Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021982.1

Orthogroup ID

OG0006045

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2452

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021982.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 722 bp

gaggcccaagtgtatcaacttggggaatttcatctatttttggagggagtgataaccgtacgcctgctaaagagaccttaataaacaagccgtataatgaacctatccaccacatggaacaagccatatctatgatccatttaagagagcccccaactgtcttgaagcccacagaaaaccactcagagcaggagacaattgaaattgcggtcacaaaacttctgttaagatcatactatgacattgttaggaagaatatagaggactctgtaccaaaagcaataatgcacttcttggtcaatcatactaagcgtgagctgcacaatgtcttcattaagaagctttacagagaaaacttgtttgaagagatgctgcaggaacctgatgaagtatcaatgaagagaaagcgcacccgggagacccttcgagttctgcaacaggctttccggacattggatgagctgcctttggaagcagaaacagttgagaaaggttttactatgggtgctgatacgacagggttgccaaagatccatggattgcatacatcgtcgatgtactccacaggcagtccgaatgactcttactcttcacctaagaacccaaagcccagaaagtcatctcactctggagagctccactcaccgttttatgcaaatgcagattctaatggaagtgggcgcatgtacatgcctggtctatatccaactgttgatctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

239

Amino Acids

27.12

Weight (kDa)

6.92

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14120 AT2G14120 AT2G14120 AT2G14120 AT4G33650 AT4G33650
fragaria_vesca	FvH4_2g11510 FvH4_2g11510 FvH4_2g11510 FvH4_2g11510
malus_domestica	MD05G1049000.v1.1 MD10G1055800.v1.1
prunus_persica	Prupe.8G071400_v2.0.a1 Prupe.8G071400_v2.0.a1
pyrus_communis	pycom05g04070 pycom05g04080 pycom10g04290
rosa_chinensis	RchiOBHm_Chr6g0270491
rosa_laevigata	RLG00000013786
rosa_multiflora	Rmu_co8311497.1_g000001 Rmu_sc0009291.1_g000006 Rmu_sc0021982.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197890
rosa_rugosa	Rorug06G0054900
rosa_samantha	Rh6CG173300 Rh6DG165800
rosa_wichuraiana	Rw6G014820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	2 cut(s)	129, 525
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	4 cut(s)	60, 272, 559, 688
AfiI	CCNNNNNNNGG	2 cut(s)	114, 453
AgsI	TTSAA	3 cut(s)	165, 202, 364
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	4 cut(s)	318, 342, 462, 636
AluI	AGCT	4 cut(s)	318, 342, 462, 636
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	3 cut(s)	67, 187, 412
AlwI	GGATC	2 cut(s)	129, 525
Ama87I	CYCGRG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	446
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	318, 372, 462
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	410, 683
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	414, 415
AsuHPI	GGTGA	2 cut(s)	584, 635
AvaI	CYCGRG	1 cut(s)	413
BanII	GRGCYC	2 cut(s)	152, 638
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	3 cut(s)	305, 359, 449
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BciT130I	CCWGG	1 cut(s)	695
BcnI	CCSGG	2 cut(s)	414, 415
BcoDI	GTCTC	3 cut(s)	67, 187, 412
BfmI	CTRYAG	1 cut(s)	373
BisI	GCNGC	3 cut(s)	319, 373, 463
BlsI	GCNGC	3 cut(s)	320, 374, 464
Bme1390I	CCNGG	3 cut(s)	414, 415, 695
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	3 cut(s)	414, 415, 695
BmsI	GCATC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
BpmI	CTGGAG	1 cut(s)	650
BpuMI	CCSGG	2 cut(s)	414, 415
BsaI	GGTCTC	2 cut(s)	67, 412
BsaJI	CCNNGG	2 cut(s)	413, 534
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 453
BseAI	TCCGGA	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	2 cut(s)	413, 534
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	114, 453
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	305, 359, 449
BsgI	GTGCAG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	638
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	414, 447
BsiWI	CGTACG	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	114, 453
BsmAI	GTCTC	3 cut(s)	67, 187, 412
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	67, 412
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	152, 638
Bsp13I	TCCGGA	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	686
Bsp143I	GATC	4 cut(s)	134, 229, 530, 714
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	380
BspMAI	CTGCAG	1 cut(s)	377
BspPI	GGATC	2 cut(s)	129, 525
BspTNI	GGTCTC	2 cut(s)	67, 412
BsrGI	TGTACA	1 cut(s)	686
BssECI	CCNNGG	2 cut(s)	413, 534
BssMI	GATC	4 cut(s)	134, 229, 530, 714
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	5 cut(s)	58, 159, 483, 647, 711
Bst6I	CTCTTC	3 cut(s)	359, 394, 594
BstAUI	TGTACA	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	183, 308, 596
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	410, 683
BstKTI	GATC	4 cut(s)	137, 232, 533, 717
