pycom05g04070
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
4706459 .. 4715321
8863 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04070.14

Sequence Viewer

Length: 1458 bp
ATGTCATACATCAAAATTCCAACTTGTTTAATTCTTGCTGTTACAGCAGCAAATTCTGACTTAGCAAACTCAGATGCTCTTCAGATTGCAGGAAATGCTGATCCTGATGGTCTACGAACCATAGGAGTAATCACAAAGTTGGATATAATGGATAGAGGTACTGATGCCCGTAATCTGTTGCTTGGAAAAGTGATTCCCCTGAGACTTGGTTATGTAGGTGTTGTGAATCGTAGTCAGGAGGATATTATGATGAACCGAAGTATTAAGGATGCTCTTGTGGCTGAGGAGAAATTTTTCCGCAGCCGCCCAGTATATAATGGTCTAGCTGACCGCTGTGGCGTCCCTCAGTTGGCAAAGAAGTTGAACCAGATTCTGGTGCAACATATTAAGGCTGTACTTCCGGGGCTCAAATCACGCATAAGCTCTACACTAGTTACTGTTGCCAAGGAGCACGCCAGTTACGGGGAAATCACAGAATCAAAGGCTGGTCAGGGAGCTCTACTTCTTAACATTCTTTCAAAGTATTCTGAAGCATTTTCTACAATGGTCGAGGGGAAAAATGAAGAAATGTCAACAACTGAGCTTTCTGGTGGAGCGCGAATTCACTATATTTTTCAAAATATCTTTGTGAAGAGTTTGGAGGAGGTGGATCCATGTGAGGATCTTACAGATGATGACATTCGAACTGCCATTCAAAATGCCACCGGTCCTAGATCTGCATTATTTGTACCAGAAGTTCCGTTTGAAAATCTTGTCCGGAGGCAAATAGCTCGCTTGTTAGATCCAAGCCTTCAGTGCGCTAGGTTCATATATGACGAGTTGATGAAGATTAGCCATCGCTGCCTAGTAAGTGAATTGCAGCGATTCCCTATTCTAAGAAAGCGGATGGATGAAGTCATAGGGAACTTCCTGCGGGAAGGCCTTGAACCCTCTGAGACAATGATTGGGCATATTATTGAGATGGAGATGGACTACATCAATACTTCACATGCAAATTTTGTTGGTGGGAGTAAGGCTGTGGAGGTTGCATTGCAACAGGTGAAATCATCTCGGATACCACTGCCTCTTTCAAGGCAAAAGGATGGTGTAGATTCTGATAAGGCACCAACATCTGAAAGAAGTTTGAAATCTAGAGCAATTCTTGCCAGACCAGTAAATGGATTCGTGCCTGAACAGGGTGCACGACCTGTGGCAGACAATGAAAAAGTTGCATCATCTGGGAATATATTAGGAGGTTCAACTGGTTCAAGTTGGGGGATTTCTTCAATTTTTGGTGGGAATGATAACCGCACACCAGCTAAAGAGAGCTTAATAAACAAGCCATATAATGAACCTATTAACAACATTGAACAAGCAGTCTCAATGATCCATTTAAGCGAGCCCCCAACTATATTGAGGCCCACAGAGAGCCACTCAGAGCAGGAGACAATTGAAATTGCAGTCACAAAACTCCTATGA

Protein Analysis

486

Amino Acids

53.23

Weight (kDa)

