Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009899

Physical Location & Seq

Genomic Coordinates Forward (+)

17166417 .. 17169587

Gene Structure 3171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTCGGACGATGAGAGAGAGGAGAAGGAGCTGGATCTCACATCTCCAGAAGTCGTCACCAAATACAAGAGCGCCGCTGAAATTGTTAACAAGGCTTTGCAGCTGGTAATATCCGAATGCAAACCGAAGGCGAAGATTGTGGAACTTTGTGAGAAAGGAGATTCATACATCAGAGAGCAAACTGGTAACATGTACAAAAATGTGAAGAAGAAGATCGAGCGAGGCGTTGCCTTTCCGACTTGCATTTCTGTGAACAACACTGTTTGCCATTTCTCTCCTCTTGCCAGTGATGAGTCAGTGTTGGAAGAAGGCGATATTCTGAAGATTGATTTGGGCTGTCATATTGATGGGTTCATTGCCATAGTCGCGCATACTCATGTTCTTCAAGCAGGGCCAGTCACAGGAAGGGCAGCTGATGTTATTGCAGCTGCTAATACTGCTGCTGAAGTTGCATTAAGGCTTGTTAGGCCAGGGAGGAAGAACAAAGATGTAACAGAAGCAATACAAAAGGTTGCAGCAGCTTATGACTGCAAAATTGTTGAAGGTGTTCTTAGCCATCAGCTCAAGCAGTTTGTGATAGACGGGAACAAGGTCATATTAAGTGCTTCTACTCCAGAGACAAGAGTTGACGAGGCAGAATTTGAGGAGAATGAAGTTTATGCAGTTGATATAGTTGCAAGCACAGGTGAAGGCAAGCCTAAGCTGCTGGATGAGAAGCAGACTACTATCTACAAGAGAGCTGTTGACAAGAGCTACCACTTGAAGATGAAAGCCTCTAGGTTTATTTTCAGCGAAATAAGCCAGAAATTTCCCATCATGCCATTCACTGCTAGAGCTTTGGAAGAGAAAAGGGCAAGGCTGGGCTTACTTGAATGCGTCAACCACGAGCTTTTGCAGCCATATCCGGTCCTGCATGAGAAGCCTGGTGATTTTGTTGCTCATATCAAGTTCACCGTCTTGCTAATGCCAAATGGATCAGACCGGATCACATCTCATCCTGTACAGGAGCTGAAGCCCACTAAACAAGTAGATCGATCCCGAAATCAAAGCCTGGTTGTCTTTGGCCACAAAGAAGAAGAAAGGTGGTGGAAAGAAGAAGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006355 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0016020 GO:0019219 GO:0019222 GO:0019899 GO:0022402 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031625 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0040008 GO:0042221 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044843 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051302 GO:0051716 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

369

Amino Acids

41.25

Weight (kDa)

