Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006045

Physical Location & Seq

Genomic Coordinates Reverse (-)

25381969 .. 25391548

Gene Structure 9580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG165800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGGCTGACGAGCCCTCAGTGGCACCAACGCAACCGCCTTCTCCTTCATCCTCCAATTCGCCCCTGGGAAACTCTGTGATCCCCATAGTGAACAAGCTCCAGGACATCTTCGCGCAGCTCGGTTCCCAATCCACCATCGAGCTCCCTCAGGTCGCCGTCGTCGGCAGCCAGAGTAGCGGCAAGTCCAGTGTGCTCGAGGCCCTTGTAGGCCGCGACTTCTTGCCCCGTGGCTCTGAAATCTGCACGCGCCGCCCTCTCGTGCTCCAGCTCTTACAGACTAAGCGCAACGCCGATGGCACCGATGAGGAGTACGGCGAGTTCCTTCACGTGCCTGGAAAGCGCTTCTACGATTTCTCAGATATTAGAAGGGAAATTCAGGCTGAGACTGAGAGGGAAGCAGGTGGAAACAAAGGTGTCACAGACAAGCAGATTCGTTTGAAGATATTTTCTCCAAATGTTCTTGATATCACACTGGTAGATCTACCTGGAATTACAAAGGTTCCCGTTGGTGACCAGCCCTCTGATATTGAAGCACGGATTAGGACAATGATCATGTCTTACATCAAAATTCCAAGTTGTTTAATTCTAGCTGTCACAGCAGCAAATTCGGATTTAGCAAATTCAGATGCTCTTCAGATTGCAGGGAATGCTGATCCTGATGGTCTCCGAACCATAGGAGTAGTCACAAAGCTGGATATTATGGATAGAGGTACTGATGCTCGTAATCTTTTGCTCGGAAAAGTTATCCCTCTACGACTAGGCTACATAGGTGTTGTGAATCGTAGTCAAGAGGATATTATATTGAACCGGAGTATCAAAGATGCACTTGTAGCTGAGGAAAAGTTTTTCCGTAGCCGCCCAGTATATAATGGTCTAGCTGATCGCTGCGGCATCCCTCAGTTGGCAAAGAAGTTGAATCAGATTCTAGTGCAACATATCAAGGCAGTACTCCCGGGGCTAAAATCACGCATAAGCTCTGCACTAGTTTCTGTTGCCAAGGAACATGCCAGTTATGGGGAAATCACAGAATCAAAGGCTGGTCAGGGAGCTCTTCTCCTTAACATTCTTTCAAAGTACTCAGAAGCATTTTCTACAATGGTCGAGGGTAAAAATGAAGAAATGTCAACAACTGAGCTGTCTGGCGGAGCACGAATTCACTATATCTTCCAGAATATCTTTGTGAAAAGTTTAGAGGAGGTGGATCCCTGTGAGGACCTAACAGATGATGACATTAGAACTGCCATTCAAAATGCGACGGGTCCTAAATCTGCGTTATTTGTACCAGAGGTGCCTTTTGAAAATCTGGTCAGGAGGCAAATAGCTCGTTTGTTAGATCCCAGCCTTCAATGTGCCAGGTTCATATATGATGAGCTGATGAAGATTAGCCATCGCTGCCTCGTAAATGAATTGCAGCGATTCCCTGTTTTGAGAAAGCGGATGGATGAAGTTATAGGGAACTTCTTACGAGAAGGCCTTGAACCCTCTGAGACAATGATTGGACATATTATTGAGATGGAGATGGACTACATAAATACTTCACATGCTAATTTTATTGGTGGAAGTAAGGCCGTTGAGAGTGCATTGCAACAGGTGAAGTCCTCTCGGATTCCTCTGCCTCTTTCTAGGCAAAAGGATGGTGTAGACTCTGACAAGGCACCATCATCTGAAAGAAGTTTGAAGTCCAGAGCAATTCTTGGCAGACAAGTGAATGGAATTTTGCCTGACCAGGGTGTTCGTCCTGTAGTAGATAGTGAAAAAGTTCCACCTGCTGGAGGCCCAAGTGTATCAACTTGGGGAATTTCATCTATTTTTGGAGGGAGTGATAACCGTACGCCTGCTAAAGAGACCTTAATAAACAAGCCGTATAATGAACCTATCCACCACATGGAACAAGCCATCTCTATGATCCATTTAAGAGAGCCCCCAACTGTCTTGAAGCCCACAGAAAACCACTCAGAGCAGGAGACGATTGAAATTGCGGTCACAAAACTTCTGTTAAGATCATACTATGACATTGTTAGGAAGAATATAGAGGACTCTGTACCAAAAGCAATAATGCACTTCTTGGTCAATCATACTAAGCGTGAGCTGCACAATGTCTTCATTAAGAAGCTTTACAGAGAAAACTTGTTTGAAGAGATGCTGCAGGAACCTGATGAAGTATCAATGAAGAGAAAGCGCACCCGGGAGACCCTTCGAGTTCTGCAACAGGCTTTCCGGGTAGGGTATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

