pycom05g00140

Glycerophosphoryl diester phosphodiesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0012249
Physical Location & Seq
Reverse (-)
169229 .. 173433
4205 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGTGGATGTTTCAGGTGAGTACGAGTCGTATGCCCAGAATGGCGATCTCAACGAGAGTTGGGAGGAGGCAAGCGTTGCTGCATCAGAGTCTTCAGAGACGGCAGCAGTGGAGATTTTCTTCAAAGAGAGTCTTGTTTCGCGCGATTCTCGTAAGCGTGGCCTTCATCGCTTTTGTCCCTCCCATTTTCTTCCTCTTCAGACTCAAACTCTTTCATCAGATGCAGTCGAGAAAGTGTGGTTGGCTAAATGAGCCTCCTCTTGTATGTGCGCACGGAGGTGACTCTAGTAAGGCCTTTCCTAACACGATGGCTGCATATCGTTTTGCTCTTCACTCTCAAGTCGACTGCATTGAGATTGATGTTTCTCGTTCTTTAGATGGAGTTTTGCTTGCGCTCCATGACAGGGATTTGCAGAGGATAACTGGAAACAATACTTCTAAGGTTGGGTACTTAAGTATGAAAGAGATAAAAGATCTTGGTTCCATGGATCATTCTGGAAAGGTCCCTGATAAAAATATTCTTACAATTGAAGAGGCTTTGGAGTTAGTTTCAGGTTCAGTTCGGCAGGTGATTCTAGATGTAAAGGTCGGGCCTCCCTCATTTGAAAAAGGGCTTGCTAAGGATGTACTTTCTGTTGTTAAGAGGGTGCAGTGTAAGAACTGCCTTGTATGGGCTAAAAGTGACAATTTAGCAAGGGATGTAATCAGACTCTCATCAGATGTCACGGTCGGGTACATTGTTATGATGGATCCGTTGACCGGGGCCAGAAGCAACTTACTGAGGATGACGGGTGCTGGTGTTGTTGGTGTGTACCACCCATTGATTGATGAGAAGCTTGTGAGAATTCTGCATGGGAGAAAGAAGAAAGTGTATGCGTGGACTGTCGATGATGTGGATTCCATGCAAGAAATGTTGTCTGAGCACATTGATGCCGTCGTAACGAGCAACCCAACTGTACTTCAAGGTATAATGCAAGATATCAAAAGAGAGTGTCTGGAGCACGGTTTTTCCTTATCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

341

Amino Acids

38.29

Weight (kDa)

