Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006045

Physical Location & Seq

Genomic Coordinates Forward (+)

4715379 .. 4717173

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCACTTCCTGGTGAATCATACAAAGCGTGAGCTGCACAACGTCTTCATTAAGAAGCTTTACCGTGAGGACCTGTTCGAAGGGATGCTGCAGGAGCCAGATGAAGTAGCAATGAAAAGAAAGCGAACCCGGGAAACCCTCCGAGTTCTGCAACAGGCTTTCCGGACGTTGGATGAACTGCCTTTGGAAGCTGACACAGTTGAAAAAGGTTATTCTTTGGGTGCTGATCCAACAGGGTTGCCAAAGATCCATGGCTTGCCAACATCATCACTGTATAATACAAGTAGTTCACATGATTCCTACTCCTCTTCACCTAAGAATACAAAGTCTAGAAAGTCGTCTCACTCAGGGGAGCTTCACTCGCCATTTTATTCTAATGCGGATTCAAATGGAAGTGGACGCATGTACATGCCTAGTCTATATCCAACTGTTGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

147

Amino Acids

16.56

Weight (kDa)

7.99

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GED	PF02212	1 - 59	2.9e-14	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14120 AT2G14120 AT2G14120 AT2G14120 AT4G33650 AT4G33650
fragaria_vesca	FvH4_2g11510 FvH4_2g11510 FvH4_2g11510 FvH4_2g11510
malus_domestica	MD05G1049000.v1.1 MD10G1055800.v1.1
prunus_persica	Prupe.8G071400_v2.0.a1 Prupe.8G071400_v2.0.a1
pyrus_communis	pycom05g04070 pycom05g04080 pycom10g04290
rosa_chinensis	RchiOBHm_Chr6g0270491
rosa_laevigata	RLG00000013786
rosa_multiflora	Rmu_co8311497.1_g000001 Rmu_sc0009291.1_g000006 Rmu_sc0021982.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197890
rosa_rugosa	Rorug06G0054900
rosa_samantha	Rh6CG173300 Rh6DG165800
rosa_wichuraiana	Rw6G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	3 cut(s)	221, 241, 428
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	203, 387
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	4 cut(s)	34, 58, 191, 355
AluI	AGCT	4 cut(s)	34, 58, 191, 355
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	3 cut(s)	221, 241, 428
Ama87I	CYCGRG	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	34, 88
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	2 cut(s)	130, 131
AsuHPI	GGTGA	2 cut(s)	25, 303
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	21, 75
BciT130I	CCWGG	1 cut(s)	11
BcnI	CCSGG	2 cut(s)	130, 131
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	2 cut(s)	330, 414
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	35, 89
BlsI	GCNGC	2 cut(s)	36, 90
Bme1390I	CCNGG	3 cut(s)	11, 130, 131
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	3 cut(s)	11, 130, 131
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
Bpu14I	TTCGAA	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	130, 131
BsaJI	CCNNGG	2 cut(s)	129, 250
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	129, 250
BseGI	GGATG	2 cut(s)	90, 178
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	21, 75
BsgI	GTGCAG	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	130, 163
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	226, 246, 433
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	359
BspEI	TCCGGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	3 cut(s)	221, 241, 428
BspT104I	TTCGAA	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	129, 250
BssMI	GATC	3 cut(s)	226, 246, 433
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	4 cut(s)	65, 199, 273, 430
Bst6I	CTCTTC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	405
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	315, 346
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	90, 178
BstKTI	GATC	3 cut(s)	229, 249, 436
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	226, 246, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 94, 361
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	406, 412