744

Amino Acids

82.58

Weight (kDa)

6.58

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	51 - 231	2.5e-54	Dynamin family
Dynamin_M	PF01031	239 - 525	5.6e-105	Dynamin central region
GED	PF02212	654 - 740	6.2e-26	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14120 AT2G14120 AT2G14120 AT2G14120 AT4G33650 AT4G33650
fragaria_vesca	FvH4_2g11510 FvH4_2g11510 FvH4_2g11510 FvH4_2g11510
malus_domestica	MD05G1049000.v1.1 MD10G1055800.v1.1
prunus_persica	Prupe.8G071400_v2.0.a1 Prupe.8G071400_v2.0.a1
pyrus_communis	pycom05g04070 pycom05g04080 pycom10g04290
rosa_chinensis	RchiOBHm_Chr6g0270491
rosa_laevigata	RLG00000013786
rosa_multiflora	Rmu_co8311497.1_g000001 Rmu_sc0009291.1_g000006 Rmu_sc0021982.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197890
rosa_rugosa	Rorug06G0054900
rosa_samantha	Rh6CG173300 Rh6DG165800
rosa_wichuraiana	Rw6G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	389, 1774
Acc36I	ACCTGC	2 cut(s)	389, 1774
AccB1I	GGYRCC	4 cut(s)	22, 296, 1288, 1654
AccB7I	CCANNNNNTGG	2 cut(s)	1769, 1885
AccI	GTMKAC	1 cut(s)	1641
AccII	CGCG	3 cut(s)	113, 213, 247
AciI	CCGC	9 cut(s)	35, 177, 211, 250, 856, 888, 1143, 1435, 1979
AclWI	GGATC	6 cut(s)	73, 647, 1196, 1209, 1328, 1900
AcsI	RAATTY	7 cut(s)	372, 567, 604, 619, 1152, 1713, 1797
AcuI	CTGAAG	1 cut(s)	617
AcvI	CACGTG	1 cut(s)	328
AfaI	GTAC	7 cut(s)	311, 712, 948, 1076, 1281, 1831, 2043
AfeI	AGCGCT	1 cut(s)	341
AfiI	CCNNNNNNNGG	6 cut(s)	901, 1014, 1727, 1769, 1772, 1885
AhlI	ACTAGT	1 cut(s)	982
AjnI	CCWGG	6 cut(s)	63, 99, 331, 484, 1352, 1725
Alw21I	GWGCWC	5 cut(s)	144, 195, 264, 1051, 1150
Alw26I	GTCTC	6 cut(s)	377, 668, 1481, 1838, 1958, 2183
AlwI	GGATC	6 cut(s)	73, 647, 1196, 1209, 1328, 1900
Ama87I	CYCGRG	3 cut(s)	194, 952, 2184
Aor51HI	AGCGCT	1 cut(s)	341
AoxI	GGCC	5 cut(s)	198, 208, 1471, 1566, 1774
ApeKI	GCWGC	8 cut(s)	115, 165, 599, 885, 1392, 1411, 2089, 2143
ApoI	RAATTY	7 cut(s)	372, 567, 604, 619, 1152, 1713, 1797
Asp700I	GAANNNNTTC	1 cut(s)	1758
AspLEI	GCGC	5 cut(s)	115, 249, 285, 342, 2181
AspS9I	GGNCC	4 cut(s)	199, 1213, 1259, 1775
AsuC2I	CCSGG	5 cut(s)	953, 954, 2185, 2186, 2219
AsuHPI	GGTGA	2 cut(s)	521, 1603
AvaI	CYCGRG	3 cut(s)	194, 952, 2184
AvaII	GGWCC	2 cut(s)	1213, 1259
AxyI	CCTNAGG	1 cut(s)	147
BaeI	ACNNNNGTAYC	2 cut(s)	796, 829
BamHI	GGATCC	1 cut(s)	1201
BanI	GGYRCC	4 cut(s)	22, 296, 1288, 1654
BanII	GRGCYC	4 cut(s)	15, 144, 1051, 1923
