Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0018514

Physical Location & Seq

Genomic Coordinates Forward (+)

2170269 .. 2172291

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01810.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTGCAGTGCTGGAATAATGACATTTTGGGTTCATGGCCTTCTGAAGATGTGTTCAAAATGTCCTGATCTTCAAAACAAGCTATTATGGGCCGAATTTGGAGGATATCTGAGACTAAAACGTGGCTTGGAAGAAGAGACCTATGTTTTAGGGGTTGTGCAAGCATCTATACAACAATATTCTTATATTCTTGCAAGTATTTTGAATATTTTTATTCCTACTTTTGTAGGTGGTAAAAATCATATCTTAGGCCTCGCAGTTAAGCCCGCGGCCAAGCTCCAGATTGATCTTAGACATATTCAGCCAAACCGACAGTTGATCCCCATACCGAATATGATGATAGACTCACAAGTTGTTGGTAAGGAATTTTGTTTGAAAGATTTAATGCTCGAGCTTGAGGTTTTCCCTGTTAGGATGCCACGTGTTGGCGTCATATTAATAGTATATGTTAGTCGTAATAGTTTTCTCTGTAATACAAGTTCATGTGCAATTGAGAAAGAAGTGGAGTTGGGTTCTAACATTCCTCAACTGTGGTGCTTGACCTACTCCATTGCATTGCGTAGTAATATAAGCACCACACAGATAAGACTGACAAACTTGGAGATTAAGGCTTGTATAAAGCAATCTAAAGACAGAAATTTATATGCAATTGTTAGAAAATATGTATTGAAAGATTATGGAAAAAGAAAAAAAATCGTCAAACAAGTTGGAGATCGATCGATCTGGCTTTTTCAAATCATTGGTAGCGTAAATGAAAGATTATATATATATATATATATTGATGAAGATAAAAGTAAAAATATCAAACAAAGGAGGTGTCTCAACATCTTTTTTGGCGTCCTTGAAAATTTGACACTTCACTCCATAAGAGGTACGTGTAGAATTGTCCATGAATTGTTAATTGACCTGGCATGCATATACATAGGCCACAAGAATCATAACAAGTCTGATTCTAGGATACATGCATGTTTTTTTGTGAAATATATGTCGATCAGTTATACATATATGCAGTTTAATTTAAACAACGAATTATCGGTGTTTCCAATTCCTTCTTCTGGAAAGAGAGACATCTTTACTATCTGTATGATCTATAAAGGAGAAGTTCCTATAAATATTTATATGGTTCTTGATGGGTTTGCAAGTTGCTTGCTAAGATCAAAACCTGGGAATTGCTTAGGTGTTTTGGACAAGAATTCCATGAACAAATTAAAGCAACTACAATATTGTTTGAAGCGGTGTTTTGATTTAGTGTTCCATTTGCACAAAATGGATATAATTAATGTTATTTGTGTTACACTAAAAAGAAACAATTTCAGGCTGTTAATTGGTACTAGCAAAGAAGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

450

Amino Acids

51.59

Weight (kDa)