9.45

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 93 - 317 5.5e-23 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 556
Acc16I TGCGCA 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 556
AccI GTMKAC 1 cut(s) 342
AccII CGCG 2 cut(s) 141, 143
AclWI GGATC 3 cut(s) 495, 743, 756
AcsI RAATTY 1 cut(s) 843
AcuI CTGAAG 2 cut(s) 77, 181
AfaI GTAC 6 cut(s) 22, 449, 627, 734, 812, 957
AfiI CCNNNNNNNGG 3 cut(s) 403, 670, 758
AflII CTTAAG 1 cut(s) 451
AgsI TTSAA 4 cut(s) 123, 530, 605, 962
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 1 cut(s) 835
AluI AGCT 1 cut(s) 835
Alw21I GWGCWC 2 cut(s) 924, 1002
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 3 cut(s) 495, 743, 756
AoxI GGCC 4 cut(s) 159, 291, 590, 762
ApeKI GCWGC 3 cut(s) 79, 103, 311
ApoI RAATTY 1 cut(s) 843
AspLEI GCGC 3 cut(s) 143, 271, 394
AspS9I GGNCC 3 cut(s) 502, 590, 762
AsuC2I CCSGG 1 cut(s) 760
AsuHPI GGTGA 3 cut(s) 28, 290, 580
AvaII GGWCC 1 cut(s) 502
BaeI ACNNNNGTAYC 2 cut(s) 439, 472
BamHI GGATCC 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 924, 1002
BbvI GCAGC 3 cut(s) 66, 115, 298
BccI CCATC 3 cut(s) 301, 371, 739
BceAI ACGGC 2 cut(s) 116, 917
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BcnI CCSGG 1 cut(s) 760
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 2 cut(s) 285, 575
BfrI CTTAAG 1 cut(s) 451
BfuAI ACCTGC 1 cut(s) 556
BglII AGATCT 1 cut(s) 472
BisI GCNGC 3 cut(s) 80, 104, 312
BlsI GCNGC 3 cut(s) 81, 105, 313
Bme1390I CCNGG 1 cut(s) 760
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 3 cut(s) 502, 590, 762
BmiI GGNNCC 4 cut(s) 481, 504, 750, 763
BmrFI CCNGG 1 cut(s) 760
BmsI GCATC 3 cut(s) 91, 210, 919
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 1016
Bpu10I CCTNAGC 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 760
BsaJI CCNNGG 2 cut(s) 483, 759
Bsc4I CCNNNNNNNGG 3 cut(s) 403, 670, 758
Bse1I ACTGG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 483, 759
BseGI GGATG 4 cut(s) 12, 628, 703, 789
BseLI CCNNNNNNNGG 3 cut(s) 403, 670, 758
BseMII CTCAG 2 cut(s) 770, 909
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 2 cut(s) 79, 246
BseXI GCAGC 3 cut(s) 66, 115, 298
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 2 cut(s) 141, 143
Bsh1285I CGRYCG 1 cut(s) 729
BshFI GGCC 4 cut(s) 161, 293, 592, 764
BsiEI CGRYCG 1 cut(s) 729
BsiHKAI GWGCWC 2 cut(s) 924, 1002
BsiSI CCGG 1 cut(s) 759
BslFI GGGAC 2 cut(s) 161, 488
BslI CCNNNNNNNGG 3 cut(s) 403, 670, 758
BsmAI GTCTC 1 cut(s) 91
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 2 cut(s) 161, 488
BsnI GGCC 4 cut(s) 161, 293, 592, 764
Bsp1286I GDGCHC 2 cut(s) 924, 1002
Bsp143I GATC 4 cut(s) 45, 472, 487, 748
Bsp19I CCATGG 1 cut(s) 483
BspANI GGCC 4 cut(s) 161, 293, 592, 764
BspCNI CTCAG 2 cut(s) 771, 910
BspFNI CGCG 2 cut(s) 141, 143
BspLI GGNNCC 4 cut(s) 481, 504, 750, 763
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 3 cut(s) 495, 743, 756
BspQI GCTCTTC 1 cut(s) 333
BspTI CTTAAG 1 cut(s) 451
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 483, 759
BssMI GATC 4 cut(s) 45, 472, 487, 748