BauI	CACGAG	1 cut(s)	257
BbrPI	CACGTG	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	2092
Bbv12I	GWGCWC	5 cut(s)	144, 195, 264, 1051, 1150
BbvCI	CCTCAGC	1 cut(s)	834
BbvI	GCAGC	8 cut(s)	127, 177, 611, 872, 1379, 1423, 2076, 2130
BceAI	ACGGC	4 cut(s)	140, 328, 1553, 1846
BcgI	CGANNNNNNTGC	4 cut(s)	588, 622, 1304, 1338
BciT130I	CCWGG	6 cut(s)	65, 101, 333, 486, 1354, 1727
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	5 cut(s)	953, 954, 2185, 2186, 2219
BcoDI	GTCTC	6 cut(s)	377, 668, 1481, 1838, 1958, 2183
BcuI	ACTAGT	1 cut(s)	982
BfaI	CTAG	6 cut(s)	587, 758, 875, 926, 983, 1623
BfmI	CTRYAG	2 cut(s)	1740, 2144
BfoI	RGCGCY	1 cut(s)	343
BfuAI	ACCTGC	2 cut(s)	389, 1774
BglII	AGATCT	1 cut(s)	478
BmcAI	AGTACT	2 cut(s)	948, 1076
Bme18I	GGWCC	2 cut(s)	1213, 1259
BmeT110I	CYCGRG	3 cut(s)	194, 952, 2184
BmgT120I	GGNCC	4 cut(s)	199, 1213, 1259, 1775
BmiI	GGNNCC	9 cut(s)	24, 124, 298, 501, 1203, 1260, 1290, 1656, 2151
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	5 cut(s)	616, 706, 811, 900, 2130
BmuI	ACTGGG	1 cut(s)	854
BpiI	GAAGAC	1 cut(s)	2092
BplI	GAGNNNNNCTC	2 cut(s)	1038, 1070
BpmI	CTGGAG	3 cut(s)	83, 248, 1791
Bpu10I	CCTNAGC	1 cut(s)	834
BpuMI	CCSGG	5 cut(s)	953, 954, 2185, 2186, 2219
BsaAI	YACGTR	1 cut(s)	328
BsaI	GGTCTC	3 cut(s)	668, 1838, 2183
BsaJI	CCNNGG	8 cut(s)	63, 64, 226, 952, 953, 996, 1726, 2184
BsaWI	WCCGGW	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	6 cut(s)	901, 1014, 1727, 1769, 1772, 1885
Bse1I	ACTGG	4 cut(s)	186, 477, 860, 1008
Bse21I	CCTNAGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	1580
BseBI	CCWGG	6 cut(s)	65, 101, 333, 486, 1354, 1727
BseDI	CCNNGG	8 cut(s)	63, 64, 226, 952, 953, 996, 1726, 2184
BseGI	GGATG	5 cut(s)	47, 891, 1443, 1447, 1639
BseLI	CCNNNNNNNGG	6 cut(s)	901, 1014, 1727, 1769, 1772, 1885
BseMI	GCAATG	1 cut(s)	1580
BseNI	ACTGG	4 cut(s)	186, 477, 860, 1008
BseRI	GAGGAG	2 cut(s)	320, 1208
BseXI	GCAGC	8 cut(s)	127, 177, 611, 872, 1379, 1423, 2076, 2130
BseYI	CCCAGC	1 cut(s)	1337
BsgI	GTGCAG	3 cut(s)	226, 963, 2075
Bsh1236I	CGCG	3 cut(s)	113, 213, 247
BshFI	GGCC	5 cut(s)	200, 210, 1473, 1568, 1776
BshNI	GGYRCC	4 cut(s)	22, 296, 1288, 1654
BsiHKAI	GWGCWC	5 cut(s)	144, 195, 264, 1051, 1150
BsiHKCI	CYCGRG	3 cut(s)	194, 952, 2184
BsiSI	CCGG	4 cut(s)	808, 953, 2185, 2218
BsiWI	CGTACG	1 cut(s)	1829
BslI	CCNNNNNNNGG	6 cut(s)	901, 1014, 1727, 1769, 1772, 1885
BsmAI	GTCTC	6 cut(s)	377, 668, 1481, 1838, 1958, 2183
BsmBI	CGTCTC	1 cut(s)	1958