9.41

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018514)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214300.v1.1
pyrus_communis	pycom01g04230 pycom05g01800 pycom05g01810 pycom06g06990 pycom08g13800 pycom13g26040 pycom17g17910 pycom520g01200 pycom808g00540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccII	CGCG	1 cut(s)	269
AciI	CCGC	3 cut(s)	267, 269, 1234
AclWI	GGATC	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	5 cut(s)	95, 365, 637, 847, 1192
AcuI	CTGAAG	1 cut(s)	65
AcvI	CACGTG	1 cut(s)	422
AcyI	GRCGYC	2 cut(s)	429, 837
AfaI	GTAC	2 cut(s)	874, 1330
AfiI	CCNNNNNNNGG	2 cut(s)	425, 1055
AflIII	ACRYGT	2 cut(s)	421, 875
AgsI	TTSAA	8 cut(s)	57, 74, 205, 376, 670, 734, 845, 1231
AjnI	CCWGG	2 cut(s)	906, 1162
AjuI	GAANNNNNNNTTGG	2 cut(s)	1036, 1068
AluBI	AGCT	3 cut(s)	82, 277, 394
AluI	AGCT	3 cut(s)	82, 277, 394
Alw26I	GTCTC	4 cut(s)	106, 131, 824, 1059
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	5 cut(s)	37, 90, 250, 270, 925
ApoI	RAATTY	5 cut(s)	95, 365, 637, 847, 1192
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
AseI	ATTAAT	2 cut(s)	437, 1278
AspS9I	GGNCC	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	389
BbrPI	CACGTG	1 cut(s)	422
BccI	CCATC	1 cut(s)	1124
BciT130I	CCWGG	2 cut(s)	908, 1164
BciVI	GTATCC	1 cut(s)	951
BcoDI	GTCTC	4 cut(s)	106, 131, 824, 1059
BfaI	CTAG	2 cut(s)	954, 1332
BfuI	GTATCC	1 cut(s)	951
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	908, 1164
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	908, 1164
BmsI	GCATC	2 cut(s)	173, 405
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	1174
BpuEI	CTTGAG	1 cut(s)	416
Bsa29I	ATCGAT	2 cut(s)	715, 719
BsaAI	YACGTR	2 cut(s)	422, 876
BsaHI	GRCGYC	2 cut(s)	429, 837
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	267, 1163
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 1055
Bse3DI	GCAATG	2 cut(s)	549, 554
BseBI	CCWGG	2 cut(s)	908, 1164
BseCI	ATCGAT	2 cut(s)	715, 719
BseDI	CCNNGG	2 cut(s)	267, 1163
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	425, 1055
BseMI	GCAATG	2 cut(s)	549, 554
BseMII	CTCAG	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	719
BshFI	GGCC	5 cut(s)	39, 92, 252, 272, 927
BshVI	ATCGAT	2 cut(s)	715, 719
BsiEI	CGRYCG	1 cut(s)	719
BsiHKCI	CYCGRG	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	425, 1055
BsmAI	GTCTC	4 cut(s)	106, 131, 824, 1059
BsnI	GGCC	5 cut(s)	39, 92, 252, 272, 927
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	9 cut(s)	67, 286, 318, 712, 716, 720, 990, 1086, 1154
BspACI	CCGC	3 cut(s)	267, 269, 1234
BspANI	GGCC	5 cut(s)	39, 92, 252, 272, 927
BspCNI	CTCAG	1 cut(s)	102
BspDI	ATCGAT	2 cut(s)	715, 719
BspFNI	CGCG	1 cut(s)	269
BspPI	GGATC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	2 cut(s)	549, 554
BssECI	CCNNGG	2 cut(s)	267, 1163
BssMI	GATC	9 cut(s)	67, 286, 318, 712, 716, 720, 990, 1086, 1154
BssNI	GRCGYC	2 cut(s)	429, 837
Bst2UI	CCWGG	2 cut(s)	908, 1164
Bst4CI	ACNGT	2 cut(s)	315, 531
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	2 cut(s)	429, 837
BstBAI	YACGTR	2 cut(s)	422, 876
BstC8I	GCNNGC	4 cut(s)	162, 267, 913, 1148
BstDEI	CTNAG	5 cut(s)	110, 247, 290, 1151, 1174
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	9 cut(s)	70, 289, 321, 715, 719, 723, 993, 1089, 1157
BstMAI	GTCTC	4 cut(s)	106, 131, 824, 1059
BstMBI	GATC	9 cut(s)	67, 286, 318, 712, 716, 720, 990, 1086, 1154
BstMCI	CGRYCG	1 cut(s)	719
BstMWI	GCNNNNNNNGC	1 cut(s)	1341
BstNI	CCWGG	2 cut(s)	908, 1164
BstNSI	RCATGY	3 cut(s)	915, 965, 969
BstSCI	CCNGG	2 cut(s)	906, 1162
BstUI	CGCG	1 cut(s)	269
Bsu15I	ATCGAT	2 cut(s)	715, 719
BsuI	GTATCC	1 cut(s)	951
BsuRI	GGCC	5 cut(s)	39, 92, 252, 272, 927
BsuTUI	ATCGAT	2 cut(s)	715, 719
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	4 cut(s)	162, 267, 913, 1148
Cfr13I	GGNCC	1 cut(s)	90
Cfr42I	CCGCGG	1 cut(s)	270
ClaI	ATCGAT	2 cut(s)	715, 719
CseI	GACGC	2 cut(s)	418, 826
Csp6I	GTAC	2 cut(s)	873, 1329
CviAII	CATG	7 cut(s)	35, 483, 890, 912, 962, 966, 1198
CviQI	GTAC	2 cut(s)	873, 1329