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 727, 883, 955, 1004
Bst6I CTCTTC 3 cut(s) 200, 333, 525
BstAFI CTTAAG 1 cut(s) 451
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 72, 390, 615
BstDEI CTNAG 4 cut(s) 438, 618, 779, 918
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 4 cut(s) 12, 628, 703, 789
BstFNI CGCG 2 cut(s) 141, 143
BstHHI GCGC 3 cut(s) 143, 271, 394
BstKTI GATC 4 cut(s) 48, 475, 490, 751
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 4 cut(s) 45, 472, 487, 748
BstMCI CGRYCG 1 cut(s) 729
BstMWI GCNNNNNNNGC 3 cut(s) 76, 167, 250
BstSCI CCNGG 1 cut(s) 758
BstUI CGCG 2 cut(s) 141, 143
BstV1I GCAGC 3 cut(s) 66, 115, 298
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 472, 748
BstYI RGATCY 2 cut(s) 472, 748
BsuRI GGCC 4 cut(s) 161, 293, 592, 764
BtgI CCRYGG 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 4 cut(s) 12, 628, 703, 789
BtsI GCAGTG 2 cut(s) 113, 656
BtsIMutI CAGTG 2 cut(s) 113, 656
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 3 cut(s) 72, 390, 615
CfoI GCGC 3 cut(s) 143, 271, 394
Cfr13I GGNCC 3 cut(s) 502, 590, 762
Csp6I GTAC 6 cut(s) 21, 448, 626, 733, 811, 956
CviAII CATG 4 cut(s) 398, 484, 851, 901
CviQI GTAC 6 cut(s) 21, 448, 626, 733, 811, 956
DdeI CTNAG 4 cut(s) 438, 618, 779, 918
DpnI GATC 4 cut(s) 47, 474, 489, 750
DpnII GATC 4 cut(s) 45, 472, 487, 748
Eam1104I CTCTTC 3 cut(s) 200, 333, 525
EarI CTCTTC 3 cut(s) 200, 333, 525
Eco130I CCWWGG 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 293
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 77, 181
EcoO109I RGGNCCY 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 843
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 4 cut(s) 401, 487, 854, 904
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 2 cut(s) 161, 488
FatI CATG 4 cut(s) 397, 483, 850, 900
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 80, 104, 312
FokI GGATG 4 cut(s) 19, 635, 710, 796
Fsp4HI GCNGC 3 cut(s) 80, 104, 312
FspAI RTGCGCAY 1 cut(s) 270
FspBI CTAG 2 cut(s) 285, 575
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 3 cut(s) 142, 270, 393
GluI GCNGC 3 cut(s) 80, 104, 312
GsuI CTGGAG 1 cut(s) 1016
HaeIII GGCC 4 cut(s) 161, 293, 592, 764
HapII CCGG 1 cut(s) 759
HhaI GCGC 3 cut(s) 143, 271, 394
Hin1II CATG 4 cut(s) 401, 487, 854, 904
Hin6I GCGC 3 cut(s) 141, 269, 392
HinP1I GCGC 3 cut(s) 141, 269, 392
HincII GTYRAC 2 cut(s) 343, 756
HindII GTYRAC 2 cut(s) 343, 756
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 9 cut(s) 25, 88, 129, 145, 201, 281, 571, 708, 896
HpaII CCGG 1 cut(s) 759
HphI GGTGA 3 cut(s) 28, 290, 580
Hpy166II GTNNAC 4 cut(s) 343, 756, 811, 879
Hpy188I TCNGA 8 cut(s) 87, 96, 200, 219, 707, 718, 919, 1018
Hpy188III TCNNGA 4 cut(s) 228, 495, 575, 995
Hpy8I GTNNAC 4 cut(s) 343, 756, 811, 879
Hpy99I CGWCG 1 cut(s) 938
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 4 cut(s) 727, 883, 955, 1004
HpyCH4V TGCA 9 cut(s) 82, 223, 314, 348, 412, 649, 850, 904, 973
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 167, 250
HpyF3I CTNAG 4 cut(s) 438, 618, 779, 918
Hsp92II CATG 4 cut(s) 401, 487, 854, 904
