Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006070

Physical Location & Seq

Genomic Coordinates Forward (+)

22706947 .. 22709132

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGTTCCTGCTTGTCTGCAGAAAGCAGGAGCCCTCTGCCCGATTCGCCGTCGTCTCCCTCCTGGGGAGTCCGGCGGCGGAAGAGCTCGAAGAAGAGAATGGGCTCGAGAAATTCTTCCTTTGATTACCGCCGGGAAGATCGGCTGCACAGAATTCCCGAGAGAATGTTCCTCAATGGGTCCAGTGAAGTTGCATCTTTGTTTACACAGCAGGGCAAGAAAGGAACCAATCAAGATGCCATGATTGTGTGGGAGAATTTCGGTTCGAGAACAGACACAGTTTTCTGTGGTGTTTTCGATGGGCACGGTCCATTTGGTCATATGGTTGCTAAAAGAGTGAGGGACTCTCTTCCTCTGAAATTGAGTGTAAACTGGGAAGTGAACGTAGTCAATGATGAAGTTCTCAAGGAGATTAGCCCCAACACTGCAGGAAGCTTGAATTCAGATGATACTGCTTTTTTATCTGTTGATGAAGATTTCAGGTCCTCCGTGGATGTTGACGAAACAGAAAAAAACCCTGAGTTCTTTCAGACACTGAGAGAGTCCTTTCTGAAGGCTTTTAAAGTTATGGACAGGGAGCTGCGAACAACACCAAGTATCGATTGCTTTTGTAGTGGGACAACAGCAGTAACTTTGATTAAACAGGGTCGGGATTTAATCATTGGAAATGTTGGGGACTCCCGAGCCGTTCTGTGCACGAGAAGAATAGATGACACTCTAAGTGCAATTCAGTTGACTGTGGATCTCAAACCAAATCTTCCAGCGGAAGCAGAGAGAATTCGTAAGTGTAGAGGGCGTGTTTTTGCTCTTCAGGATGAACCTGAGGTTGCTCGGGTCTGGCTGCCAAACACTGACTCTCCTGGACTTGCCATGGCACGCGCTTTTGGAGATTTCTGCCTCAAGGATTTCGGCCTGATCTCTGTACCAGATGTATCCTATCGGCGTCTCACAGAGAGGGATGAATTTATAGTCCTGGCTACAGATGGGGTACGTAGCCAGCTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

336

Amino Acids

37.51

Weight (kDa)

