Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000808

Orthogroup ID

OG0018514

Physical Location & Seq

Genomic Coordinates Forward (+)

350276 .. 351648

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom808g00540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGATGCTAGAGATTTAGATTCAGTAAACCTTAGTGATGAGAAGTCCGTGGAGATTATAATGGGAACAGAACGATCGATCTTGGAAGCGAAAGTAAGCGAAAATATACTTAAAAGAAAAATGCGTTTTTTTGTTTTGGATGTGACAATATGGTATATATATACTTATTTAGTATTATGTTTTTCATTTGATTATTTATTGTACCTGTTAATATTATCGGGTCAATTTTGGGTTAGGTCATTTTACTCGTTTATTTTAACGGGTGAAAAACACGACACGAATGCCAGGTCTAATGAGTCAATTTTATATTATATATTTAACCCTATTCTTAGTATATTTTGGTTGATATTTTGGAAGAATTTTGATACTTTAAATTATATTTCTAATATAGGACATTCAACTTCCTCTGAAGTAAAATGTGGCCAAATGGATGAATTTTGGAGTAATTCTAGTTGGAGGACATTCGTGATTCACTTGAGTGATGTTTTGGGCTTGACTTGCGTTTTTGGAGCCCAAGATGACCTCGGATGGTTTCATGGCCTTCTGGAGATGTGTTCAAAACGTCCTGATCTTCAAAATAAGCAATTATGGGCCGGATTTGGAGGAGATCTGAGGCTAAAACGTGGCTGGATAAGTACTTGGCAGATTCTCCTAGGTTTGTGTGATGGCTTAGCAAATATATTGCTTTTGCCGTTCTTAGTTTTGGTTACACTTTCTTTTATATTTTCTACTTTAAGGTGTTTTCATTCCTTTTATTCCAATAATATTTTCTATAATTTTCATTATGAATATGCACACTTTGAATTATTAATTACCGTGATTAAAACTATCCAATTGCAATTTTGGTCGGAAGGTTCCCTGAAATTGGCGCTGGCTTCTTGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

296

Amino Acids

34.47

Weight (kDa)

5.64

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018514)