HspAI GCGC 3 cut(s) 141, 269, 392
Kzo9I GATC 4 cut(s) 45, 472, 487, 748
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 2 cut(s) 399, 997
Lsp1109I GCAGC 3 cut(s) 66, 115, 298
LweI GCATC 3 cut(s) 91, 210, 919
MaeI CTAG 2 cut(s) 285, 575
MaeIII GTNAC 4 cut(s) 278, 680, 721, 937
MalI GATC 4 cut(s) 47, 474, 489, 750
MboI GATC 4 cut(s) 45, 472, 487, 748
MboII GAAGA 7 cut(s) 83, 111, 181, 187, 320, 542, 874
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 2 cut(s) 472, 748
MhlI GDGCHC 2 cut(s) 924, 1002
MluCI AATT 3 cut(s) 525, 685, 843
MlyI GAGTC 6 cut(s) 34, 97, 138, 195, 275, 702
MseI TTAA 2 cut(s) 452, 639
MslI CAYNNNNRTG 3 cut(s) 276, 740, 927
MspCI CTTAAG 1 cut(s) 451
MspI CCGG 1 cut(s) 759
MspR9I CCNGG 1 cut(s) 760
MunI CAATTG 1 cut(s) 525
MvnI CGCG 2 cut(s) 141, 143
MwoI GCNNNNNNNGC 3 cut(s) 76, 167, 250
NciI CCSGG 1 cut(s) 760
NcoI CCATGG 1 cut(s) 483
NdeII GATC 4 cut(s) 45, 472, 487, 748
NlaIII CATG 4 cut(s) 401, 487, 854, 904
NlaIV GGNNCC 4 cut(s) 481, 504, 750, 763
NmuCI GTSAC 3 cut(s) 278, 680, 721
NsbI TGCGCA 1 cut(s) 270
OliI CACNNNNGTG 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 556
PceI AGGCCT 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 333
PfeI GAWTC 3 cut(s) 145, 571, 896
PkrI GCNGC 3 cut(s) 81, 105, 313
PleI GAGTC 6 cut(s) 33, 96, 137, 195, 275, 702
PpsI GAGTC 6 cut(s) 33, 96, 137, 195, 275, 702
PpuMI RGGWCCY 1 cut(s) 502
Psp5II RGGWCCY 1 cut(s) 502
PspN4I GGNNCC 4 cut(s) 481, 504, 750, 763
PspPI GGNCC 3 cut(s) 502, 590, 762
PspPPI RGGWCCY 1 cut(s) 502
PsuI RGATCY 2 cut(s) 472, 748
RsaI GTAC 6 cut(s) 22, 449, 627, 734, 812, 957
RsaNI GTAC 6 cut(s) 21, 448, 626, 733, 811, 956
RseI CAYNNNNRTG 3 cut(s) 276, 740, 927
SalI GTCGAC 1 cut(s) 341
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 452, 639
SatI GCNGC 3 cut(s) 80, 104, 312
Sau3AI GATC 4 cut(s) 45, 472, 487, 748
Sau96I GGNCC 3 cut(s) 502, 590, 762
SchI GAGTC 6 cut(s) 34, 97, 138, 195, 275, 702
ScrFI CCNGG 1 cut(s) 760
SduI GDGCHC 2 cut(s) 924, 1002
SetI ASST 9 cut(s) 18, 280, 444, 504, 556, 570, 588, 837, 967
SfaNI GCATC 3 cut(s) 91, 210, 919
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 3 cut(s) 276, 740, 927
SmlI CTYRAG 2 cut(s) 336, 451
SmoI CTYRAG 2 cut(s) 336, 451
Sse9I AATT 3 cut(s) 525, 685, 843
SseBI AGGCCT 1 cut(s) 293
SspI AATATT 1 cut(s) 517
SspMI CTAG 2 cut(s) 285, 575
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 758
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 4 cut(s) 727, 883, 955, 1004
TaqI TCGA 3 cut(s) 227, 342, 885
TasI AATT 3 cut(s) 525, 685, 843
TatI WGTACW 2 cut(s) 625, 955
TfiI GAWTC 3 cut(s) 145, 571, 896
Tru1I TTAA 2 cut(s) 452, 639
Tru9I TTAA 2 cut(s) 452, 639
TscAI CASTG 2 cut(s) 113, 656
TseFI GTSAC 3 cut(s) 278, 680, 721
TseI GCWGC 3 cut(s) 79, 103, 311
Tsp45I GTSAC 3 cut(s) 278, 680, 721
TspDTI ATGAA 3 cut(s) 154, 203, 473
TspGWI ACGGA 2 cut(s) 288, 741
TspRI CASTG 2 cut(s) 113, 656
Vha464I CTTAAG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 843
XbaI TCTAGA 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 285, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.