6.38

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02750 AT3G02750 AT3G02750 AT5G36250 AT5G36250 AT5G36250
fragaria_vesca	FvH4_6g00430 FvH4_6g00430 FvH4_6g00430 FvH4_6g00430 FvH4_6g00430
malus_domestica	MD04G1245600.v1.1 MD13G1061100.v1.1
prunus_persica	Prupe.6G362100_v2.0.a1
pyrus_communis	pycom04g21650 pycom12g23920
rosa_chinensis	RchiOBHm_Chr3g0447761
rosa_laevigata	RLG00000025973
rosa_multiflora	Rmu_ssc0000391.1_g000017
rosa_roxburghii	Rroxscaffold_6G00425960
rosa_rugosa	Rorug02G0605400 Rorug02G0605500
rosa_samantha	Rh3AG005100 Rh3BG004700 Rh3CG005100 Rh3DG005000
rosa_wichuraiana	Rw3G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	879
AciI	CCGC	4 cut(s)	76, 79, 130, 764
AclWI	GGATC	1 cut(s)	750
AcsI	RAATTY	6 cut(s)	112, 153, 256, 439, 777, 962
AcuI	CTGAAG	2 cut(s)	572, 794
AcyI	GRCGYC	1 cut(s)	943
AfaI	GTAC	2 cut(s)	924, 990
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	439
AjnI	CCWGG	3 cut(s)	62, 859, 972
AluBI	AGCT	4 cut(s)	87, 435, 580, 1000
AluI	AGCT	4 cut(s)	87, 435, 580, 1000
Alw21I	GWGCWC	2 cut(s)	89, 698
Alw26I	GTCTC	2 cut(s)	60, 950
Alw44I	GTGCAC	1 cut(s)	694
AlwI	GGATC	1 cut(s)	750
AlwNI	CAGNNNCTG	1 cut(s)	535
Ama87I	CYCGRG	4 cut(s)	106, 158, 681, 831
AoxI	GGCC	1 cut(s)	910
ApaLI	GTGCAC	1 cut(s)	694
ApeKI	GCWGC	3 cut(s)	145, 580, 841
ApoI	RAATTY	6 cut(s)	112, 153, 256, 439, 777, 962
Asp700I	GAANNNNTTC	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	881
AspS9I	GGNCC	3 cut(s)	180, 308, 483
AsuC2I	CCSGG	1 cut(s)	134
AvaI	CYCGRG	4 cut(s)	106, 158, 681, 831
AvaII	GGWCC	3 cut(s)	180, 308, 483
AxyI	CCTNAGG	1 cut(s)	822
BaeGI	GKGCMC	2 cut(s)	306, 698
BanII	GRGCYC	3 cut(s)	35, 89, 107
BauI	CACGAG	1 cut(s)	697
Bbv12I	GWGCWC	2 cut(s)	89, 698
BbvI	GCAGC	3 cut(s)	132, 567, 828
BccI	CCATC	2 cut(s)	293, 977
BceAI	ACGGC	2 cut(s)	34, 671
BciT130I	CCWGG	3 cut(s)	64, 861, 974
BciVI	GTATCC	1 cut(s)	943
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	60, 950
BfmI	CTRYAG	3 cut(s)	18, 426, 978
BfuI	GTATCC	1 cut(s)	943
BisI	GCNGC	4 cut(s)	77, 146, 581, 842
BlsI	GCNGC	4 cut(s)	78, 147, 582, 843
Bme1390I	CCNGG	4 cut(s)	64, 134, 861, 974
Bme18I	GGWCC	3 cut(s)	180, 308, 483
BmeT110I	CYCGRG	4 cut(s)	106, 158, 681, 831
BmgT120I	GGNCC	3 cut(s)	180, 308, 483
BmiI	GGNNCC	4 cut(s)	7, 32, 181, 226
BmrFI	CCNGG	4 cut(s)	64, 134, 861, 974
BmrI	ACTGGG	1 cut(s)	382
BmsI	GCATC	2 cut(s)	203, 226
BmuI	ACTGGG	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BpuEI	CTTGAG	2 cut(s)	389, 884
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	600
BsaAI	YACGTR	1 cut(s)	992
BsaHI	GRCGYC	1 cut(s)	943
BsaJI	CCNNGG	3 cut(s)	63, 489, 870
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	183, 377
Bse21I	CCTNAGG	1 cut(s)	822
BseBI	CCWGG	3 cut(s)	64, 861, 974
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	63, 489, 870
BseGI	GGATG	3 cut(s)	499, 820, 964
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	3 cut(s)	510, 527, 813
BseNI	ACTGG	2 cut(s)	183, 377
BseSI	GKGCMC	2 cut(s)	306, 698
BseXI	GCAGC	3 cut(s)	132, 567, 828
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	879
BshFI	GGCC	1 cut(s)	912
BshVI	ATCGAT	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	89, 698
BsiHKCI	CYCGRG	4 cut(s)	106, 158, 681, 831
BsiSI	CCGG	2 cut(s)	73, 133
BslFI	GGGAC	3 cut(s)	356, 631, 689
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	60, 950
BsmBI	CGTCTC	2 cut(s)	60, 950
BsmFI	GGGAC	3 cut(s)	356, 631, 689
BsnI	GGCC	1 cut(s)	912
BsoBI	CYCGRG	4 cut(s)	106, 158, 681, 831
Bsp1286I	GDGCHC	5 cut(s)	35, 89, 107, 306, 698
Bsp143I	GATC	3 cut(s)	139, 742, 915
Bsp19I	CCATGG	1 cut(s)	870
BspACI	CCGC	4 cut(s)	76, 79, 130, 764