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	5 cut(s)	200, 210, 1473, 1568, 1776
Bso31I	GGTCTC	3 cut(s)	668, 1838, 2183
BsoBI	CYCGRG	3 cut(s)	194, 952, 2184
Bsp1286I	GDGCHC	7 cut(s)	15, 144, 195, 264, 1051, 1150, 1923
Bsp143I	GATC	9 cut(s)	78, 478, 549, 652, 880, 1201, 1333, 1905, 2000
BspACI	CCGC	9 cut(s)	35, 177, 211, 250, 856, 888, 1143, 1435, 1979
BspANI	GGCC	5 cut(s)	200, 210, 1473, 1568, 1776
BspFNI	CGCG	3 cut(s)	113, 213, 247
BspLI	GGNNCC	9 cut(s)	24, 124, 298, 501, 1203, 1260, 1290, 1656, 2151
BspMAI	CTGCAG	1 cut(s)	2148
BspMI	ACCTGC	2 cut(s)	389, 1774
BspPI	GGATC	6 cut(s)	73, 647, 1196, 1209, 1328, 1900
BspQI	GCTCTTC	2 cut(s)	636, 1056
BspT107I	GGYRCC	4 cut(s)	22, 296, 1288, 1654
BspTNI	GGTCTC	3 cut(s)	668, 1838, 2183
BsrDI	GCAATG	1 cut(s)	1580
BsrI	ACTGG	4 cut(s)	186, 477, 860, 1008
BssECI	CCNNGG	8 cut(s)	63, 64, 226, 952, 953, 996, 1726, 2184
BssMI	GATC	9 cut(s)	78, 478, 549, 652, 880, 1201, 1333, 1905, 2000
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	996
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	6 cut(s)	65, 101, 333, 486, 1354, 1727
Bst4CI	ACNGT	2 cut(s)	1829, 1930
Bst6I	CTCTTC	4 cut(s)	636, 1056, 2130, 2165
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	245, 1836
BstDSI	CCRYGG	1 cut(s)	226
BstEII	GGTNACC	1 cut(s)	509
BstENI	CCTNNNNNAGG	1 cut(s)	1770
BstF5I	GGATG	5 cut(s)	47, 891, 1443, 1447, 1639
BstFNI	CGCG	3 cut(s)	113, 213, 247
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	5 cut(s)	115, 249, 285, 342, 2181
BstKTI	GATC	9 cut(s)	81, 481, 552, 655, 883, 1204, 1336, 1908, 2003
BstMAI	GTCTC	6 cut(s)	377, 668, 1481, 1838, 1958, 2183
BstMBI	GATC	9 cut(s)	78, 478, 549, 652, 880, 1201, 1333, 1905, 2000
BstMWI	GCNNNNNNNGC	8 cut(s)	174, 249, 337, 596, 647, 830, 1392, 2089
BstNI	CCWGG	6 cut(s)	65, 101, 333, 486, 1354, 1727
BstNSI	RCATGY	2 cut(s)	1007, 1544
BstPI	GGTNACC	1 cut(s)	509
BstSFI	CTRYAG	2 cut(s)	1740, 2144
BstUI	CGCG	3 cut(s)	113, 213, 247
BstV1I	GCAGC	8 cut(s)	127, 177, 611, 872, 1379, 1423, 2076, 2130
BstV2I	GAAGAC	1 cut(s)	2092
BstX2I	RGATCY	3 cut(s)	478, 1201, 1333
BstYI	RGATCY	3 cut(s)	478, 1201, 1333
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	5 cut(s)	200, 210, 1473, 1568, 1776
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	1373
BtsCI	GGATG	5 cut(s)	47, 891, 1443, 1447, 1639
BtsIMutI	CAGTG	3 cut(s)	24, 193, 470
BveI	ACCTGC	2 cut(s)	389, 1774
Cac8I	GCNNGC	2 cut(s)	245, 1836
CfoI	GCGC	5 cut(s)	115, 249, 285, 342, 2181
Cfr13I	GGNCC	4 cut(s)	199, 1213, 1259, 1775