BstSCI	CCNGG	3 cut(s)	9, 128, 129
BstSFI	CTRYAG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	21, 75
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	90, 178
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	70
Cfr9I	CCCGGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	4 cut(s)	251, 293, 403, 409
CviJI	RGCY	7 cut(s)	34, 58, 97, 158, 191, 255, 355
CviKI_1	RGCY	7 cut(s)	34, 58, 97, 158, 191, 255, 355
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	315, 346
DpnI	GATC	3 cut(s)	228, 248, 435
DpnII	GATC	3 cut(s)	226, 246, 433
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	4 cut(s)	254, 296, 406, 412
FaiI	YATR	8 cut(s)	21, 252, 276, 294, 404, 410, 421, 439
FatI	CATG	4 cut(s)	250, 292, 402, 408
Fnu4HI	GCNGC	2 cut(s)	35, 89
FokI	GGATG	2 cut(s)	97, 185
Fsp4HI	GCNGC	2 cut(s)	35, 89
FspBI	CTAG	2 cut(s)	330, 414
GluI	GCNGC	2 cut(s)	35, 89
HapII	CCGG	2 cut(s)	130, 163
HgaI	GACGC	1 cut(s)	408
Hin1II	CATG	4 cut(s)	254, 296, 406, 412
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	3 cut(s)	16, 296, 383
HpaII	CCGG	2 cut(s)	130, 163
HphI	GGTGA	2 cut(s)	25, 303
Hpy166II	GTNNAC	2 cut(s)	290, 398
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	163, 330
Hpy8I	GTNNAC	2 cut(s)	290, 398
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	4 cut(s)	65, 199, 273, 430
HpyCH4IV	ACGT	2 cut(s)	42, 167
HpyCH4V	TGCA	4 cut(s)	4, 37, 91, 151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 94, 361
HpyF3I	CTNAG	2 cut(s)	315, 346
HpySE526I	ACGT	2 cut(s)	42, 167
Hsp92II	CATG	4 cut(s)	254, 296, 406, 412
Kpn2I	TCCGGA	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	226, 246, 433
LmnI	GCTCC	2 cut(s)	94, 352
LpnPI	CCDG	9 cut(s)	23, 77, 86, 111, 140, 143, 176, 219, 333
Lsp1109I	GCAGC	2 cut(s)	21, 75
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	330, 414
MaeII	ACGT	2 cut(s)	42, 167
MalI	GATC	3 cut(s)	228, 248, 435
MboI	GATC	3 cut(s)	226, 246, 433
MboII	GAAGA	2 cut(s)	37, 300
MflI	RGATCY	1 cut(s)	246
MmeI	TCCRAC	2 cut(s)	150, 254
MnlI	CCTC	3 cut(s)	61, 149, 316
MroI	TCCGGA	1 cut(s)	162
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	2 cut(s)	130, 163
MspR9I	CCNGG	3 cut(s)	11, 130, 131
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	34, 94, 361
NciI	CCSGG	2 cut(s)	130, 131
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	226, 246, 433
NlaIII	CATG	4 cut(s)	254, 296, 406, 412
NlaIV	GGNNCC	1 cut(s)	96
NspI	RCATGY	2 cut(s)	406, 412
NspV	TTCGAA	1 cut(s)	78
PfeI	GAWTC	3 cut(s)	16, 296, 383
PkrI	GCNGC	2 cut(s)	36, 90
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	70
PspPPI	RGGWCCY	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	35, 89
Sau3AI	GATC	3 cut(s)	226, 246, 433
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	3 cut(s)	11, 130, 131
SetI	ASST	9 cut(s)	36, 45, 60, 75, 170, 193, 211, 316, 357
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	1 cut(s)	70
SmaI	CCCGGG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	407
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	330, 414
StyD4I	CCNGG	3 cut(s)	9, 128, 129
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	65, 199, 273, 430
TaiI	ACGT	2 cut(s)	45, 170
TaqI	TCGA	1 cut(s)	78
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	16, 296, 383
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	34, 88
TspDTI	ATGAA	4 cut(s)	37, 117, 128, 189
TspMI	CCCGGG	1 cut(s)	129
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	329
XceI	RCATGY	2 cut(s)	406, 412
XmaI	CCCGGG	1 cut(s)	129
XspI	CTAG	2 cut(s)	330, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.