI GGATG 3 cut(s) 28, 353, 542
BseLI CCNNNNNNNGG 7 cut(s) 87, 132, 195, 403, 410, 466, 480
BseMII CTCAG 3 cut(s) 116, 327, 430
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 3 cut(s) 244, 248, 268
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 166, 383, 512
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 2 cut(s) 125, 384
BsiSI CCGG 6 cut(s) 81, 87, 404, 474, 492, 513
BslI CCNNNNNNNGG 7 cut(s) 87, 132, 195, 403, 410, 466, 480
BsmAI GTCTC 3 cut(s) 82, 112, 580
BsnI GGCC 3 cut(s) 166, 383, 512
Bso31I GGTCTC 2 cut(s) 112, 580
BsoBI CYCGRG 2 cut(s) 125, 384
Bsp1286I GDGCHC 1 cut(s) 277
Bsp13I TCCGGA 1 cut(s) 403
Bsp1407I TGTACA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 3 cut(s) 227, 239, 267
BspANI GGCC 3 cut(s) 166, 383, 512
BspCNI CTCAG 3 cut(s) 115, 328, 431
BspEI TCCGGA 1 cut(s) 403
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 4 cut(s) 85, 124, 167, 499
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 2 cut(s) 112, 580
BsrFI RCCGGY 1 cut(s) 491
BsrGI TGTACA 1 cut(s) 28
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 3 cut(s) 87, 460, 474
BssMI GATC 1 cut(s) 145
BssNI GRCGYC 2 cut(s) 37, 84
BssT1I CCWWGG 1 cut(s) 460
BstACI GRCGYC 2 cut(s) 37, 84
BstAPI GCANNNNNTGC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 425
BstDEI CTNAG 4 cut(s) 102, 118, 336, 439
BstF5I GGATG 3 cut(s) 28, 353, 542
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 2 cut(s) 59, 86
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 3 cut(s) 82, 112, 580
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 4 cut(s) 92, 233, 281, 497
BstNSI RCATGY 2 cut(s) 101, 220
BstSCI CCNGG 2 cut(s) 86, 473
BstSFI CTRYAG 1 cut(s) 352
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 244, 248, 268
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 67
Bsu36I CCTNAGG 1 cut(s) 118
BsuRI GGCC 3 cut(s) 166, 383, 512
BtsCI GGATG 3 cut(s) 28, 353, 542
BtsI GCAGTG 2 cut(s) 149, 347
BtsIMutI CAGTG 2 cut(s) 149, 347
CfoI GCGC 2 cut(s) 59, 86
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 3 cut(s) 122, 165, 382
CseI GACGC 1 cut(s) 566
Csp6I GTAC 3 cut(s) 29, 212, 371
CviAII CATG 2 cut(s) 98, 217
CviJI RGCY 9 cut(s) 166, 378, 383, 420, 446, 479, 491, 500, 512
CviKI_1 RGCY 9 cut(s) 166, 378, 383, 420, 446, 479, 491, 500, 512
CviQI GTAC 3 cut(s) 29, 212, 371
DdeI CTNAG 4 cut(s) 102, 118, 336, 439
DinI GGCGCC 1 cut(s) 85
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DrdI GACNNNNNNGTC 1 cut(s) 48
DseDI GACNNNNNNGTC 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 460
Eco31I GGTCTC 2 cut(s) 112, 580
Eco47I GGWCC 1 cut(s) 122
Eco81I CCTNAGG 1 cut(s) 118
Eco88I CYCGRG 2 cut(s) 125, 384
EcoO109I RGGNCCY 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 460
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 2 cut(s) 101, 220
FaiI YATR 5 cut(s) 99, 218, 309, 354, 367
FatI CATG 2 cut(s) 97, 216
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 4 cut(s) 237, 240, 258, 282
FokI GGATG 3 cut(s) 35, 360, 549
Fsp4HI GCNGC 4 cut(s) 237, 240, 258, 282
FspBI CTAG 2 cut(s) 480, 583
GlaI GCGC 2 cut(s) 58, 85
GluI GCNGC 4 cut(s) 237, 240, 258, 282
GsuI CTGGAG 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 3 cut(s) 166, 383, 512
HapII CCGG 6 cut(s) 81, 87, 404, 474, 492, 513
HgaI GACGC 1 cut(s) 566
HhaI GCGC 2 cut(s) 59, 86
Hin1I GRCGYC 2 cut(s) 37, 84
Hin1II CATG 2 cut(s) 101, 220
Hin6I GCGC 2 cut(s) 57, 84
HinP1I GCGC 2 cut(s) 57, 84
HincII GTYRAC 1 cut(s) 41