BstMAI	GTCTC	3 cut(s)	67, 187, 412
BstMBI	GATC	4 cut(s)	134, 229, 530, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	2 cut(s)	687, 693
BstSCI	CCNGG	3 cut(s)	412, 413, 693
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	3 cut(s)	305, 359, 449
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	2 cut(s)	410, 683
Cfr13I	GGNCC	1 cut(s)	4
Cfr9I	CCCGGG	1 cut(s)	413
Csp6I	GTAC	4 cut(s)	59, 271, 558, 687
CviAII	CATG	4 cut(s)	114, 535, 684, 690
CviQI	GTAC	4 cut(s)	59, 271, 558, 687
DdeI	CTNAG	3 cut(s)	183, 308, 596
DpnI	GATC	4 cut(s)	136, 231, 532, 716
DpnII	GATC	4 cut(s)	134, 229, 530, 714
Eam1104I	CTCTTC	3 cut(s)	359, 394, 594
EarI	CTCTTC	3 cut(s)	359, 394, 594
Ecl136II	GAGCTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	2 cut(s)	152, 638
Eco31I	GGTCTC	2 cut(s)	67, 412
Eco53kI	GAGCTC	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	534
EcoT38I	GRGCYC	2 cut(s)	152, 638
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	117, 538, 687, 693
FatI	CATG	4 cut(s)	113, 534, 683, 689
Fnu4HI	GCNGC	3 cut(s)	319, 373, 463
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	2 cut(s)	152, 638
Fsp4HI	GCNGC	3 cut(s)	319, 373, 463
GlaI	GCGC	2 cut(s)	409, 682
GluI	GCNGC	3 cut(s)	319, 373, 463
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	414, 447
HhaI	GCGC	2 cut(s)	410, 683
Hin1II	CATG	4 cut(s)	117, 538, 687, 693
Hin6I	GCGC	2 cut(s)	408, 681
HinP1I	GCGC	2 cut(s)	408, 681
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	265, 580, 664
HpaII	CCGG	2 cut(s)	414, 447
HphI	GGTGA	2 cut(s)	584, 635
Hpy188I	TCNGA	2 cut(s)	186, 575
Hpy188III	TCNNGA	3 cut(s)	162, 447, 629
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	5 cut(s)	58, 159, 483, 647, 711
HpyCH4V	TGCA	7 cut(s)	288, 321, 375, 435, 543, 655, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	3 cut(s)	183, 308, 596
Hsp92II	CATG	4 cut(s)	117, 538, 687, 693
HspAI	GCGC	2 cut(s)	408, 681
Kpn2I	TCCGGA	1 cut(s)	446
Kzo9I	GATC	4 cut(s)	134, 229, 530, 714
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	3 cut(s)	305, 359, 449
LweI	GCATC	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	4 cut(s)	136, 231, 532, 716
MboI	GATC	4 cut(s)	134, 229, 530, 714
MboII	GAAGA	5 cut(s)	264, 321, 376, 411, 581
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	2 cut(s)	152, 638
MluCI	AATT	3 cut(s)	26, 197, 203
MlyI	GAGTC	2 cut(s)	259, 574
MnlI	CCTC	2 cut(s)	37, 255
MroI	TCCGGA	1 cut(s)	446
MseI	TTAA	4 cut(s)	79, 142, 226, 335
MslI	CAYNNNNRTG	2 cut(s)	130, 688
MspI	CCGG	2 cut(s)	414, 447
MspR9I	CCNGG	3 cut(s)	414, 415, 695
MunI	CAATTG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	1 cut(s)	318
NciI	CCSGG	2 cut(s)	414, 415
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	4 cut(s)	134, 229, 530, 714
NlaIII	CATG	4 cut(s)	117, 538, 687, 693
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	210
NspI	RCATGY	2 cut(s)	687, 693
PfeI	GAWTC	1 cut(s)	664
Pfl23II	CGTACG	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	320, 374, 464
PleI	GAGTC	2 cut(s)	259, 574
PpsI	GAGTC	2 cut(s)	259, 574
Psp124BI	GAGCTC	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspLI	CGTACG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	530
RsaI	GTAC	4 cut(s)	60, 272, 559, 688
RsaNI	GTAC	4 cut(s)	59, 271, 558, 687
RseI	CAYNNNNRTG	2 cut(s)	130, 688
SacI	GAGCTC	1 cut(s)	638
SaqAI	TTAA	4 cut(s)	79, 142, 226, 335
SatI	GCNGC	3 cut(s)	319, 373, 463
Sau3AI	GATC	4 cut(s)	134, 229, 530, 714
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	259, 574
ScrFI	CCNGG	3 cut(s)	414, 415, 695
SduI	GDGCHC	2 cut(s)	152, 638
SetI	ASST	9 cut(s)	79, 105, 320, 344, 384, 464, 495, 597, 638
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	373
SmaI	CCCGGG	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	130, 688
Sse9I	AATT	3 cut(s)	26, 197, 203
SsiI	CCGC	1 cut(s)	208
SstI	GAGCTC	1 cut(s)	638
StyD4I	CCNGG	3 cut(s)	412, 413, 693
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	5 cut(s)	58, 159, 483, 647, 711
TaqI	TCGA	2 cut(s)	426, 553
TasI	AATT	3 cut(s)	26, 197, 203
TatI	WGTACW	2 cut(s)	557, 686
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	4 cut(s)	79, 142, 226, 335
Tru9I	TTAA	4 cut(s)	79, 142, 226, 335
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	3 cut(s)	318, 372, 462
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	5 cut(s)	20, 113, 321, 401, 412
TspMI	CCCGGG	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	2 cut(s)	687, 693
XmaI	CCCGGG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.