Cfr9I	CCCGGG	2 cut(s)	952, 2184
Csp6I	GTAC	7 cut(s)	310, 711, 947, 1075, 1280, 1830, 2042
CviAII	CATG	4 cut(s)	553, 1004, 1541, 1885
CviQI	GTAC	7 cut(s)	310, 711, 947, 1075, 1280, 1830, 2042
DpnI	GATC	9 cut(s)	80, 480, 551, 654, 882, 1203, 1335, 1907, 2002
DpnII	GATC	9 cut(s)	78, 478, 549, 652, 880, 1201, 1333, 1905, 2000
Eam1104I	CTCTTC	4 cut(s)	636, 1056, 2130, 2165
EarI	CTCTTC	4 cut(s)	636, 1056, 2130, 2165
EciI	GGCGGA	1 cut(s)	1158
Ecl136II	GAGCTC	2 cut(s)	142, 1049
Eco130I	CCWWGG	1 cut(s)	996
Eco147I	AGGCCT	1 cut(s)	1473
Eco24I	GRGCYC	4 cut(s)	15, 144, 1051, 1923
Eco31I	GGTCTC	3 cut(s)	668, 1838, 2183
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	1213, 1259
Eco47III	AGCGCT	1 cut(s)	341
Eco53kI	GAGCTC	2 cut(s)	142, 1049
Eco57I	CTGAAG	1 cut(s)	617
Eco72I	CACGTG	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	3 cut(s)	194, 952, 2184
Eco91I	GGTNACC	1 cut(s)	509
EcoICRI	GAGCTC	2 cut(s)	142, 1049
EcoNI	CCTNNNNNAGG	1 cut(s)	1770
EcoO109I	RGGNCCY	3 cut(s)	199, 1213, 1259
EcoO65I	GGTNACC	1 cut(s)	509
EcoRI	GAATTC	1 cut(s)	1152
EcoRII	CCWGG	6 cut(s)	63, 99, 331, 484, 1352, 1725
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	996
EcoT38I	GRGCYC	4 cut(s)	15, 144, 1051, 1923
ErhI	CCWWGG	1 cut(s)	996
Esp3I	CGTCTC	1 cut(s)	1958
FaeI	CATG	4 cut(s)	556, 1007, 1544, 1888
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FatI	CATG	4 cut(s)	552, 1003, 1540, 1884
FbaI	TGATCA	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	1641
FokI	GGATG	5 cut(s)	34, 878, 1450, 1454, 1646
FriOI	GRGCYC	4 cut(s)	15, 144, 1051, 1923
FspBI	CTAG	6 cut(s)	587, 758, 875, 926, 983, 1623
GlaI	GCGC	5 cut(s)	114, 248, 284, 341, 2180
GsaI	CCCAGC	1 cut(s)	1341
GsuI	CTGGAG	3 cut(s)	83, 248, 1791
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	5 cut(s)	200, 210, 1473, 1568, 1776
HapII	CCGG	4 cut(s)	808, 953, 2185, 2218
HhaI	GCGC	5 cut(s)	115, 249, 285, 342, 2181
Hin1II	CATG	4 cut(s)	556, 1007, 1544, 1888
Hin6I	GCGC	5 cut(s)	113, 247, 283, 340, 2179
HinP1I	GCGC	5 cut(s)	113, 247, 283, 340, 2179
HincII	GTYRAC	1 cut(s)	1125
HindII	GTYRAC	1 cut(s)	1125
HindIII	AAGCTT	1 cut(s)	2111
HinfI	GANTC	9 cut(s)	430, 778, 916, 922, 1028, 1416, 1606, 1643, 2036
HpaII	CCGG	4 cut(s)	808, 953, 2185, 2218
HphI	GGTGA	2 cut(s)	521, 1603
Hpy166II	GTNNAC	3 cut(s)	91, 1125, 1642
Hpy188III	TCNNGA	7 cut(s)	461, 656, 788, 1168, 1309, 1683, 1933
Hpy8I	GTNNAC	3 cut(s)	91, 1125, 1642
Hpy99I	CGWCG	3 cut(s)	161, 164, 1258