HindII GTYRAC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 2 cut(s) 75, 470
HpaII CCGG 6 cut(s) 81, 87, 404, 474, 492, 513
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 3 cut(s) 41, 214, 359
Hpy188I TCNGA 6 cut(s) 112, 135, 223, 324, 394, 454
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 3 cut(s) 41, 214, 359
Hpy99I CGWCG 2 cut(s) 42, 45
HpyAV CCTTC 2 cut(s) 189, 403
HpyCH4IV ACGT 3 cut(s) 37, 289, 424
HpyCH4V TGCA 2 cut(s) 16, 154
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 233, 281, 497
HpyF3I CTNAG 4 cut(s) 102, 118, 336, 439
HpySE526I ACGT 3 cut(s) 37, 289, 424
Hsp92I GRCGYC 2 cut(s) 37, 84
Hsp92II CATG 2 cut(s) 101, 220
HspAI GCGC 2 cut(s) 57, 84
KasI GGCGCC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 403
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 70, 497
Lsp1109I GCAGC 3 cut(s) 244, 248, 268
LweI GCATC 1 cut(s) 338
MaeI CTAG 2 cut(s) 480, 583
MaeII ACGT 3 cut(s) 37, 289, 424
MaeIII GTNAC 2 cut(s) 200, 554
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 44, 560
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 1 cut(s) 62
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 2 cut(s) 84, 464
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 8 cut(s) 85, 179, 217, 257, 338, 434, 521, 535
MroI TCCGGA 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 1 cut(s) 448
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 6 cut(s) 81, 87, 404, 474, 492, 513
MspR9I CCNGG 2 cut(s) 88, 475
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 4 cut(s) 92, 233, 281, 497
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 2 cut(s) 88, 475
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 101, 220
NlaIV GGNNCC 4 cut(s) 85, 124, 167, 499
NmuCI GTSAC 2 cut(s) 200, 554
NspI RCATGY 2 cut(s) 101, 220
PciI ACATGT 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 318
PkrI GCNGC 4 cut(s) 238, 241, 259, 283
PleI GAGTC 2 cut(s) 83, 464
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 2 cut(s) 83, 464
Ppu21I YACGTR 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 122
PscI ACATGT 1 cut(s) 216
PsiI TTATAA 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 122
PspN4I GGNNCC 4 cut(s) 85, 124, 167, 499
PspPI GGNCC 3 cut(s) 122, 165, 382
PspPPI RGGWCCY 1 cut(s) 122
RsaI GTAC 3 cut(s) 30, 213, 372
RsaNI GTAC 3 cut(s) 29, 212, 371
SalI GTCGAC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 448
SatI GCNGC 4 cut(s) 237, 240, 258, 282
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 3 cut(s) 122, 165, 382
SchI GAGTC 2 cut(s) 84, 464
ScrFI CCNGG 2 cut(s) 88, 475
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 1 cut(s) 352
SfoI GGCGCC 1 cut(s) 85
SgrDI CGTCGACG 1 cut(s) 39
SinI GGWCC 1 cut(s) 122
Sse9I AATT 1 cut(s) 62
SsiI CCGC 3 cut(s) 227, 239, 267
SspDI GGCGCC 1 cut(s) 83
SspMI CTAG 2 cut(s) 480, 583
StyD4I CCNGG 2 cut(s) 86, 473
StyI CCWWGG 1 cut(s) 460
TaiI ACGT 3 cut(s) 40, 292, 427
TaqI TCGA 5 cut(s) 40, 144, 171, 232, 249
TasI AATT 1 cut(s) 62
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 448
Tru9I TTAA 1 cut(s) 448
TscAI CASTG 2 cut(s) 156, 347
TseFI GTSAC 2 cut(s) 200, 554
TseI GCWGC 3 cut(s) 236, 257, 281
Tsp45I GTSAC 2 cut(s) 200, 554
TspRI CASTG 2 cut(s) 156, 347
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 62
XceI RCATGY 2 cut(s) 101, 220
XmiI GTMKAC 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 2 cut(s) 480, 583
ZraI GACGTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.