6.01

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1102
AccB7I CCANNNNNTGG 2 cut(s) 373, 1157
AccI GTMKAC 1 cut(s) 112
AccII CGCG 1 cut(s) 598
AccIII TCCGGA 1 cut(s) 756
AciI CCGC 6 cut(s) 298, 304, 331, 883, 913, 1288
AclWI GGATC 6 cut(s) 95, 644, 657, 669, 776, 1360
AcsI RAATTY 5 cut(s) 15, 52, 290, 600, 994
AcuI CTGAAG 3 cut(s) 65, 549, 776
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 3 cut(s) 160, 396, 729
AfiI CCNNNNNNNGG 5 cut(s) 349, 373, 462, 1157, 1175
AgeI ACCGGT 1 cut(s) 704
AhlI ACTAGT 1 cut(s) 430
AluBI AGCT 7 cut(s) 326, 423, 497, 583, 770, 1298, 1308
AluI AGCT 7 cut(s) 326, 423, 497, 583, 770, 1298, 1308
Alw21I GWGCWC 3 cut(s) 453, 499, 1183
Alw26I GTCTC 4 cut(s) 196, 929, 1363, 1418
Alw44I GTGCAC 1 cut(s) 1179
AlwI GGATC 6 cut(s) 95, 644, 657, 669, 776, 1360
AlwNI CAGNNNCTG 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 756
AoxI GGCC 2 cut(s) 919, 1397
ApaLI GTGCAC 1 cut(s) 1179
ApeKI GCWGC 4 cut(s) 47, 300, 840, 859
ApoI RAATTY 5 cut(s) 15, 52, 290, 600, 994
AsiGI ACCGGT 1 cut(s) 704
Asp700I GAANNNNTTC 1 cut(s) 293
AspLEI GCGC 2 cut(s) 598, 800
AspS9I GGNCC 2 cut(s) 707, 1398
AsuC2I CCSGG 1 cut(s) 402
AsuHPI GGTGA 1 cut(s) 1051
AsuII TTCGAA 1 cut(s) 682
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 1183
BamHI GGATCC 1 cut(s) 649
BanI GGYRCC 1 cut(s) 1102
BanII GRGCYC 3 cut(s) 408, 499, 1383
Bbv12I GWGCWC 3 cut(s) 453, 499, 1183
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 4 cut(s) 59, 312, 827, 871
BccI CCATC 6 cut(s) 101, 843, 880, 955, 961, 1076
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciVI GTATCC 1 cut(s) 1047
BcnI CCSGG 1 cut(s) 402
BcoDI GTCTC 4 cut(s) 196, 929, 1363, 1418
BcuI ACTAGT 1 cut(s) 430
BfaI CTAG 6 cut(s) 323, 431, 711, 801, 845, 1131
BfuI GTATCC 1 cut(s) 1047
BglII AGATCT 1 cut(s) 713
BisI GCNGC 5 cut(s) 48, 301, 304, 841, 860
BlsI GCNGC 5 cut(s) 49, 302, 305, 842, 861
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 2 cut(s) 707, 1398
BmiI GGNNCC 2 cut(s) 651, 1104
BmrFI CCNGG 1 cut(s) 402
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 4 cut(s) 64, 154, 259, 1220
BmuI ACTGGG 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 1397, 1429
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 682
BpuMI CCSGG 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 401, 444
BsaWI WCCGGW 2 cut(s) 704, 756
Bsc4I CCNNNNNNNGG 5 cut(s) 349, 373, 462, 1157, 1175
Bse118I RCCGGY 1 cut(s) 704
Bse1I ACTGG 4 cut(s) 308, 456, 1151, 1246
Bse3DI GCAATG 1 cut(s) 1028
BseAI TCCGGA 1 cut(s) 756
BseDI CCNNGG 2 cut(s) 401, 444
BseGI GGATG 4 cut(s) 274, 891, 895, 1087
BseLI CCNNNNNNNGG 5 cut(s) 349, 373, 462, 1157, 1175
BseMI GCAATG 1 cut(s) 1028
BseMII CTCAG 7 cut(s) 84, 191, 273, 359, 570, 924, 1428
BseNI ACTGG 4 cut(s) 308, 456, 1151, 1246
BseRI GAGGAG 2 cut(s) 299, 656
BseSI GKGCMC 1 cut(s) 1183
BseXI GCAGC 4 cut(s) 59, 312, 827, 871
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 921, 1399
BshNI GGYRCC 1 cut(s) 1102
BshTI ACCGGT 1 cut(s) 704
BsiHKAI GWGCWC 3 cut(s) 453, 499, 1183
BsiSI CCGG 3 cut(s) 401, 705, 757
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 5 cut(s) 349, 373, 462, 1157, 1175
BsmAI GTCTC 4 cut(s) 196, 929, 1363, 1418
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 2 cut(s) 921, 1399
Bsp119I TTCGAA 1 cut(s) 682
Bsp1286I GDGCHC 5 cut(s) 408, 453, 499, 1183, 1383
Bsp13I TCCGGA 1 cut(s) 756
Bsp143I GATC 6 cut(s) 100, 649, 661, 713, 781, 1365
BspACI CCGC 6 cut(s) 298, 304, 331, 883, 913, 1288
BspANI GGCC 2 cut(s) 921, 1399
