Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006070

Physical Location & Seq

Genomic Coordinates Forward (+)

72300682 .. 72301808

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0605500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCACCAAAATCCTATCTTTCTCTTTTCACAGTCACTCTCCATCTCCTCCTCCTCGCCCTCTTTTCTTTCCTCTGTAATGCAACGGCAAACTCATCTCCGTTTGAGTTCCTCGAGCATATTAAGGGTTGTCACAAAGGTGACAAGGTCAAGGGCATCAACGACCTCAAGAAGTACCTTCAAAAGTTCGGTTACTTAAATTACGAGAACCAGAGACATTCTGATGACGATGATTTTGACGAGCACTTGGAGGAAGCCGTTAAGACTTACCAGCTCAATTTCCACCTCAAGTCCACCGGAACATTGGACGACAAAACCCTATCAACGATGATGATGCCTCGTTGTGGTGCAATTCATACCACTGTTCACTTCTCATTTTCCGATGGAAATCTAAAATGGCCTTCTTCAAAATACCATCTGACTTACGGTTTTCTCCCCGGCACCCCATCAGAAGCCCAGGGCGCTGTCGCACAGGCTTTCTCAACATGGGCTAAAAACACTCACTTCAAATTCAGCAAGGCTCAAAATTACCAGAGTGCTGATTTGAAGGTTAGCTTTCATAAGGGTGATCATAGAGACAGGAATTCATTTGATGGGCCTGGCGGACAGCTGGCCCATGCTGCTTACCCTACGGAGGGAGCATTGCACTACGACGCAGATGAGACTTGGTCTGTAGGTGCCAAACCAGGTGCCATGGACATTGAGAGTGTTGGTTTGCATGAAATCGGGCACCTTCTGGGACTTGGACACAGCTCAGTGGAGGAAGCTATCATGTATCCAACCATCCCCGAGGGAGCGTATAAAAGTTTGCATGAGGACGATATTCAAGGAATAAAAGCTTTATACAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

284

Amino Acids

31.61

Weight (kDa)

