pycom05g00900

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0008607
Physical Location & Seq
Reverse (-)
1091088 .. 1094745
3658 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1896 bp
ATGAGAGCTTCCTCCCCAACTCCCATTGAGCACCGACACCGCCTTTCTGCTTCTGCCAGTGAAGACTGTAACAGAAGAAGGCCCCAGAGGAACAAGGATTTTAAAGATAGGAACTTGAAGCCCACCTTGAAGCTTGTGTTGGCTGTTATCATACTGGGGACTTTTCTCACACTCTTCTTCTCTCCTGGTGTTCATCATTCAGATCATAAATCCCGTTCCGTATCTAACCCAAATTCTGATGAAAGGTTGACAAAAAAGAGTGTTGCTCAAGATTTACGTTATGTATCATCTGTAGAAACTAACTGGGATGAAATTTCTGATGCTATTGAAAATCTGACGGACAAAAAGGATTATCAGGGAATTGGCCTGTTAAACTTTAATGACAATGAGATTGACCATTGGAAGGAGCTGTTGCCAGATTGTGAGCATGTTGTCCTACGCCTCAACCATGCGTCAAAAAACATAACATGGGAAACCCTGTACCCTGAATGGATAGATGAAGAGGAAGAATTTGAAGTTCCTACTTGTCCCTCTCTACCAAAGCTTCAAATTCCTGGCAAACCTCGGCTTGATCTGGTTGCTGTCAAGCTTCCCTGCAACAAGTCAGGCAGCTGGTCAAGAGATGTGGCTCGGTTGCACTTGCAGCTTGAAGCAGCAAGGCTGGCTGCAGCTTCCAAAGGGTATCACCCAGTGCATGTGCTTTTGGTGACAGACTGTTTTCCAATCCCAAATTTGTTTACTTGCAAAGAGCTTGTCAGACGGGAAGGGAATGTTTGGCTTTATGAACCAAAACTGAATACGTTGAGAGATAAGCTGCAGCTCCCTGTAGGGTCATGTGAGCTGTCAGTTCCTCTCACGGCTAAAGAAAGCTTTTACTCGGAAAGAGCCCACCGAGAAGCATATGCAACAATCATACATTCTGCCCATGTATATGTTTGTGGAGCCATTGCTGCAGCTCAGAGCATCCGTATGTCTGGTTCAACGCGAGATCTTGTAATACTTGTTGATGAAACAATCAGTGAGTATCATCGTGGAGGATTGGCAGCTGCTGGGTGGAAGGTTCACACGATCCAAAGAATCAGGAACCCTAAAGCTGAACCAGAAGCATACAATGAATGGAACTACAGCAAATTCCGTCTTTGGCAGTTAACTGATTATGACAAGATCATTTTCATTGATGCTGACATGCTTATACTCAGGAACATTGACTTCCTGTTTGAGATGCCAGAAATATCAGCGACGGGAAATAATGCCACTCTGTTCAACTCAGGTGTGATGGTTATCGAACCATCAAATTGTACATTCCAGCTGCTCATGGATCATATAGATGAAATCGTCTCCTACAATGGTGGAGACCAGGGTTATTTGAATGAGGTATTTACATGGTGGCACAGGATTCCAAAACATATGAACTTCTTGAAACATTTCTGGGAAGGTGATGAGCCAGAGAAAAAGGAGAGGAAAACTCACCTCTTTGCAGCTGAACCTCCAATCCTCTACGTCCTCCATTACCTGGGAAATAAACCATGGCTTTGCTTCCGTGACTATGACTGCAATTGGAATGTGGACTTTCTGCAGGAGTTTGCCAGTAATGTCGCACATAGAAGGTGGTGGAAAGTGCATGATGCTATGCCGCAAAACTTGCAAAAGTTCTGTTTGCTTCGGTCCAAGCAGAAGGCAGCACTTGAGTGGGATCGGAGACAAGCTGAAAAAGCAAATTACAGTGATGGTCACTGGAAAATTAAGATAAAAGACAAGCGTTTAAAAACATGCTTCGAGGATTTCTGCTTCTGGGAGAGCATGTTATGGCACTGGGGTGAAAAGAATTGGACGGATAATGCTACTGCTACTCTGTCACCACCTGCACTTACAACTGCATCCGTCTCTTCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

632

Amino Acids

73.09

Weight (kDa)

6.61

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 305 - 409 1.3e-09 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1870
Acc36I ACCTGC 1 cut(s) 1870
