pycom08g13800

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
12649599 .. 12649832
234 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g13800.1

Sequence Viewer

Length: 234 bp
ATGGCGTCTTCAAGTAAGAAGTCCAAATTGGTCGAGGTTTCTGATGAGTATATTTTATATTATATATTTAACCCTATTCTTAGTATATTTTGGTTAATAATTTGGAAGAATTTTGATACTTTGAATTATATTTCCAATATAGGATTTTCGACTTCCTCTGGAGCAAAAGATGGTCAAATGGACGAATTTTGGAGTAATTCCAATTGGAGGACGTTCGTGAGTCACTTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.95

Weight (kDa)

5.59

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 109, 185
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 2 cut(s) 12, 124
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
ApoI RAATTY 2 cut(s) 109, 185
BccI CCATC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 207
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 80, 226
CviJI RGCY 1 cut(s) 230
CviKI_1 RGCY 1 cut(s) 230
DdeI CTNAG 2 cut(s) 80, 226
FaiI YATR 7 cut(s) 51, 58, 63, 65, 86, 129, 140
GsuI CTGGAG 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 159, 217
HpyCH4IV ACGT 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 80, 226
HpySE526I ACGT 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 1 cut(s) 144
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 221
MboII GAAGA 1 cut(s) 118
MfeI CAATTG 1 cut(s) 202
MluCI AATT 7 cut(s) 26, 99, 109, 124, 185, 196, 202
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 3 cut(s) 28, 166, 201
MseI TTAA 2 cut(s) 69, 95
MunI CAATTG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 221
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 69, 95
SchI GAGTC 1 cut(s) 229
SetI ASST 3 cut(s) 39, 215, 232
SgeI CNNG 4 cut(s) 24, 46, 171, 229
Sse9I AATT 7 cut(s) 26, 99, 109, 124, 185, 196, 202
TaiI ACGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 33, 149
TasI AATT 7 cut(s) 26, 99, 109, 124, 185, 196, 202
Tru1I TTAA 2 cut(s) 69, 95
Tru9I TTAA 2 cut(s) 69, 95
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
XapI RAATTY 2 cut(s) 109, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.