6.03

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	53 - 110	1.7e-11	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	132 - 282	1.2e-45	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02750 AT3G02750 AT3G02750 AT5G36250 AT5G36250 AT5G36250
fragaria_vesca	FvH4_6g00430 FvH4_6g00430 FvH4_6g00430 FvH4_6g00430 FvH4_6g00430
malus_domestica	MD04G1245600.v1.1 MD13G1061100.v1.1
prunus_persica	Prupe.6G362100_v2.0.a1
pyrus_communis	pycom04g21650 pycom12g23920
rosa_chinensis	RchiOBHm_Chr3g0447761
rosa_laevigata	RLG00000025973
rosa_multiflora	Rmu_ssc0000391.1_g000017
rosa_roxburghii	Rroxscaffold_6G00425960
rosa_rugosa	Rorug02G0605400 Rorug02G0605500
rosa_samantha	Rh3AG005100 Rh3BG004700 Rh3CG005100 Rh3DG005000
rosa_wichuraiana	Rw3G000380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	4, 440, 677, 689, 729
AciI	CCGC	1 cut(s)	603
AclI	AACGTT	1 cut(s)	849
AcsI	RAATTY	2 cut(s)	509, 583
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	344, 634, 635
AgsI	TTSAA	5 cut(s)	182, 408, 508, 547, 827
AjnI	CCWGG	3 cut(s)	456, 598, 685
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	6 cut(s)	274, 555, 610, 753, 767, 839
AluI	AGCT	6 cut(s)	274, 555, 610, 753, 767, 839
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	3 cut(s)	208, 570, 656
Ama87I	CYCGRG	2 cut(s)	113, 788
AoxI	GGCC	3 cut(s)	398, 596, 612
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	2 cut(s)	509, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	596, 613
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	152, 578
AvaI	CYCGRG	2 cut(s)	113, 788
BaeGI	GKGCMC	1 cut(s)	732
BanI	GGYRCC	5 cut(s)	4, 440, 677, 689, 729
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	6 cut(s)	51, 377, 423, 454, 587, 791
BceAI	ACGGC	2 cut(s)	102, 242
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	3 cut(s)	458, 600, 687
BciVI	GTATCC	1 cut(s)	786
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	3 cut(s)	208, 570, 656
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	786
BisI	GCNGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	622
Bme1390I	CCNGG	4 cut(s)	438, 458, 600, 687
BmeT110I	CYCGRG	2 cut(s)	113, 788
BmgT120I	GGNCC	2 cut(s)	596, 613
BmiI	GGNNCC	5 cut(s)	6, 442, 679, 691, 731
BmrFI	CCNGG	4 cut(s)	438, 458, 600, 687
BmsI	GCATC	2 cut(s)	165, 324
BpuEI	CTTGAG	2 cut(s)	152, 272
BpuMI	CCSGG	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	5 cut(s)	436, 456, 457, 693, 789
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 634, 635
Bse3DI	GCAATG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	3 cut(s)	458, 600, 687
BseDI	CCNNGG	5 cut(s)	436, 456, 457, 693, 789
BseGI	GGATG	1 cut(s)	783
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	344, 634, 635
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	1 cut(s)	768
BseRI	GAGGAG	3 cut(s)	38, 41, 44
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	1 cut(s)	607
BshFI	GGCC	3 cut(s)	400, 598, 614
BshNI	GGYRCC	5 cut(s)	4, 440, 677, 689, 729
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	2 cut(s)	113, 788
BsiSI	CCGG	2 cut(s)	297, 438
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	3 cut(s)	344, 634, 635
BsmAI	GTCTC	3 cut(s)	208, 570, 656
BsmFI	GGGAC	1 cut(s)	753
BsnI	GGCC	3 cut(s)	400, 598, 614
BsoBI	CYCGRG	2 cut(s)	113, 788
Bsp1286I	GDGCHC	2 cut(s)	246, 732
Bsp143I	GATC	1 cut(s)	568
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	3 cut(s)	400, 598, 614
BspCNI	CTCAG	1 cut(s)	767
BspLI	GGNNCC	5 cut(s)	6, 442, 679, 691, 731
BspT107I	GGYRCC	5 cut(s)	4, 440, 677, 689, 729
BsrDI	GCAATG	1 cut(s)	641
BssECI	CCNNGG	5 cut(s)	436, 456, 457, 693, 789
BssMI	GATC	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	693
Bst2UI	CCWGG	3 cut(s)	458, 600, 687
Bst4CI	ACNGT	3 cut(s)	34, 364, 428
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	1 cut(s)	754
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	1 cut(s)	783
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	3 cut(s)	208, 570, 656
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 620
BstNI	CCWGG	3 cut(s)	458, 600, 687
BstSCI	CCNGG	4 cut(s)	436, 456, 598, 685
BstSFI	CTRYAG	1 cut(s)	672
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	786
BsuRI	GGCC	3 cut(s)	400, 598, 614
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	360, 762
Cac8I	GCNNGC	1 cut(s)	612