AccB7I CCANNNNNTGG 1 cut(s) 1513
AccII CGCG 1 cut(s) 985
AciI CCGC 2 cut(s) 40, 1634
AclWI GGATC 3 cut(s) 1063, 1326, 1701
AcsI RAATTY 6 cut(s) 232, 312, 509, 549, 730, 1130
AdeI CACNNNGTG 1 cut(s) 691
AfaI GTAC 2 cut(s) 482, 1300
AfiI CCNNNNNNNGG 2 cut(s) 403, 1513
AjnI CCWGG 4 cut(s) 184, 553, 1356, 1512
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AleI CACNNNNGTG 2 cut(s) 1687, 1815
AloI GAACNNNNNNTCC 2 cut(s) 1476, 1508
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 4 cut(s) 1342, 1347, 1693, 1888
AlwI GGATC 3 cut(s) 1063, 1326, 1701
AlwNI CAGNNNCTG 1 cut(s) 1049
AoxI GGCC 2 cut(s) 80, 364
ApoI RAATTY 6 cut(s) 232, 312, 509, 549, 730, 1130
ArsI GACNNNNNNTTYG 4 cut(s) 738, 770, 1199, 1231
Asp700I GAANNNNTTC 1 cut(s) 1424
AspS9I GGNCC 2 cut(s) 81, 1665
AsuHPI GGTGA 6 cut(s) 677, 718, 1448, 1460, 1829, 1848
AvaII GGWCC 1 cut(s) 1665
BanII GRGCYC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 33
BccI CCATC 3 cut(s) 1270, 1297, 1721
BceAI ACGGC 1 cut(s) 873
BciT130I CCWGG 4 cut(s) 186, 555, 1358, 1514
BcoDI GTCTC 4 cut(s) 1342, 1347, 1693, 1888
BfmI CTRYAG 7 cut(s) 291, 666, 815, 825, 951, 1123, 1574
BfuAI ACCTGC 1 cut(s) 1870
BglII AGATCT 1 cut(s) 988
Bme1390I CCNGG 4 cut(s) 186, 555, 1358, 1514
Bme18I GGWCC 1 cut(s) 1665
BmgT120I GGNCC 2 cut(s) 81, 1665
BmiI GGNNCC 3 cut(s) 83, 943, 1085
BmrFI CCNGG 4 cut(s) 186, 555, 1358, 1514
BmrI ACTGGG 4 cut(s) 164, 313, 683, 1822
BmsI GCATC 6 cut(s) 310, 972, 1168, 1212, 1615, 1886
BmuI ACTGGG 4 cut(s) 164, 313, 683, 1822
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 4 cut(s) 250, 282, 1450, 1482
BpuEI CTTGAG 2 cut(s) 252, 1706
BsaBI GATNNNNATC 1 cut(s) 1280
BsaI GGTCTC 1 cut(s) 1347
BsaJI CCNNGG 4 cut(s) 563, 1357, 1513, 1526
BsaXI ACNNNNNCTCC 2 cut(s) 1787, 1817
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 1513
Bse1I ACTGG 7 cut(s) 57, 159, 308, 689, 1587, 1739, 1817
Bse3DI GCAATG 1 cut(s) 945
Bse8I GATNNNNATC 1 cut(s) 1280
BseBI CCWGG 4 cut(s) 186, 555, 1358, 1514
BseDI CCNNGG 4 cut(s) 563, 1357, 1513, 1526
BseGI GGATG 3 cut(s) 313, 963, 1877
BseJI GATNNNNATC 1 cut(s) 1280
BseLI CCNNNNNNNGG 2 cut(s) 403, 1513
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 3 cut(s) 971, 1210, 1281
BseNI ACTGG 7 cut(s) 57, 159, 308, 689, 1587, 1739, 1817
BseYI CCCAGC 1 cut(s) 1049
BsgI GTGCAG 1 cut(s) 1848
