Rorug02G0605400

phosphatase 2c

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
72292842 .. 72295142
2301 bp
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UTR
Exon/CDS
Intron
Rorug02G0605400.1

Sequence Viewer

Length: 366 bp
ATGGCGTTTCATCCCTTAACAGTAAACCGATCCTTCTCAATATTTGCCCCCAAAACGCTTTTGGATCTCTCTCAGAGCGAAGAGTACTGCTTTGGTTTGTTTGTTGATCCACAGTTTTTAGCACAGAGAGGAGCTGTTGCTTGCGATTTGCGAATTTGGATTTGGATCAAGTTGTTTGCTTTTGATTCGTCATCAGCAAAGAATAGATTCGGCGAAGAGGACCTTTGCTTTAATTTTAAGGCTTGCAATAGATTCTATGCGAAAGAGTTTACACGTCATTCTGCTGCCACTGTTCCTTTGTCTATTGATTCTGGGAACAGTGTGCTGGCAAATTGTTTAACTGTTTTAAATTCAGAGTATGGTTAG

Protein Analysis

121

Amino Acids

13.65

Weight (kDa)

6.06

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 24, 72, 101, 173
AcsI RAATTY 2 cut(s) 153, 349
AfaI GTAC 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 272
AjiI CACGTC 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 4 cut(s) 24, 72, 101, 173
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 153, 349
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 271
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmcAI AGTACT 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 220
BsaBI GATNNNNATC 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 164
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 164
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 271
Bsp143I GATC 4 cut(s) 29, 64, 106, 165
BspCNI CTCAG 1 cut(s) 85
BspPI GGATC 4 cut(s) 24, 72, 101, 173
BssMI GATC 4 cut(s) 29, 64, 106, 165
Bst4CI ACNGT 5 cut(s) 22, 114, 292, 320, 343
Bst6I CTCTTC 2 cut(s) 75, 210
BstC8I GCNNGC 3 cut(s) 142, 244, 327
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 32, 67, 109, 168
BstMBI GATC 4 cut(s) 29, 64, 106, 165
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BtrI CACGTC 1 cut(s) 275
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 288, 325
Cac8I GCNNGC 3 cut(s) 142, 244, 327
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 85
CviJI RGCY 2 cut(s) 134, 242
CviKI_1 RGCY 2 cut(s) 134, 242
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 72
DpnI GATC 4 cut(s) 31, 66, 108, 167
DpnII GATC 4 cut(s) 29, 64, 106, 165
DraI TTTAAA 1 cut(s) 348
Eam1104I CTCTTC 2 cut(s) 75, 210
EarI CTCTTC 2 cut(s) 75, 210
Eco47I GGWCC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 220
FaiI YATR 2 cut(s) 258, 360
FalI AAGNNNNNCTT 2 cut(s) 207, 239
Fnu4HI GCNGC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
HinfI GANTC 4 cut(s) 185, 207, 252, 308
Hpy166II GTNNAC 2 cut(s) 25, 270
Hpy188I TCNGA 2 cut(s) 75, 355
Hpy8I GTNNAC 2 cut(s) 25, 270
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 5 cut(s) 22, 114, 292, 320, 343
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 274
Kzo9I GATC 4 cut(s) 29, 64, 106, 165
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 2 cut(s) 297, 311
Lsp1109I GCAGC 1 cut(s) 271
MaeII ACGT 1 cut(s) 274
MalI GATC 4 cut(s) 31, 66, 108, 167
MboI GATC 4 cut(s) 29, 64, 106, 165
MboII GAAGA 2 cut(s) 92, 227
MflI RGATCY 1 cut(s) 64
MluCI AATT 4 cut(s) 153, 232, 331, 349
MnlI CCTC 2 cut(s) 122, 211
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 5 cut(s) 17, 231, 237, 338, 347
NdeII GATC 4 cut(s) 29, 64, 106, 165
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 4 cut(s) 185, 207, 252, 308
PkrI GCNGC 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 5 cut(s) 17, 231, 237, 338, 347
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 4 cut(s) 29, 64, 106, 165
Sau96I GGNCC 1 cut(s) 220
ScaI AGTACT 1 cut(s) 86
SetI ASST 3 cut(s) 136, 225, 277
SgeI CNNG 6 cut(s) 153, 181, 255, 285, 324, 338
SinI GGWCC 1 cut(s) 220
Sse9I AATT 4 cut(s) 153, 232, 331, 349
SspI AATATT 1 cut(s) 42
TaaI ACNGT 5 cut(s) 22, 114, 292, 320, 343
TaiI ACGT 1 cut(s) 277
TasI AATT 4 cut(s) 153, 232, 331, 349
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 4 cut(s) 185, 207, 252, 308
Tru1I TTAA 5 cut(s) 17, 231, 237, 338, 347
Tru9I TTAA 5 cut(s) 17, 231, 237, 338, 347
TscAI CASTG 2 cut(s) 295, 325
TseI GCWGC 1 cut(s) 284
TspRI CASTG 2 cut(s) 295, 325
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 2 cut(s) 153, 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.