BspANI	GGCC	1 cut(s)	912
BspCNI	CTCAG	3 cut(s)	511, 528, 814
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	879
BspLI	GGNNCC	4 cut(s)	7, 32, 181, 226
BspMAI	CTGCAG	2 cut(s)	22, 430
BspPI	GGATC	1 cut(s)	750
BspQI	GCTCTTC	2 cut(s)	77, 813
BsrI	ACTGG	2 cut(s)	183, 377
BssECI	CCNNGG	3 cut(s)	63, 489, 870
BssMI	GATC	3 cut(s)	139, 742, 915
BssNI	GRCGYC	1 cut(s)	943
BssSI	CACGAG	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	697
Bst2UI	CCWGG	3 cut(s)	64, 861, 974
Bst4CI	ACNGT	3 cut(s)	280, 308, 739
Bst6I	CTCTTC	4 cut(s)	77, 89, 354, 813
BstACI	GRCGYC	1 cut(s)	943
BstBAI	YACGTR	1 cut(s)	992
BstC8I	GCNNGC	2 cut(s)	877, 998
BstDEI	CTNAG	4 cut(s)	519, 536, 719, 822
BstDSI	CCRYGG	2 cut(s)	489, 870
BstF5I	GGATG	3 cut(s)	499, 820, 964
BstFNI	CGCG	1 cut(s)	879
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	3 cut(s)	142, 745, 918
BstMAI	GTCTC	2 cut(s)	60, 950
BstMBI	GATC	3 cut(s)	139, 742, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	3 cut(s)	64, 861, 974
BstSCI	CCNGG	4 cut(s)	62, 132, 859, 972
BstSFI	CTRYAG	3 cut(s)	18, 426, 978
BstSLI	GKGCMC	2 cut(s)	306, 698
BstSNI	TACGTA	1 cut(s)	992
BstUI	CGCG	1 cut(s)	879
BstV1I	GCAGC	3 cut(s)	132, 567, 828
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
Bsu15I	ATCGAT	1 cut(s)	600
Bsu36I	CCTNAGG	1 cut(s)	822
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	1 cut(s)	912
BsuTUI	ATCGAT	1 cut(s)	600
BtgI	CCRYGG	2 cut(s)	489, 870
BtsCI	GGATG	3 cut(s)	499, 820, 964
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	4 cut(s)	190, 423, 533, 849
Cac8I	GCNNGC	2 cut(s)	877, 998
CaiI	CAGNNNCTG	1 cut(s)	535
CfoI	GCGC	1 cut(s)	881
Cfr13I	GGNCC	3 cut(s)	180, 308, 483
ClaI	ATCGAT	1 cut(s)	600
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	2 cut(s)	923, 989
CviAII	CATG	2 cut(s)	241, 871
CviQI	GTAC	2 cut(s)	923, 989
DdeI	CTNAG	4 cut(s)	519, 536, 719, 822
DpnI	GATC	3 cut(s)	141, 744, 917
DpnII	GATC	3 cut(s)	139, 742, 915
DraI	TTTAAA	1 cut(s)	562
Eam1104I	CTCTTC	4 cut(s)	77, 89, 354, 813
EarI	CTCTTC	4 cut(s)	77, 89, 354, 813
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	1 cut(s)	87
Eco105I	TACGTA	1 cut(s)	992
Eco130I	CCWWGG	1 cut(s)	870
Eco24I	GRGCYC	3 cut(s)	35, 89, 107
Eco47I	GGWCC	3 cut(s)	180, 308, 483
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	572, 794
Eco81I	CCTNAGG	1 cut(s)	822
Eco88I	CYCGRG	4 cut(s)	106, 158, 681, 831
EcoICRI	GAGCTC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRI	GAATTC	3 cut(s)	153, 439, 777
EcoRII	CCWGG	3 cut(s)	62, 859, 972
EcoT14I	CCWWGG	1 cut(s)	870
EcoT38I	GRGCYC	3 cut(s)	35, 89, 107
ErhI	CCWWGG	1 cut(s)	870
Esp3I	CGTCTC	2 cut(s)	60, 950
FaeI	CATG	2 cut(s)	244, 874
FaiI	YATR	6 cut(s)	242, 321, 323, 569, 872, 968
FaqI	GGGAC	3 cut(s)	356, 631, 689
FatI	CATG	2 cut(s)	240, 870
FauNDI	CATATG	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	77, 146, 581, 842
FokI	GGATG	3 cut(s)	506, 827, 971
FriOI	GRGCYC	3 cut(s)	35, 89, 107
Fsp4HI	GCNGC	4 cut(s)	77, 146, 581, 842
GlaI	GCGC	1 cut(s)	880
GluI	GCNGC	4 cut(s)	77, 146, 581, 842
HaeIII	GGCC	1 cut(s)	912
HapII	CCGG	2 cut(s)	73, 133
HgaI	GACGC	1 cut(s)	932
HhaI	GCGC	1 cut(s)	881
Hin1I	GRCGYC	1 cut(s)	943
Hin1II	CATG	2 cut(s)	244, 874
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HincII	GTYRAC	2 cut(s)	499, 735
HindII	GTYRAC	2 cut(s)	499, 735
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	6 cut(s)	44, 69, 344, 542, 677, 854
HpaII	CCGG	2 cut(s)	73, 133
Hpy166II	GTNNAC	6 cut(s)	204, 370, 382, 499, 696, 735
Hpy188I	TCNGA	4 cut(s)	357, 445, 531, 552
Hpy188III	TCNNGA	7 cut(s)	108, 158, 233, 267, 650, 681, 812