Bsh1236I CGCG 1 cut(s) 985
BshFI GGCC 2 cut(s) 82, 366
BsiHKAI GWGCWC 1 cut(s) 33
BslFI GGGAC 2 cut(s) 172, 513
BslI CCNNNNNNNGG 2 cut(s) 403, 1513
BsmAI GTCTC 4 cut(s) 1342, 1347, 1693, 1888
BsmBI CGTCTC 2 cut(s) 1342, 1888
BsmFI GGGAC 2 cut(s) 172, 513
BsnI GGCC 2 cut(s) 82, 366
Bso31I GGTCTC 1 cut(s) 1347
Bsp1286I GDGCHC 2 cut(s) 33, 889
Bsp1407I TGTACA 1 cut(s) 1298
Bsp143I GATC 7 cut(s) 202, 571, 988, 1068, 1164, 1318, 1693
Bsp19I CCATGG 1 cut(s) 1526
BspACI CCGC 2 cut(s) 40, 1634
BspANI GGCC 2 cut(s) 82, 366
BspCNI CTCAG 3 cut(s) 970, 1209, 1280
BspFNI CGCG 1 cut(s) 985
BspLI GGNNCC 3 cut(s) 83, 943, 1085
BspMAI CTGCAG 4 cut(s) 670, 819, 955, 1578
BspMI ACCTGC 1 cut(s) 1870
BspPI GGATC 3 cut(s) 1063, 1326, 1701
BspTNI GGTCTC 1 cut(s) 1347
BsrDI GCAATG 1 cut(s) 945
BsrGI TGTACA 1 cut(s) 1298
BsrI ACTGG 7 cut(s) 57, 159, 308, 689, 1587, 1739, 1817
BssECI CCNNGG 4 cut(s) 563, 1357, 1513, 1526
BssMI GATC 7 cut(s) 202, 571, 988, 1068, 1164, 1318, 1693
BssT1I CCWWGG 1 cut(s) 1526
Bst2UI CCWGG 4 cut(s) 186, 555, 1358, 1514
Bst4CI ACNGT 3 cut(s) 68, 716, 1724
Bst6I CTCTTC 3 cut(s) 179, 495, 1891
BstAPI GCANNNNNTGC 1 cut(s) 1642
BstAUI TGTACA 1 cut(s) 1298
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 3 cut(s) 957, 1196, 1267
BstDSI CCRYGG 1 cut(s) 1526
BstF5I GGATG 3 cut(s) 313, 963, 1877
BstFNI CGCG 1 cut(s) 985
BstKTI GATC 7 cut(s) 205, 574, 991, 1071, 1167, 1321, 1696
BstMAI GTCTC 4 cut(s) 1342, 1347, 1693, 1888
BstMBI GATC 7 cut(s) 202, 571, 988, 1068, 1164, 1318, 1693
BstMWI GCNNNNNNNGC 5 cut(s) 643, 662, 950, 1642, 1712
BstNI CCWGG 4 cut(s) 186, 555, 1358, 1514
BstNSI RCATGY 5 cut(s) 431, 698, 1189, 1773, 1804
BstSCI CCNGG 4 cut(s) 184, 553, 1356, 1512
BstSFI CTRYAG 7 cut(s) 291, 666, 815, 825, 951, 1123, 1574
BstUI CGCG 1 cut(s) 985
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 988
BstYI RGATCY 1 cut(s) 988
BsuRI GGCC 2 cut(s) 82, 366
BtgI CCRYGG 1 cut(s) 1526
BtsCI GGATG 3 cut(s) 313, 963, 1877
BtsIMutI CAGTG 6 cut(s) 64, 696, 1024, 1729, 1732, 1810
BveI ACCTGC 1 cut(s) 1870
Cac8I GCNNGC 1 cut(s) 663
CaiI CAGNNNCTG 1 cut(s) 1049
Cfr13I GGNCC 2 cut(s) 81, 1665
CseI GACGC 1 cut(s) 441
Csp6I GTAC 2 cut(s) 481, 1299
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviQI GTAC 2 cut(s) 481, 1299
DdeI CTNAG 3 cut(s) 957, 1196, 1267
DpnI GATC 7 cut(s) 204, 573, 990, 1070, 1166, 1320, 1695