CfoI	GCGC	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	596, 613
CseI	GACGC	1 cut(s)	662
CsiI	ACCWGGT	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	6 cut(s)	486, 617, 694, 719, 772, 812
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	754
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
EciI	GGCGGA	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	693
Eco88I	CYCGRG	2 cut(s)	113, 788
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	3 cut(s)	456, 598, 685
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	6 cut(s)	489, 620, 697, 722, 775, 815
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	6 cut(s)	485, 616, 693, 718, 771, 811
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	621
FokI	GGATG	1 cut(s)	770
Fsp4HI	GCNGC	1 cut(s)	621
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	1 cut(s)	621
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	400, 598, 614
HapII	CCGG	2 cut(s)	297, 438
HgaI	GACGC	1 cut(s)	662
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	6 cut(s)	489, 620, 697, 722, 775, 815
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HindIII	AAGCTT	1 cut(s)	837
HpaII	CCGG	2 cut(s)	297, 438
HphI	GGTGA	2 cut(s)	152, 578
Hpy166II	GTNNAC	2 cut(s)	294, 367
Hpy188I	TCNGA	4 cut(s)	223, 382, 420, 451
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	294, 367
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	4 cut(s)	188, 411, 541, 743
HpyCH4III	ACNGT	3 cut(s)	34, 364, 428
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	5 cut(s)	83, 350, 646, 718, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 620
HpyF3I	CTNAG	1 cut(s)	754
HpySE526I	ACGT	1 cut(s)	849
Hsp92II	CATG	6 cut(s)	489, 620, 697, 722, 775, 815
HspAI	GCGC	1 cut(s)	462
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	2 cut(s)	638, 794
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	2 cut(s)	165, 324
MabI	ACCWGGT	1 cut(s)	685
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	4 cut(s)	34, 131, 140, 191
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	1 cut(s)	396
MhlI	GDGCHC	2 cut(s)	246, 732
MluCI	AATT	6 cut(s)	199, 277, 351, 509, 526, 583
MmeI	TCCRAC	1 cut(s)	803
MseI	TTAA	3 cut(s)	123, 197, 261
MslI	CAYNNNNRTG	3 cut(s)	138, 222, 564
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	2 cut(s)	297, 438
MspR9I	CCNGG	4 cut(s)	438, 458, 600, 687
MvaI	CCWGG	3 cut(s)	458, 600, 687
MwoI	GCNNNNNNNGC	2 cut(s)	461, 620
NciI	CCSGG	1 cut(s)	438
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	1 cut(s)	568
NlaIII	CATG	6 cut(s)	489, 620, 697, 722, 775, 815
NlaIV	GGNNCC	5 cut(s)	6, 442, 679, 691, 731
NmuCI	GTSAC	3 cut(s)	34, 131, 140
OliI	CACNNNNGTG	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	113
PasI	CCCWGGG	1 cut(s)	457
PflFI	GACNNNGTC	2 cut(s)	146, 667
PkrI	GCNGC	1 cut(s)	622
Psp1406I	AACGTT	1 cut(s)	849
Psp6I	CCWGG	3 cut(s)	456, 598, 685
PspGI	CCWGG	3 cut(s)	456, 598, 685
PspN4I	GGNNCC	5 cut(s)	6, 442, 679, 691, 731
PspPI	GGNCC	2 cut(s)	596, 613
PspXI	VCTCGAGB	1 cut(s)	113
PsyI	GACNNNGTC	2 cut(s)	146, 667
PvuII	CAGCTG	1 cut(s)	610
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	3 cut(s)	138, 222, 564
SaqAI	TTAA	3 cut(s)	123, 197, 261
SatI	GCNGC	1 cut(s)	621
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	2 cut(s)	596, 613
ScrFI	CCNGG	4 cut(s)	438, 458, 600, 687
SduI	GDGCHC	2 cut(s)	246, 732
SexAI	ACCWGGT	1 cut(s)	685
SfaNI	GCATC	2 cut(s)	165, 324
SfcI	CTRYAG	1 cut(s)	672
Sfr274I	CTCGAG	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	3 cut(s)	138, 222, 564
SmlI	CTYRAG	3 cut(s)	113, 167, 287
SmoI	CTYRAG	3 cut(s)	113, 167, 287
Sse9I	AATT	6 cut(s)	199, 277, 351, 509, 526, 583
SsiI	CCGC	1 cut(s)	603
StyD4I	CCNGG	4 cut(s)	436, 456, 598, 685
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	3 cut(s)	34, 364, 428
TaiI	ACGT	1 cut(s)	852
TaqI	TCGA	1 cut(s)	114
TasI	AATT	6 cut(s)	199, 277, 351, 509, 526, 583
Tru1I	TTAA	3 cut(s)	123, 197, 261
Tru9I	TTAA	3 cut(s)	123, 197, 261
TscAI	CASTG	2 cut(s)	367, 762
TseFI	GTSAC	3 cut(s)	34, 131, 140
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	3 cut(s)	34, 131, 140
TspDTI	ATGAA	4 cut(s)	344, 548, 576, 735
TspGWI	ACGGA	2 cut(s)	90, 647
TspRI	CASTG	2 cut(s)	367, 762
Tth111I	GACNNNGTC	2 cut(s)	146, 667
XapI	RAATTY	2 cut(s)	509, 583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.