pycom09g12170

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013319
Physical Location & Seq
Forward (+)
10607649 .. 10608369
721 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12170.2

Sequence Viewer

Length: 660 bp
ATGTGCCACACTCCTTGCTTTCCTCCTCTTCACCTCCACCACTTCCCCATCACCCTCGATGACGACCGCCGCCACTCCATCCTCGCAATCCGCGATCAGCCTCTTCCTACCCCTTATCGCACTTGCCACAACGTTTCCTCCCTCACGAACTCCTTCTCCACCGCCATATCCACTGTCTTCGTTCTCCTCCCTTCGTGGGAGATACTACTCATGGTCTCACTTGAGACTTCACTTCCAACCGCCGGAGGCAACAACTATGTTTGTCTCTTCCAAAACAATGACACCTTTGACGCCAGGCTATCCAAAACGTTACCGTTTACGAACCGGACGACACTGGCATGCCCCATGCCTAATCGAGTGAAGCGTCTCTGCCCGTTTCACCAACCTATGTTGGCAAAGAGCTCCAACAAAGACACGCTGGCGTCGGGTTTGAATTCTCCGGAGCTAATGGTCCGGTGGAACTTCATGGTCTATGAGTCGTTCTCGACCAATTGCCAATGGTCGCTCGACATTCTGGACGTCTGGGCGTCGATGGGTCTGAAGGGGAAGATGGACAAGGTAGGGTTAAGGTTTTGTGGGAATTTGGGGGGTTTTTTGTTTGAAATTGGTTTGGAGATGAAGAAGAGAGAGGATTGTGGGGGTGTTTGGTTACAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

220

Amino Acids

24.76

Weight (kDa)