DpnII GATC 7 cut(s) 202, 571, 988, 1068, 1164, 1318, 1693
DraI TTTAAA 2 cut(s) 103, 1764
DraIII CACNNNGTG 1 cut(s) 691
Eam1104I CTCTTC 3 cut(s) 179, 495, 1891
EarI CTCTTC 3 cut(s) 179, 495, 1891
Eco130I CCWWGG 1 cut(s) 1526
Eco24I GRGCYC 1 cut(s) 889
Eco31I GGTCTC 1 cut(s) 1347
Eco47I GGWCC 1 cut(s) 1665
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 4 cut(s) 184, 553, 1356, 1512
EcoT14I CCWWGG 1 cut(s) 1526
EcoT38I GRGCYC 1 cut(s) 889
ErhI CCWWGG 1 cut(s) 1526
Esp3I CGTCTC 2 cut(s) 1342, 1888
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 2 cut(s) 172, 513
FauNDI CATATG 2 cut(s) 901, 1407
FokI GGATG 3 cut(s) 320, 950, 1864
FriOI GRGCYC 1 cut(s) 889
GsaI CCCAGC 1 cut(s) 1053
HaeIII GGCC 2 cut(s) 82, 366
HgaI GACGC 1 cut(s) 441
HincII GTYRAC 2 cut(s) 249, 1149
HindII GTYRAC 2 cut(s) 249, 1149
HindIII AAGCTT 4 cut(s) 131, 542, 587, 868
HinfI GANTC 2 cut(s) 1077, 1396
HpaI GTTAAC 1 cut(s) 1149
HphI GGTGA 6 cut(s) 677, 718, 1448, 1460, 1829, 1848
Hpy166II GTNNAC 5 cut(s) 249, 738, 1063, 1149, 1567
Hpy188I TCNGA 8 cut(s) 202, 238, 319, 336, 758, 880, 960, 1698
Hpy188III TCNNGA 6 cut(s) 269, 618, 1081, 1198, 1417, 1893
Hpy8I GTNNAC 5 cut(s) 249, 738, 1063, 1149, 1567
Hpy99I CGWCG 1 cut(s) 1243
HpyAV CCTTC 7 cut(s) 72, 397, 758, 1051, 1427, 1599, 1669
HpyCH4III ACNGT 3 cut(s) 68, 716, 1724
HpyCH4IV ACGT 3 cut(s) 277, 800, 1500
HpyF10VI GCNNNNNNNGC 5 cut(s) 643, 662, 950, 1642, 1712
HpyF3I CTNAG 3 cut(s) 957, 1196, 1267
HpySE526I ACGT 3 cut(s) 277, 800, 1500
KspAI GTTAAC 1 cut(s) 1149
Kzo9I GATC 7 cut(s) 202, 571, 988, 1068, 1164, 1318, 1693
LmnI GCTCC 3 cut(s) 406, 825, 941
LweI GCATC 6 cut(s) 310, 972, 1168, 1212, 1615, 1886
MaeII ACGT 3 cut(s) 277, 800, 1500
MaeIII GTNAC 5 cut(s) 68, 706, 1541, 1730, 1854
MalI GATC 7 cut(s) 204, 573, 990, 1070, 1166, 1320, 1695
MboI GATC 7 cut(s) 202, 571, 988, 1068, 1164, 1318, 1693
MboII GAAGA 8 cut(s) 74, 87, 166, 169, 512, 518, 1878, 1881
MfeI CAATTG 1 cut(s) 1555
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 2 cut(s) 33, 889
MroXI GAANNNNTTC 1 cut(s) 1424
MseI TTAA 6 cut(s) 102, 371, 378, 1148, 1743, 1763
MslI CAYNNNNRTG 5 cut(s) 930, 968, 1326, 1687, 1815
MspA1I CMGCKG 4 cut(s) 612, 1046, 1309, 1481
MspR9I CCNGG 4 cut(s) 186, 555, 1358, 1514
MunI CAATTG 1 cut(s) 1555
MvaI CCWGG 4 cut(s) 186, 555, 1358, 1514
MvnI CGCG 1 cut(s) 985