BspCNI CTCAG 7 cut(s) 83, 192, 274, 358, 571, 925, 1427
BspEI TCCGGA 1 cut(s) 756
BspFNI CGCG 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 651, 1104
BspPI GGATC 6 cut(s) 95, 644, 657, 669, 776, 1360
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 682
BspT107I GGYRCC 1 cut(s) 1102
BsrDI GCAATG 1 cut(s) 1028
BsrFI RCCGGY 1 cut(s) 704
BsrI ACTGG 4 cut(s) 308, 456, 1151, 1246
BssAI RCCGGY 1 cut(s) 704
BssECI CCNNGG 2 cut(s) 401, 444
BssMI GATC 6 cut(s) 100, 649, 661, 713, 781, 1365
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 2 cut(s) 84, 626
BstACI GRCGYC 1 cut(s) 339
BstAPI GCANNNNNTGC 2 cut(s) 95, 1142
BstBI TTCGAA 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 453, 772, 1379
BstDEI CTNAG 9 cut(s) 61, 70, 200, 282, 345, 579, 875, 933, 1414
BstF5I GGATG 4 cut(s) 274, 891, 895, 1087
BstFNI CGCG 1 cut(s) 598
BstHHI GCGC 2 cut(s) 598, 800
BstKTI GATC 6 cut(s) 103, 652, 664, 716, 784, 1368
BstMAI GTCTC 4 cut(s) 196, 929, 1363, 1418
BstMBI GATC 6 cut(s) 100, 649, 661, 713, 781, 1365
BstMWI GCNNNNNNNGC 6 cut(s) 44, 95, 278, 795, 840, 1142
BstNSI RCATGY 1 cut(s) 992
BstSCI CCNGG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 1183
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 4 cut(s) 59, 312, 827, 871
BstX2I RGATCY 4 cut(s) 649, 661, 713, 781
BstYI RGATCY 4 cut(s) 649, 661, 713, 781
BsuI GTATCC 1 cut(s) 1047
BsuRI GGCC 2 cut(s) 921, 1399
BtgZI GCGATG 1 cut(s) 821
BtsCI GGATG 4 cut(s) 274, 891, 895, 1087
BtsI GCAGTG 1 cut(s) 1058
BtsIMutI CAGTG 2 cut(s) 800, 1058
Cac8I GCNNGC 3 cut(s) 453, 772, 1379
CaiI CAGNNNCTG 1 cut(s) 373
CfoI GCGC 2 cut(s) 598, 800
Cfr10I RCCGGY 1 cut(s) 704
Cfr13I GGNCC 2 cut(s) 707, 1398
CseI GACGC 1 cut(s) 328
Csp6I GTAC 3 cut(s) 159, 395, 728
CspAI ACCGGT 1 cut(s) 704
CviAII CATG 2 cut(s) 654, 989
CviQI GTAC 3 cut(s) 159, 395, 728
DdeI CTNAG 9 cut(s) 61, 70, 200, 282, 345, 579, 875, 933, 1414
DpnI GATC 6 cut(s) 102, 651, 663, 715, 783, 1367
DpnII GATC 6 cut(s) 100, 649, 661, 713, 781, 1365
Eam1104I CTCTTC 2 cut(s) 84, 626
EarI CTCTTC 2 cut(s) 84, 626
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 444
Eco147I AGGCCT 1 cut(s) 921
Eco24I GRGCYC 3 cut(s) 408, 499, 1383
Eco47I GGWCC 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 3 cut(s) 65, 549, 776
EcoICRI GAGCTC 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 3 cut(s) 408, 499, 1383
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 2 cut(s) 657, 992
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 653, 988
FauI CCCGC 1 cut(s) 906
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 5 cut(s) 48, 301, 304, 841, 860
FokI GGATG 4 cut(s) 281, 898, 902, 1094
FriOI GRGCYC 3 cut(s) 408, 499, 1383
Fsp4HI GCNGC 5 cut(s) 48, 301, 304, 841, 860
FspBI CTAG 6 cut(s) 323, 431, 711, 801, 845, 1131
GlaI GCGC 2 cut(s) 597, 799
GluI GCNGC 5 cut(s) 48, 301, 304, 841, 860
HaeIII GGCC 2 cut(s) 921, 1399
HapII CCGG 3 cut(s) 401, 705, 757
HgaI GACGC 1 cut(s) 328
HhaI GCGC 2 cut(s) 598, 800
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 2 cut(s) 657, 992
Hin6I GCGC 2 cut(s) 596, 798
HinP1I GCGC 2 cut(s) 596, 798
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 7 cut(s) 193, 226, 370, 476, 864, 1091, 1161
HpaII CCGG 3 cut(s) 401, 705, 757
HphI GGTGA 1 cut(s) 1051
Hpy166II GTNNAC 3 cut(s) 113, 573, 1181
Hpy188I TCNGA 9 cut(s) 58, 73, 84, 529, 934, 1053, 1096, 1114, 1417
Hpy188III TCNNGA 4 cut(s) 104, 236, 757, 1131
Hpy8I GTNNAC 3 cut(s) 113, 573, 1181
HpyAV CCTTC 2 cut(s) 800, 911
HpyCH4III ACNGT 1 cut(s) 439