Hpy8I	GTNNAC	6 cut(s)	204, 370, 382, 499, 696, 735
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	3 cut(s)	280, 308, 739
HpyCH4IV	ACGT	2 cut(s)	384, 991
HpyCH4V	TGCA	6 cut(s)	20, 148, 194, 428, 696, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	4 cut(s)	519, 536, 719, 822
HpySE526I	ACGT	2 cut(s)	384, 991
Hsp92I	GRCGYC	1 cut(s)	943
Hsp92II	CATG	2 cut(s)	244, 874
HspAI	GCGC	1 cut(s)	879
Kzo9I	GATC	3 cut(s)	139, 742, 915
LguI	GCTCTTC	2 cut(s)	77, 813
LmnI	GCTCC	2 cut(s)	30, 577
Lsp1109I	GCAGC	3 cut(s)	132, 567, 828
LweI	GCATC	2 cut(s)	203, 226
MaeII	ACGT	2 cut(s)	384, 991
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	3 cut(s)	141, 744, 917
MboI	GATC	3 cut(s)	139, 742, 915
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	5 cut(s)	35, 89, 107, 306, 698
MluCI	AATT	9 cut(s)	112, 153, 256, 359, 439, 726, 777, 962, 1002
MlyI	GAGTC	5 cut(s)	78, 338, 551, 671, 848
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	4 cut(s)	561, 639, 656, 1006
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	2 cut(s)	73, 133
MspR9I	CCNGG	4 cut(s)	64, 134, 861, 974
MvaI	CCWGG	3 cut(s)	64, 861, 974
MvnI	CGCG	1 cut(s)	879
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	870
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	3 cut(s)	139, 742, 915
NlaIII	CATG	2 cut(s)	244, 874
NlaIV	GGNNCC	4 cut(s)	7, 32, 181, 226
PaeR7I	CTCGAG	1 cut(s)	106
PciSI	GCTCTTC	2 cut(s)	77, 813
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	4 cut(s)	78, 147, 582, 843
PleI	GAGTC	5 cut(s)	77, 338, 550, 671, 848
PpsI	GAGTC	5 cut(s)	77, 338, 550, 671, 848
Ppu21I	YACGTR	1 cut(s)	992
PpuMI	RGGWCCY	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	483
Psp6I	CCWGG	3 cut(s)	62, 859, 972
PspGI	CCWGG	3 cut(s)	62, 859, 972
PspN4I	GGNNCC	4 cut(s)	7, 32, 181, 226
PspPI	GGNCC	3 cut(s)	180, 308, 483
PspPPI	RGGWCCY	1 cut(s)	483
PstI	CTGCAG	2 cut(s)	22, 430
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	742
RsaI	GTAC	2 cut(s)	924, 990
RsaNI	GTAC	2 cut(s)	923, 989
RseI	CAYNNNNRTG	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	89
SapI	GCTCTTC	2 cut(s)	77, 813
SaqAI	TTAA	4 cut(s)	561, 639, 656, 1006
SatI	GCNGC	4 cut(s)	77, 146, 581, 842
Sau3AI	GATC	3 cut(s)	139, 742, 915
Sau96I	GGNCC	3 cut(s)	180, 308, 483
SchI	GAGTC	5 cut(s)	78, 338, 551, 671, 848
ScrFI	CCNGG	4 cut(s)	64, 134, 861, 974
SduI	GDGCHC	5 cut(s)	35, 89, 107, 306, 698
SetI	ASST	9 cut(s)	89, 387, 437, 485, 582, 823, 828, 994, 1002
SfaNI	GCATC	2 cut(s)	203, 226
SfcI	CTRYAG	3 cut(s)	18, 426, 978
Sfr274I	CTCGAG	1 cut(s)	106
SinI	GGWCC	3 cut(s)	180, 308, 483
SlaI	CTCGAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	3 cut(s)	106, 404, 899
SmoI	CTYRAG	3 cut(s)	106, 404, 899
SnaBI	TACGTA	1 cut(s)	992
Sse9I	AATT	9 cut(s)	112, 153, 256, 359, 439, 726, 777, 962, 1002
SsiI	CCGC	4 cut(s)	76, 79, 130, 764
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	4 cut(s)	62, 132, 859, 972
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	3 cut(s)	280, 308, 739
TaiI	ACGT	2 cut(s)	387, 994
TaqI	TCGA	5 cut(s)	89, 107, 266, 297, 600
TasI	AATT	9 cut(s)	112, 153, 256, 359, 439, 726, 777, 962, 1002
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	4 cut(s)	561, 639, 656, 1006
Tru9I	TTAA	4 cut(s)	561, 639, 656, 1006
TscAI	CASTG	4 cut(s)	190, 430, 540, 856
TseI	GCWGC	3 cut(s)	145, 580, 841
TspDTI	ATGAA	4 cut(s)	411, 486, 831, 975
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	4 cut(s)	190, 430, 540, 856
VneI	GTGCAC	1 cut(s)	694
VpaK11BI	GGWCC	3 cut(s)	180, 308, 483
XapI	RAATTY	6 cut(s)	112, 153, 256, 439, 777, 962
XhoI	CTCGAG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.