MwoI GCNNNNNNNGC 5 cut(s) 643, 662, 950, 1642, 1712
NcoI CCATGG 1 cut(s) 1526
NdeI CATATG 2 cut(s) 901, 1407
NdeII GATC 7 cut(s) 202, 571, 988, 1068, 1164, 1318, 1693
NlaIV GGNNCC 3 cut(s) 83, 943, 1085
NmeAIII GCCGAG 1 cut(s) 544
NmuCI GTSAC 4 cut(s) 706, 1541, 1730, 1854
NspI RCATGY 5 cut(s) 431, 698, 1189, 1773, 1804
OliI CACNNNNGTG 2 cut(s) 1687, 1815
PaqCI CACCTGC 1 cut(s) 1870
PdmI GAANNNNTTC 1 cut(s) 1424
PfeI GAWTC 2 cut(s) 1077, 1396
PflMI CCANNNNNTGG 1 cut(s) 1513
Psp6I CCWGG 4 cut(s) 184, 553, 1356, 1512
PspFI CCCAGC 1 cut(s) 1049
PspGI CCWGG 4 cut(s) 184, 553, 1356, 1512
PspN4I GGNNCC 3 cut(s) 83, 943, 1085
PspPI GGNCC 2 cut(s) 81, 1665
PsrI GAACNNNNNNTAC 2 cut(s) 961, 993
PstI CTGCAG 4 cut(s) 670, 819, 955, 1578
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 1 cut(s) 988
PvuII CAGCTG 4 cut(s) 612, 1046, 1309, 1481
RsaI GTAC 2 cut(s) 482, 1300
RsaNI GTAC 2 cut(s) 481, 1299
RseI CAYNNNNRTG 5 cut(s) 930, 968, 1326, 1687, 1815
SaqAI TTAA 6 cut(s) 102, 371, 378, 1148, 1743, 1763
Sau3AI GATC 7 cut(s) 202, 571, 988, 1068, 1164, 1318, 1693
Sau96I GGNCC 2 cut(s) 81, 1665
ScrFI CCNGG 4 cut(s) 186, 555, 1358, 1514
SduI GDGCHC 2 cut(s) 33, 889
SfaNI GCATC 6 cut(s) 310, 972, 1168, 1212, 1615, 1886
SfcI CTRYAG 7 cut(s) 291, 666, 815, 825, 951, 1123, 1574
SinI GGWCC 1 cut(s) 1665
SmiMI CAYNNNNRTG 5 cut(s) 930, 968, 1326, 1687, 1815
SmlI CTYRAG 2 cut(s) 267, 1685
SmoI CTYRAG 2 cut(s) 267, 1685
SsiI CCGC 2 cut(s) 40, 1634
StyD4I CCNGG 4 cut(s) 184, 553, 1356, 1512
StyI CCWWGG 1 cut(s) 1526
TaaI ACNGT 3 cut(s) 68, 716, 1724
TaiI ACGT 3 cut(s) 280, 803, 1503
TaqI TCGA 2 cut(s) 1284, 1776
TaqII GACCGA 1 cut(s) 1653
TatI WGTACW 1 cut(s) 1298
TauI GCSGC 1 cut(s) 1636
TfiI GAWTC 2 cut(s) 1077, 1396
Tru1I TTAA 6 cut(s) 102, 371, 378, 1148, 1743, 1763
Tru9I TTAA 6 cut(s) 102, 371, 378, 1148, 1743, 1763
TscAI CASTG 6 cut(s) 64, 696, 1024, 1729, 1739, 1817
TseFI GTSAC 4 cut(s) 706, 1541, 1730, 1854
Tsp45I GTSAC 4 cut(s) 706, 1541, 1730, 1854
TspGWI ACGGA 7 cut(s) 208, 353, 956, 1124, 1529, 1847, 1870
TspRI CASTG 6 cut(s) 64, 696, 1024, 1729, 1739, 1817
Van91I CCANNNNNTGG 1 cut(s) 1513
VpaK11BI GGWCC 1 cut(s) 1665
XapI RAATTY 6 cut(s) 232, 312, 509, 549, 730, 1130
XceI RCATGY 5 cut(s) 431, 698, 1189, 1773, 1804
XmnI GAANNNNTTC 1 cut(s) 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.