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 95, 278, 795, 840, 1142
HpyF3I CTNAG 9 cut(s) 61, 70, 200, 282, 345, 579, 875, 933, 1414
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 657, 992
HspAI GCGC 2 cut(s) 596, 798
Kpn2I TCCGGA 1 cut(s) 756
Kzo9I GATC 6 cut(s) 100, 649, 661, 713, 781, 1365
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 3 cut(s) 448, 494, 593
Lsp1109I GCAGC 4 cut(s) 59, 312, 827, 871
LweI GCATC 4 cut(s) 64, 154, 259, 1220
MaeI CTAG 6 cut(s) 323, 431, 711, 801, 845, 1131
MaeIII GTNAC 4 cut(s) 40, 433, 458, 1441
MalI GATC 6 cut(s) 102, 651, 663, 715, 783, 1367
MboI GATC 6 cut(s) 100, 649, 661, 713, 781, 1365
MboII GAAGA 5 cut(s) 71, 575, 643, 838, 1254
MfeI CAATTG 1 cut(s) 1428
MflI RGATCY 4 cut(s) 649, 661, 713, 781
MhlI GDGCHC 5 cut(s) 408, 453, 499, 1183, 1383
MmeI TCCRAC 2 cut(s) 44, 120
MroI TCCGGA 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 7 cut(s) 29, 264, 387, 507, 1310, 1338, 1373
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 3 cut(s) 401, 705, 757
MspR9I CCNGG 1 cut(s) 402
MunI CAATTG 1 cut(s) 1428
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 6 cut(s) 44, 95, 278, 795, 840, 1142
NciI CCSGG 1 cut(s) 402
NdeII GATC 6 cut(s) 100, 649, 661, 713, 781, 1365
NlaIII CATG 2 cut(s) 657, 992
NlaIV GGNNCC 2 cut(s) 651, 1104
NmuCI GTSAC 1 cut(s) 1441
NspI RCATGY 1 cut(s) 992
NspV TTCGAA 1 cut(s) 682
PceI AGGCCT 1 cut(s) 921
PciSI GCTCTTC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 7 cut(s) 193, 226, 370, 476, 864, 1091, 1161
PflMI CCANNNNNTGG 2 cut(s) 373, 1157
PinAI ACCGGT 1 cut(s) 704
PkrI GCNGC 5 cut(s) 49, 302, 305, 842, 861
Psp124BI GAGCTC 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 651, 1104
PspPI GGNCC 2 cut(s) 707, 1398
PsrI GAACNNNNNNTAC 2 cut(s) 720, 752
PstNI CAGNNNCTG 1 cut(s) 373
PsuI RGATCY 4 cut(s) 649, 661, 713, 781
RsaI GTAC 3 cut(s) 160, 396, 729
RsaNI GTAC 3 cut(s) 159, 395, 728
SacI GAGCTC 1 cut(s) 499
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 7 cut(s) 29, 264, 387, 507, 1310, 1338, 1373
SatI GCNGC 5 cut(s) 48, 301, 304, 841, 860
Sau3AI GATC 6 cut(s) 100, 649, 661, 713, 781, 1365
Sau96I GGNCC 2 cut(s) 707, 1398
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 5 cut(s) 408, 453, 499, 1183, 1383
SfaNI GCATC 4 cut(s) 64, 154, 259, 1220
SfuI TTCGAA 1 cut(s) 682
SinI GGWCC 1 cut(s) 707
SpeI ACTAGT 1 cut(s) 430
SseBI AGGCCT 1 cut(s) 921
SsiI CCGC 6 cut(s) 298, 304, 331, 883, 913, 1288
SspMI CTAG 6 cut(s) 323, 431, 711, 801, 845, 1131
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 921
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 439
TaqI TCGA 2 cut(s) 549, 682
TatI WGTACW 1 cut(s) 394
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 7 cut(s) 193, 226, 370, 476, 864, 1091, 1161
Tru1I TTAA 7 cut(s) 29, 264, 387, 507, 1310, 1338, 1373
Tru9I TTAA 7 cut(s) 29, 264, 387, 507, 1310, 1338, 1373
TscAI CASTG 2 cut(s) 800, 1065
TseFI GTSAC 1 cut(s) 1441
TseI GCWGC 4 cut(s) 47, 300, 840, 859
Tsp45I GTSAC 1 cut(s) 1441
TspDTI ATGAA 7 cut(s) 266, 576, 796, 839, 906, 1215, 1344
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 2 cut(s) 800, 1065
Van91I CCANNNNNTGG 2 cut(s) 373, 1157
VneI GTGCAC 1 cut(s) 1179
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 5 cut(s) 15, 52, 290, 600, 994
XbaI TCTAGA 1 cut(s) 1130
XceI RCATGY 1 cut(s) 992
XmiI GTMKAC 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 6 cut(s) 323, 431, 711, 801, 845, 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.