HpyAV	CCTTC	7 cut(s)	48, 54, 332, 360, 1352, 1463, 2204
HpyCH4III	ACNGT	2 cut(s)	1829, 1930
HpyCH4IV	ACGT	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	8 cut(s)	174, 249, 337, 596, 647, 830, 1392, 2089
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	4 cut(s)	556, 1007, 1544, 1888
HspAI	GCGC	5 cut(s)	113, 247, 283, 340, 2179
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	9 cut(s)	78, 478, 549, 652, 880, 1201, 1333, 1905, 2000
LguI	GCTCTTC	2 cut(s)	636, 1056
LmnI	GCTCC	5 cut(s)	102, 147, 267, 1046, 1145
Lsp1109I	GCAGC	8 cut(s)	127, 177, 611, 872, 1379, 1423, 2076, 2130
LweI	GCATC	5 cut(s)	616, 706, 811, 900, 2130
MaeI	CTAG	6 cut(s)	587, 758, 875, 926, 983, 1623
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	5 cut(s)	415, 509, 592, 682, 1981
MalI	GATC	9 cut(s)	80, 480, 551, 654, 882, 1203, 1335, 1907, 2002
MboI	GATC	9 cut(s)	78, 478, 549, 652, 880, 1201, 1333, 1905, 2000
MflI	RGATCY	3 cut(s)	478, 1201, 1333
MhlI	GDGCHC	7 cut(s)	15, 144, 195, 264, 1051, 1150, 1923
MlyI	GAGTC	2 cut(s)	1637, 2030
MroXI	GAANNNNTTC	1 cut(s)	1758
MseI	TTAA	6 cut(s)	581, 1059, 1850, 1913, 1997, 2106
MslI	CAYNNNNRTG	1 cut(s)	1901
MspI	CCGG	4 cut(s)	808, 953, 2185, 2218
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	6 cut(s)	65, 101, 333, 486, 1354, 1727
MvnI	CGCG	3 cut(s)	113, 213, 247
MwoI	GCNNNNNNNGC	8 cut(s)	174, 249, 337, 596, 647, 830, 1392, 2089
NciI	CCSGG	5 cut(s)	953, 954, 2185, 2186, 2219
NdeII	GATC	9 cut(s)	78, 478, 549, 652, 880, 1201, 1333, 1905, 2000
NlaIII	CATG	4 cut(s)	556, 1007, 1544, 1888
NlaIV	GGNNCC	9 cut(s)	24, 124, 298, 501, 1203, 1260, 1290, 1656, 2151
NmuCI	GTSAC	5 cut(s)	415, 509, 592, 682, 1981
NspI	RCATGY	2 cut(s)	1007, 1544
PaeR7I	CTCGAG	1 cut(s)	194
PaqCI	CACCTGC	2 cut(s)	389, 1774
PasI	CCCWGGG	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	1473
PciSI	GCTCTTC	2 cut(s)	636, 1056
PctI	GAATGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	1758
PfeI	GAWTC	7 cut(s)	430, 778, 916, 922, 1028, 1416, 1606
Pfl23II	CGTACG	1 cut(s)	1829
PflMI	CCANNNNNTGG	2 cut(s)	1769, 1885
PfoI	TCCNGGA	1 cut(s)	99
PleI	GAGTC	2 cut(s)	1637, 2030
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
PpsI	GAGTC	2 cut(s)	1637, 2030
Ppu21I	YACGTR	1 cut(s)	328
PpuMI	RGGWCCY	2 cut(s)	1213, 1259
Psp124BI	GAGCTC	2 cut(s)	144, 1051
Psp5II	RGGWCCY	2 cut(s)	1213, 1259
Psp6I	CCWGG	6 cut(s)	63, 99, 331, 484, 1352, 1725
PspCI	CACGTG	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	509
PspFI	CCCAGC	1 cut(s)	1337