6.17

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	21 - 222	1.8e-21	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51800 AT3G51800 AT3G51800
fragaria_vesca	FvH4_6g11120 FvH4_6g11120 FvH4_6g11120
malus_domestica	MD00G1062200.v1.1 MD12G1172200.v1.1
prunus_persica	Prupe.6G280500_v2.0.a1 Prupe.6G280500_v2.0.a1
pyrus_communis	pycom04g14310 pycom12g16340
rosa_chinensis	RchiOBHm_Chr3g0462561
rosa_laevigata	RLG00000024848
rosa_roxburghii	Rroxscaffold_6G00417390
rosa_rugosa	Rorug03G0057600 Rorug03G0057600
rosa_samantha	Rh3AG115600 Rh3CG122500 Rh3DG121200
rosa_wichuraiana	Rw3G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	368
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	4 cut(s)	42, 982, 992, 1029
AcoI	YGGCCR	1 cut(s)	1063
AcsI	RAATTY	2 cut(s)	638, 806
AcuI	CTGAAG	3 cut(s)	341, 465, 1031
AfaI	GTAC	2 cut(s)	194, 1002
AfiI	CCNNNNNNNGG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	386, 542, 763, 872
AjnI	CCWGG	3 cut(s)	469, 922, 1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	4 cut(s)	42, 982, 992, 1029
AlwNI	CAGNNNCTG	1 cut(s)	1009
AoxI	GGCC	3 cut(s)	392, 467, 1063
ApeKI	GCWGC	9 cut(s)	100, 410, 425, 428, 440, 515, 518, 703, 895
ApoI	RAATTY	2 cut(s)	638, 806
Asp700I	GAANNNNTTC	1 cut(s)	546
AspLEI	GCGC	2 cut(s)	74, 370
AspS9I	GGNCC	2 cut(s)	392, 907
AsuHPI	GGTGA	4 cut(s)	49, 698, 938, 943
AvaII	GGWCC	1 cut(s)	907
BalI	TGGCCA	1 cut(s)	1065
BauI	CACGAG	1 cut(s)	884
BbvI	GCAGC	9 cut(s)	112, 415, 422, 427, 437, 527, 530, 690, 907
BccI	CCATC	3 cut(s)	341, 564, 821
BciT130I	CCWGG	3 cut(s)	471, 924, 1052
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	2 cut(s)	777, 831
BfoI	RGCGCY	1 cut(s)	75
Bme1390I	CCNGG	3 cut(s)	471, 924, 1052
Bme18I	GGWCC	1 cut(s)	907
BmgT120I	GGNCC	2 cut(s)	392, 907
BmrFI	CCNGG	3 cut(s)	471, 924, 1052
BpmI	CTGGAG	2 cut(s)	30, 597
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	1033
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	2 cut(s)	904, 981
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	3 cut(s)	187, 285, 395
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	471, 924, 1052
BseCI	ATCGAT	1 cut(s)	1033
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	2 cut(s)	715, 994
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	1 cut(s)	354
BseNI	ACTGG	3 cut(s)	187, 285, 395
BseRI	GAGGAG	3 cut(s)	35, 267, 659
BseXI	GCAGC	9 cut(s)	112, 415, 422, 427, 437, 527, 530, 690, 907
BseYI	CCCAGC	1 cut(s)	859
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	394, 469, 1065
BshVI	ATCGAT	1 cut(s)	1033
BsiSI	CCGG	2 cut(s)	905, 982
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	611
BsmI	GAATGC	2 cut(s)	122, 878
BsnI	GGCC	3 cut(s)	394, 469, 1065
Bsp1407I	TGTACA	2 cut(s)	192, 1000
Bsp143I	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	394, 469, 1065
BspDI	ATCGAT	1 cut(s)	1033
BspFNI	CGCG	1 cut(s)	368
BspPI	GGATC	4 cut(s)	42, 982, 992, 1029
BsrDI	GCAATG	1 cut(s)	354
BsrGI	TGTACA	2 cut(s)	192, 1000
BsrI	ACTGG	3 cut(s)	187, 285, 395
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
BssSI	CACGAG	1 cut(s)	884
Bst2BI	CACGAG	1 cut(s)	884
Bst2UI	CCWGG	3 cut(s)	471, 924, 1052
Bst4CI	ACNGT	2 cut(s)	262, 955
Bst6I	CTCTTC	1 cut(s)	837
BstAUI	TGTACA	2 cut(s)	192, 1000
BstC8I	GCNNGC	2 cut(s)	679, 695
BstDEI	CTNAG	2 cut(s)	551, 699
BstF5I	GGATG	2 cut(s)	715, 994
BstFNI	CGCG	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 370
BstKTI	GATC	6 cut(s)	37, 216, 977, 987, 1033, 1037
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
BstMWI	GCNNNNNNNGC	8 cut(s)	365, 437, 449, 466, 703, 798, 895, 919
BstNI	CCWGG	3 cut(s)	471, 924, 1052
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	469, 922, 1050
BstUI	CGCG	1 cut(s)	368
BstV1I	GCAGC	9 cut(s)	112, 415, 422, 427, 437, 527, 530, 690, 907
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	1033
BsuRI	GGCC	3 cut(s)	394, 469, 1065
BsuTUI	ATCGAT	1 cut(s)	1033
BtsCI	GGATG	2 cut(s)	715, 994
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	4 cut(s)	258, 292, 303, 825
Cac8I	GCNNGC	2 cut(s)	679, 695
CaiI	CAGNNNCTG	1 cut(s)	1009
CfoI	GCGC	2 cut(s)	74, 370
Cfr13I	GGNCC	2 cut(s)	392, 907
ClaI	ATCGAT	1 cut(s)	1033
CseI	GACGC	1 cut(s)	865
Csp6I	GTAC	2 cut(s)	193, 1001
CviAII	CATG	4 cut(s)	190, 377, 817, 914
CviQI	GTAC	2 cut(s)	193, 1001
DdeI	CTNAG	2 cut(s)	551, 699
DpnI	GATC	6 cut(s)	36, 215, 976, 986, 1032, 1036