Species	Orthologous Gene IDs
malus_domestica	MD11G1214300.v1.1
pyrus_communis	pycom01g04230 pycom05g01800 pycom05g01810 pycom06g06990 pycom08g13800 pycom13g26040 pycom17g17910 pycom520g01200 pycom808g00540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	358, 434
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	203, 637
AfiI	CCNNNNNNNGG	1 cut(s)	865
AgsI	TTSAA	4 cut(s)	399, 558, 575, 803
AjnI	CCWGG	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AleI	CACNNNNGTG	1 cut(s)	477
AoxI	GGCC	3 cut(s)	421, 538, 591
ApoI	RAATTY	2 cut(s)	358, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AseI	ATTAAT	1 cut(s)	809
AspA2I	CCTAGG	1 cut(s)	652
AspLEI	GCGC	1 cut(s)	871
AspS9I	GGNCC	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	275
AvrII	CCTAGG	1 cut(s)	652
BalI	TGGCCA	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	514
BccI	CCATC	2 cut(s)	522, 659
BceAI	ACGGC	1 cut(s)	676
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	286
BfaI	CTAG	3 cut(s)	9, 450, 653
BfoI	RGCGCY	1 cut(s)	872
BglII	AGATCT	1 cut(s)	607
BlnI	CCTAGG	1 cut(s)	652
BlpI	GCTNAGC	1 cut(s)	670
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	2 cut(s)	511, 856
BmrFI	CCNGG	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	566
Bpu1102I	GCTNAGC	1 cut(s)	670
BpuEI	CTTGAG	1 cut(s)	496
Bsa29I	ATCGAT	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	48, 523, 652
Bsc4I	CCNNNNNNNGG	1 cut(s)	865
BseBI	CCWGG	1 cut(s)	286
BseCI	ATCGAT	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	48, 523, 652
BseGI	GGATG	4 cut(s)	10, 145, 436, 533
BseLI	CCNNNNNNNGG	1 cut(s)	865
BseMII	CTCAG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	3 cut(s)	423, 540, 593
BshVI	ATCGAT	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	865
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	3 cut(s)	423, 540, 593
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	4 cut(s)	74, 78, 568, 607
Bsp1720I	GCTNAGC	1 cut(s)	670
BspANI	GGCC	3 cut(s)	423, 540, 593
BspCNI	CTCAG	1 cut(s)	603
BspDI	ATCGAT	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	511, 856
BssECI	CCNNGG	3 cut(s)	48, 523, 652
BssMI	GATC	4 cut(s)	74, 78, 568, 607
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	817
BstC8I	GCNNGC	1 cut(s)	873
BstDEI	CTNAG	5 cut(s)	32, 329, 611, 670, 697
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	4 cut(s)	10, 145, 436, 533
BstH2I	RGCGCY	1 cut(s)	872
BstHHI	GCGC	1 cut(s)	871
BstKTI	GATC	4 cut(s)	77, 81, 571, 610
BstMBI	GATC	4 cut(s)	74, 78, 568, 607
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	423, 540, 593
BsuTUI	ATCGAT	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	4 cut(s)	10, 145, 436, 533
Cac8I	GCNNGC	1 cut(s)	873
CfoI	GCGC	1 cut(s)	871
Cfr13I	GGNCC	1 cut(s)	591
ClaI	ATCGAT	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	202, 636
CviAII	CATG	1 cut(s)	536
CviJI	RGCY	9 cut(s)	423, 492, 512, 540, 593, 616, 627, 669, 875
CviKI_1	RGCY	9 cut(s)	423, 492, 512, 540, 593, 616, 627, 669, 875
CviQI	GTAC	2 cut(s)	202, 636
DdeI	CTNAG	5 cut(s)	32, 329, 611, 670, 697
DpnI	GATC	4 cut(s)	76, 80, 570, 609
DpnII	GATC	4 cut(s)	74, 78, 568, 607
DraI	TTTAAA	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	421
Eco130I	CCWWGG	1 cut(s)	652
Eco24I	GRGCYC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	1 cut(s)	539
FatI	CATG	1 cut(s)	535
FokI	GGATG	4 cut(s)	17, 152, 443, 540
FriOI	GRGCYC	1 cut(s)	514
FspBI	CTAG	3 cut(s)	9, 450, 653
GlaI	GCGC	1 cut(s)	870
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	1 cut(s)	872
HaeIII	GGCC	3 cut(s)	423, 540, 593
HapII	CCGG	1 cut(s)	594
HhaI	GCGC	1 cut(s)	871
Hin1II	CATG	1 cut(s)	539
Hin6I	GCGC	1 cut(s)	869
HinP1I	GCGC	1 cut(s)	869
HinfI	GANTC	4 cut(s)	20, 296, 469, 646
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	409, 527, 612, 850
Hpy188III	TCNNGA	3 cut(s)	466, 545, 566
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	551, 845
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	2 cut(s)	562, 622
HpyCH4V	TGCA	2 cut(s)	794, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	5 cut(s)	32, 329, 611, 670, 697
HpySE526I	ACGT	2 cut(s)	562, 622
Hsp92II	CATG	1 cut(s)	539
HspAI	GCGC	1 cut(s)	869
Kzo9I	GATC	4 cut(s)	74, 78, 568, 607
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	9 cut(s)	218, 271, 298, 530, 579, 607, 613, 857, 872
MaeI	CTAG	3 cut(s)	9, 450, 653
MaeII	ACGT	2 cut(s)	562, 622
MaeIII	GTNAC	2 cut(s)	142, 706
MalI	GATC	4 cut(s)	76, 80, 570, 609
MboI	GATC	4 cut(s)	74, 78, 568, 607
MboII	GAAGA	2 cut(s)	367, 563
MfeI	CAATTG	1 cut(s)	833
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	423
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	434, 828
MnlI	CCTC	5 cut(s)	415, 450, 533, 596, 606
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	9 cut(s)	111, 209, 257, 318, 371, 734, 809, 822, 886
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	286
MunI	CAATTG	1 cut(s)	833
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	498
NdeII	GATC	4 cut(s)	74, 78, 568, 607
NlaIII	CATG	1 cut(s)	539
NlaIV	GGNNCC	2 cut(s)	511, 856
NmuCI	GTSAC	1 cut(s)	142
OliI	CACNNNNGTG	1 cut(s)	477
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	20, 469, 646
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	809
PsiI	TTATAA	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	511, 856
PspPI	GGNCC	1 cut(s)	591
PsuI	RGATCY	1 cut(s)	607
PvuI	CGATCG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	203, 637
RsaNI	GTAC	2 cut(s)	202, 636
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	9 cut(s)	111, 209, 257, 318, 371, 734, 809, 822, 886
Sau3AI	GATC	4 cut(s)	74, 78, 568, 607
Sau96I	GGNCC	1 cut(s)	591
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
SspI	AATATT	2 cut(s)	213, 766
SspMI	CTAG	3 cut(s)	9, 450, 653
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	2 cut(s)	565, 625
TaqI	TCGA	1 cut(s)	77
TatI	WGTACW	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	20, 469, 646
Tru1I	TTAA	9 cut(s)	111, 209, 257, 318, 371, 734, 809, 822, 886
Tru9I	TTAA	9 cut(s)	111, 209, 257, 318, 371, 734, 809, 822, 886
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	6 cut(s)	174, 447, 524, 734, 770, 801
TspGWI	ACGGA	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	809
XapI	RAATTY	2 cut(s)	358, 434
XmaJI	CCTAGG	1 cut(s)	652
XspI	CTAG	3 cut(s)	9, 450, 653
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.