8.09

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37420
fragaria_vesca FvH4_5g25330
malus_domestica MD06G1009800.v1.1
prunus_persica Prupe.5G010400_v2.0.a1
pyrus_communis pycom04g11530 pycom06g00810 pycom09g12170
rosa_chinensis RchiOBHm_Chr7g0215561
rosa_laevigata RLG00000002648
rosa_multiflora Rmu_co8335425.1_g000001 Rmu_sc0000898.1_g000091 Rmu_sc0021889.1_g000001
rosa_roxburghii Rroxscaffold_3G00244110
rosa_samantha Rh7AG291000 Rh7BG283100 Rh7CG311000 Rh7DG294600
rosa_wichuraiana Rw7G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 522
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 5 cut(s) 67, 70, 91, 162, 240
AclI AACGTT 2 cut(s) 132, 308
AcsI RAATTY 2 cut(s) 433, 580
AcuI CTGAAG 1 cut(s) 560
AcyI GRCGYC 4 cut(s) 291, 422, 519, 527
AfiI CCNNNNNNNGG 2 cut(s) 196, 242
AgsI TTSAA 2 cut(s) 433, 602
AjnI CCWGG 1 cut(s) 293
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 402, 445
AluI AGCT 2 cut(s) 402, 445
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 4 cut(s) 218, 220, 269, 371
Aor13HI TCCGGA 1 cut(s) 439
ApoI RAATTY 2 cut(s) 433, 580
Asp700I GAANNNNTTC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 3 cut(s) 23, 43, 371
AvaII GGWCC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 404
BccI CCATC 4 cut(s) 56, 86, 526, 544
BciT130I CCWGG 1 cut(s) 295
BcoDI GTCTC 4 cut(s) 218, 220, 269, 371
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpuEI CTTGAG 1 cut(s) 242
BsaHI GRCGYC 4 cut(s) 291, 422, 519, 527
BsaI GGTCTC 1 cut(s) 220
BsaWI WCCGGW 3 cut(s) 324, 439, 453
BsaXI ACNNNNNCTCC 4 cut(s) 122, 140, 152, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 242
Bse1I ACTGG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 196, 242
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 2 cut(s) 15, 176
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 404
BsiSI CCGG 4 cut(s) 243, 325, 440, 454
BslI CCNNNNNNNGG 2 cut(s) 196, 242
BsmAI GTCTC 4 cut(s) 218, 220, 269, 371
BsmBI CGTCTC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 404
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 5 cut(s) 67, 70, 91, 162, 240
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 339
BssMI GATC 1 cut(s) 94
BssNI GRCGYC 4 cut(s) 291, 422, 519, 527
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 175, 315
Bst6I CTCTTC 4 cut(s) 33, 108, 272, 617
BstACI GRCGYC 4 cut(s) 291, 422, 519, 527
BstC8I GCNNGC 2 cut(s) 340, 420
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 4 cut(s) 218, 220, 269, 371
BstMBI GATC 1 cut(s) 94
BstMCI CGRYCG 1 cut(s) 67
BstNI CCWGG 1 cut(s) 295
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 293
BstUI CGCG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 171, 332
Cac8I GCNNGC 2 cut(s) 340, 420
Cfr13I GGNCC 1 cut(s) 451
CseI GACGC 4 cut(s) 299, 353, 411, 516
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 4 cut(s) 211, 339, 346, 466
CviJI RGCY 4 cut(s) 100, 298, 402, 445
CviKI_1 RGCY 4 cut(s) 100, 298, 402, 445
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 4 cut(s) 33, 108, 272, 617
EarI CTCTTC 4 cut(s) 33, 108, 272, 617
Ecl136II GAGCTC 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 451
Eco53kI GAGCTC 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 404
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 4 cut(s) 214, 342, 349, 469
FaiI YATR 8 cut(s) 167, 212, 258, 340, 347, 389, 467, 474
FatI CATG 4 cut(s) 210, 338, 345, 465
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
HapII CCGG 4 cut(s) 243, 325, 440, 454
HgaI GACGC 4 cut(s) 299, 353, 411, 516
Hin1I GRCGYC 4 cut(s) 291, 422, 519, 527
Hin1II CATG 4 cut(s) 214, 342, 349, 469
HinfI GANTC 1 cut(s) 476
HpaII CCGG 4 cut(s) 243, 325, 440, 454
HphI GGTGA 3 cut(s) 23, 43, 371
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 540
Hpy188III TCNNGA 4 cut(s) 145, 440, 484, 515
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 2 cut(s) 427, 532
HpyAV CCTTC 3 cut(s) 163, 201, 535
HpyCH4III ACNGT 2 cut(s) 175, 315
HpyCH4IV ACGT 3 cut(s) 132, 308, 519
HpySE526I ACGT 3 cut(s) 132, 308, 519
Hsp92I GRCGYC 4 cut(s) 291, 422, 519, 527
Hsp92II CATG 4 cut(s) 214, 342, 349, 469
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 407, 442
MaeII ACGT 3 cut(s) 132, 308, 519
MaeIII GTNAC 2 cut(s) 309, 648
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 7 cut(s) 20, 95, 169, 259, 559, 631, 634
MfeI CAATTG 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 4 cut(s) 433, 490, 580, 603
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 260, 429
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 2 cut(s) 566, 658
MslI CAYNNNNRTG 1 cut(s) 337
MspI CCGG 4 cut(s) 243, 325, 440, 454
MspR9I CCNGG 1 cut(s) 295
MunI CAATTG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 295
MvnI CGCG 1 cut(s) 93
NdeII GATC 1 cut(s) 94
NlaIII CATG 4 cut(s) 214, 342, 349, 469
NspI RCATGY 1 cut(s) 342
PaeI GCATGC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 326, 361
PdmI GAANNNNTTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 404
Psp1406I AACGTT 2 cut(s) 132, 308
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspPI GGNCC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 337
SacI GAGCTC 1 cut(s) 404
SaqAI TTAA 2 cut(s) 566, 658
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 404
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SphI GCATGC 1 cut(s) 342
Sse9I AATT 4 cut(s) 433, 490, 580, 603
SsiI CCGC 5 cut(s) 67, 70, 91, 162, 240
SstI GAGCTC 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 175, 315
TaiI ACGT 3 cut(s) 135, 311, 522
TaqI TCGA 5 cut(s) 57, 355, 485, 507, 530
TasI AATT 4 cut(s) 433, 490, 580, 603
TauI GCSGC 1 cut(s) 72
Tru1I TTAA 2 cut(s) 566, 658
Tru9I TTAA 2 cut(s) 566, 658
TscAI CASTG 2 cut(s) 178, 339
TspDTI ATGAA 2 cut(s) 454, 632
TspRI CASTG 2 cut(s) 178, 339
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 2 cut(s) 433, 580
XceI RCATGY 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 152
ZraI GACGTC 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.