DdeI	CTNAG	5 cut(s)	110, 247, 290, 1151, 1174
DpnI	GATC	9 cut(s)	69, 288, 320, 714, 718, 722, 992, 1088, 1156
DpnII	GATC	9 cut(s)	67, 286, 318, 712, 716, 720, 990, 1086, 1154
DraI	TTTAAA	1 cut(s)	1020
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	65
Eco72I	CACGTG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	1192
EcoRII	CCWGG	2 cut(s)	906, 1162
EcoRV	GATATC	1 cut(s)	107
EcoT22I	ATGCAT	2 cut(s)	917, 967
FaeI	CATG	7 cut(s)	38, 486, 893, 915, 965, 969, 1201
FatI	CATG	7 cut(s)	34, 482, 889, 911, 961, 965, 1197
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	954, 1332
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	5 cut(s)	39, 92, 252, 272, 927
HgaI	GACGC	2 cut(s)	418, 826
Hin1I	GRCGYC	2 cut(s)	429, 837
Hin1II	CATG	7 cut(s)	38, 486, 893, 915, 965, 969, 1201
HinfI	GANTC	3 cut(s)	344, 934, 950
Hpy188I	TCNGA	3 cut(s)	45, 111, 949
Hpy188III	TCNNGA	4 cut(s)	65, 280, 1056, 1127
HpyAV	CCTTC	3 cut(s)	50, 1059, 1334
HpyCH4III	ACNGT	2 cut(s)	315, 531
HpyCH4IV	ACGT	3 cut(s)	121, 421, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1341
HpyF3I	CTNAG	5 cut(s)	110, 247, 290, 1151, 1174
HpySE526I	ACGT	3 cut(s)	121, 421, 875
Hsp92I	GRCGYC	2 cut(s)	429, 837
Hsp92II	CATG	7 cut(s)	38, 486, 893, 915, 965, 969, 1201
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	9 cut(s)	67, 286, 318, 712, 716, 720, 990, 1086, 1154
LmnI	GCTCC	1 cut(s)	282
LweI	GCATC	2 cut(s)	173, 405
MaeI	CTAG	2 cut(s)	954, 1332
MaeII	ACGT	3 cut(s)	121, 421, 875
MaeIII	GTNAC	1 cut(s)	1291
MalI	GATC	9 cut(s)	69, 288, 320, 714, 718, 722, 992, 1088, 1156
MboI	GATC	9 cut(s)	67, 286, 318, 712, 716, 720, 990, 1086, 1154
MboII	GAAGA	6 cut(s)	58, 62, 143, 146, 797, 1044
MfeI	CAATTG	2 cut(s)	489, 648
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	6 cut(s)	95, 263, 391, 534, 807, 863
Mph1103I	ATGCAT	2 cut(s)	917, 967
MspA1I	CMGCKG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	908, 1164
MunI	CAATTG	2 cut(s)	489, 648
MvaI	CCWGG	2 cut(s)	908, 1164
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	1341
NdeII	GATC	9 cut(s)	67, 286, 318, 712, 716, 720, 990, 1086, 1154
NlaIII	CATG	7 cut(s)	38, 486, 893, 915, 965, 969, 1201
NsiI	ATGCAT	2 cut(s)	917, 967
NspI	RCATGY	3 cut(s)	915, 965, 969
PaeI	GCATGC	1 cut(s)	915
PaeR7I	CTCGAG	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	934, 950
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	271
Ple19I	CGATCG	1 cut(s)	719
PleI	GAGTC	1 cut(s)	338
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	2 cut(s)	422, 876
PshBI	ATTAAT	2 cut(s)	437, 1278
Psp6I	CCWGG	2 cut(s)	906, 1162
PspCI	CACGTG	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	906, 1162
PspPI	GGNCC	1 cut(s)	90
PspXI	VCTCGAGB	1 cut(s)	389
PsrI	GAACNNNNNNTAC	2 cut(s)	463, 495
PvuI	CGATCG	1 cut(s)	719
RsaI	GTAC	2 cut(s)	874, 1330
RsaNI	GTAC	2 cut(s)	873, 1329
SacII	CCGCGG	1 cut(s)	270
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	9 cut(s)	67, 286, 318, 712, 716, 720, 990, 1086, 1154
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	908, 1164
SfaNI	GCATC	2 cut(s)	173, 405
Sfr274I	CTCGAG	1 cut(s)	389
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	389, 395
SmoI	CTYRAG	2 cut(s)	389, 395
SphI	GCATGC	1 cut(s)	915
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	3 cut(s)	267, 269, 1234
SspI	AATATT	4 cut(s)	179, 208, 1114, 1223
SspMI	CTAG	2 cut(s)	954, 1332
StuI	AGGCCT	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	906, 1162
TaaI	ACNGT	2 cut(s)	315, 531
TaiI	ACGT	3 cut(s)	124, 424, 878
TaqI	TCGA	4 cut(s)	390, 715, 719, 989
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	934, 950
TscAI	CASTG	1 cut(s)	13
TspDTI	ATGAA	6 cut(s)	23, 471, 768, 798, 906, 1214
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	425
VspI	ATTAAT	2 cut(s)	437, 1278
XapI	RAATTY	5 cut(s)	95, 365, 637, 847, 1192
XceI	RCATGY	3 cut(s)	915, 965, 969
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	2 cut(s)	954, 1332
Zsp2I	ATGCAT	2 cut(s)	917, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.