DpnII	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
EaeI	YGGCCR	1 cut(s)	1063
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco47I	GGWCC	1 cut(s)	907
Eco57I	CTGAAG	3 cut(s)	341, 465, 1031
EcoRII	CCWGG	3 cut(s)	469, 922, 1050
FaeI	CATG	4 cut(s)	193, 380, 820, 917
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FatI	CATG	4 cut(s)	189, 376, 816, 913
FokI	GGATG	2 cut(s)	722, 981
FspBI	CTAG	2 cut(s)	777, 831
GlaI	GCGC	2 cut(s)	73, 369
GsaI	CCCAGC	1 cut(s)	863
GsuI	CTGGAG	2 cut(s)	30, 597
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	394, 469, 1065
HapII	CCGG	2 cut(s)	905, 982
HgaI	GACGC	1 cut(s)	865
HhaI	GCGC	2 cut(s)	74, 370
Hin1II	CATG	4 cut(s)	193, 380, 820, 917
Hin6I	GCGC	2 cut(s)	72, 368
HinP1I	GCGC	2 cut(s)	72, 368
HincII	GTYRAC	4 cut(s)	88, 628, 745, 880
HindII	GTYRAC	4 cut(s)	88, 628, 745, 880
HinfI	GANTC	2 cut(s)	161, 293
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	2 cut(s)	905, 982
HphI	GGTGA	4 cut(s)	49, 698, 938, 943
Hpy166II	GTNNAC	6 cut(s)	88, 253, 628, 745, 880, 951
Hpy188I	TCNGA	6 cut(s)	7, 115, 173, 237, 321, 979
Hpy188III	TCNNGA	3 cut(s)	47, 614, 1038
Hpy8I	GTNNAC	6 cut(s)	88, 253, 628, 745, 880, 951
HpyAV	CCTTC	6 cut(s)	19, 121, 302, 399, 536, 683
HpyCH4III	ACNGT	2 cut(s)	262, 955
HpyF10VI	GCNNNNNNNGC	8 cut(s)	365, 437, 449, 466, 703, 798, 895, 919
HpyF3I	CTNAG	2 cut(s)	551, 699
Hsp92II	CATG	4 cut(s)	193, 380, 820, 917
HspAI	GCGC	2 cut(s)	72, 368
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
LmnI	GCTCC	2 cut(s)	28, 1006
Lsp1109I	GCAGC	9 cut(s)	112, 415, 422, 427, 437, 527, 530, 690, 907
MaeI	CTAG	2 cut(s)	777, 831
MaeIII	GTNAC	4 cut(s)	55, 185, 397, 490
MalI	GATC	6 cut(s)	36, 215, 976, 986, 1032, 1036
MboI	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
MflI	RGATCY	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	1065
MluCI	AATT	4 cut(s)	81, 534, 638, 806
MluNI	TGGCCA	1 cut(s)	1065
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	260, 282
MnlI	CCTC	7 cut(s)	13, 215, 288, 468, 625, 637, 784
Mox20I	TGGCCA	1 cut(s)	1065
MroXI	GAANNNNTTC	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	1065
MseI	TTAA	3 cut(s)	87, 455, 599
MslI	CAYNNNNRTG	3 cut(s)	248, 345, 375
Msp20I	TGGCCA	1 cut(s)	1065
MspA1I	CMGCKG	4 cut(s)	77, 103, 413, 428
MspI	CCGG	2 cut(s)	905, 982
MspR9I	CCNGG	3 cut(s)	471, 924, 1052
Mva1269I	GAATGC	2 cut(s)	122, 878
MvaI	CCWGG	3 cut(s)	471, 924, 1052
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	8 cut(s)	365, 437, 449, 466, 703, 798, 895, 919
NdeII	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
NlaIII	CATG	4 cut(s)	193, 380, 820, 917
NmuCI	GTSAC	2 cut(s)	55, 397
NspI	RCATGY	1 cut(s)	193
PciI	ACATGT	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	122, 878
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	161
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PscI	ACATGT	1 cut(s)	189
Psp6I	CCWGG	3 cut(s)	469, 922, 1050
PspFI	CCCAGC	1 cut(s)	859
PspGI	CCWGG	3 cut(s)	469, 922, 1050
PspPI	GGNCC	2 cut(s)	392, 907
PstNI	CAGNNNCTG	1 cut(s)	1009
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	3 cut(s)	103, 413, 428
RsaI	GTAC	2 cut(s)	194, 1002
RsaNI	GTAC	2 cut(s)	193, 1001
RseI	CAYNNNNRTG	3 cut(s)	248, 345, 375
SaqAI	TTAA	3 cut(s)	87, 455, 599
Sau3AI	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
Sau96I	GGNCC	2 cut(s)	392, 907
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	471, 924, 1052
SinI	GGWCC	1 cut(s)	907
SmiMI	CAYNNNNRTG	3 cut(s)	248, 345, 375
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	4 cut(s)	81, 534, 638, 806
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	2 cut(s)	777, 831
StyD4I	CCNGG	3 cut(s)	469, 922, 1050
TaaI	ACNGT	2 cut(s)	262, 955
TaqI	TCGA	2 cut(s)	216, 1033
TasI	AATT	4 cut(s)	81, 534, 638, 806
TatI	WGTACW	2 cut(s)	192, 1000
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	87, 455, 599
Tru9I	TTAA	3 cut(s)	87, 455, 599
TscAI	CASTG	4 cut(s)	265, 292, 303, 832
TseFI	GTSAC	2 cut(s)	55, 397
TseI	GCWGC	9 cut(s)	100, 410, 425, 428, 440, 515, 518, 703, 895
Tsp45I	GTSAC	2 cut(s)	55, 397
TspDTI	ATGAA	4 cut(s)	153, 343, 666, 782
TspRI	CASTG	4 cut(s)	265, 292, 303, 832
VpaK11BI	GGWCC	1 cut(s)	907
XapI	RAATTY	2 cut(s)	638, 806
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	2 cut(s)	777, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.