PspGI	CCWGG	6 cut(s)	63, 99, 331, 484, 1352, 1725
PspLI	CGTACG	1 cut(s)	1829
PspN4I	GGNNCC	9 cut(s)	24, 124, 298, 501, 1203, 1260, 1290, 1656, 2151
PspPI	GGNCC	4 cut(s)	199, 1213, 1259, 1775
PspPPI	RGGWCCY	2 cut(s)	1213, 1259
PspXI	VCTCGAGB	1 cut(s)	194
PsrI	GAACNNNNNNTAC	2 cut(s)	302, 334
PstI	CTGCAG	1 cut(s)	2148
PsuI	RGATCY	3 cut(s)	478, 1201, 1333
RsaI	GTAC	7 cut(s)	311, 712, 948, 1076, 1281, 1831, 2043
RsaNI	GTAC	7 cut(s)	310, 711, 947, 1075, 1280, 1830, 2042
RseI	CAYNNNNRTG	1 cut(s)	1901
SacI	GAGCTC	2 cut(s)	144, 1051
SapI	GCTCTTC	2 cut(s)	636, 1056
SaqAI	TTAA	6 cut(s)	581, 1059, 1850, 1913, 1997, 2106
Sau3AI	GATC	9 cut(s)	78, 478, 549, 652, 880, 1201, 1333, 1905, 2000
Sau96I	GGNCC	4 cut(s)	199, 1213, 1259, 1775
ScaI	AGTACT	2 cut(s)	948, 1076
SchI	GAGTC	2 cut(s)	1637, 2030
SduI	GDGCHC	7 cut(s)	15, 144, 195, 264, 1051, 1150, 1923
SfaNI	GCATC	5 cut(s)	616, 706, 811, 900, 2130
SfcI	CTRYAG	2 cut(s)	1740, 2144
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	1213, 1259
SlaI	CTCGAG	1 cut(s)	194
SmaI	CCCGGG	2 cut(s)	954, 2186
SmiMI	CAYNNNNRTG	1 cut(s)	1901
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	982
SseBI	AGGCCT	1 cut(s)	1473
SsiI	CCGC	9 cut(s)	35, 177, 211, 250, 856, 888, 1143, 1435, 1979
SspMI	CTAG	6 cut(s)	587, 758, 875, 926, 983, 1623
SstI	GAGCTC	2 cut(s)	144, 1051
StuI	AGGCCT	1 cut(s)	1473
StyI	CCWWGG	1 cut(s)	996
TaaI	ACNGT	2 cut(s)	1829, 1930
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	4 cut(s)	138, 195, 1101, 2197
TatI	WGTACW	2 cut(s)	946, 1074
TauI	GCSGC	5 cut(s)	180, 213, 252, 858, 891
TfiI	GAWTC	7 cut(s)	430, 778, 916, 922, 1028, 1416, 1606
Tru1I	TTAA	6 cut(s)	581, 1059, 1850, 1913, 1997, 2106
Tru9I	TTAA	6 cut(s)	581, 1059, 1850, 1913, 1997, 2106
TscAI	CASTG	3 cut(s)	24, 193, 477
TseFI	GTSAC	5 cut(s)	415, 509, 592, 682, 1981
TseI	GCWGC	8 cut(s)	115, 165, 599, 885, 1392, 1411, 2089, 2143
Tsp45I	GTSAC	5 cut(s)	415, 509, 592, 682, 1981
TspGWI	ACGGA	2 cut(s)	550, 839
TspMI	CCCGGG	2 cut(s)	952, 2184
TspRI	CASTG	3 cut(s)	24, 193, 477
Van91I	CCANNNNNTGG	2 cut(s)	1769, 1885
VpaK11BI	GGWCC	2 cut(s)	1213, 1259
XagI	CCTNNNNNAGG	1 cut(s)	1770
XapI	RAATTY	7 cut(s)	372, 567, 604, 619, 1152, 1713, 1797
XceI	RCATGY	2 cut(s)	1007, 1544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	194
XmaI	CCCGGG	2 cut(s)	952, 2184
XmiI	GTMKAC	1 cut(s)	1641
XmnI	GAANNNNTTC	1 cut(s)	1758
XspI	CTAG	6 cut(s)	587, 758, 875, 926, 983, 1623
ZrmI	AGTACT	2 cut(s)	948, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.