Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0017740

Physical Location & Seq

Genomic Coordinates Reverse (-)

15614159 .. 15614799

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCGTCTTACTCCACCGTTCACGTCAGGAAGGCCCGTGCGTGGTTTTTTGGGTGGGGATTTCAGATTTCAAGGGGGAGAGAGGTTGTGCTTCGTTTCAATTGGACCAAGCCTCTATTTGCAAATCGAGGCCCCGGTGAAGCATTAGCATTACAGGCCTGCAGGAAAGAAGAAGGAAGGAAATGCCGCGAGGTACGTCACCAGGTCACAAGCTGTCAAGCAGCTTCAAGTCAGTCTTCCCCTCTTCAGAAAATTGTGTATTCTAAAGGGCGTGTTCCCTTGGGAGCTGAAGAAAAAGGTGAAAGGAAATCACCATACCTATTATTACTTGAAGGATGTTTCTTTCATTCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.38

Weight (kDa)

10.1

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017740)

Species	Orthologous Gene IDs
malus_domestica	MD17G1028000.v1.1
pyrus_communis	pycom02g04040 pycom05g12120 pycom05g12150 pycom05g26230 pycom07g01210 pycom09g06540 pycom12g22520 pycom15g10860 pycom17g14480 pycom5153684g00420
rosa_roxburghii	Rroxscaffold_3G00247620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	230, 309
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	4 cut(s)	72, 100, 228, 332
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	213, 224, 287
AluI	AGCT	3 cut(s)	213, 224, 287
AoxI	GGCC	3 cut(s)	33, 130, 156
ApeKI	GCWGC	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	34, 105, 131
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	4 cut(s)	149, 191, 303, 311
AvaII	GGWCC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	2 cut(s)	187, 222
BlsI	GCNGC	2 cut(s)	188, 223
Bme1390I	CCNGG	2 cut(s)	135, 203
Bme18I	GGWCC	1 cut(s)	105
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	34, 105, 131
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	135, 203
BpiI	GAAGAC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	133, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	133, 279
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	35, 132, 158
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	42
BsnI	GGCC	3 cut(s)	35, 132, 158
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	3 cut(s)	35, 132, 158
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	133, 279
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	341
BstFNI	CGCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	133, 201
BstSFI	CTRYAG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	35, 132, 158
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	34, 105, 131
CsiI	ACCWGGT	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	7 cut(s)	35, 112, 132, 158, 213, 224, 287
CviKI_1	RGCY	7 cut(s)	35, 112, 132, 158, 213, 224, 287
CviQI	GTAC	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	230, 309
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	357
FaiI	YATR	2 cut(s)	316, 355
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FatI	CATG	1 cut(s)	353
Fnu4HI	GCNGC	2 cut(s)	187, 222
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	2 cut(s)	187, 222
GluI	GCNGC	2 cut(s)	187, 222
HaeIII	GGCC	3 cut(s)	35, 132, 158
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	357
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	4 cut(s)	149, 191, 303, 311
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	66, 249
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	25, 167, 171, 326
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	24, 196
HpyCH4V	TGCA	2 cut(s)	122, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	24, 196
Hsp92II	CATG	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	7 cut(s)	13, 140, 148, 148, 172, 188, 215
Lsp1109I	GCAGC	1 cut(s)	233
MabI	ACCWGGT	1 cut(s)	201
MaeII	ACGT	2 cut(s)	24, 196
MaeIII	GTNAC	2 cut(s)	197, 205
MboII	GAAGA	4 cut(s)	182, 228, 236, 302
MfeI	CAATTG	1 cut(s)	100
MluCI	AATT	2 cut(s)	100, 252
MnlI	CCTC	5 cut(s)	76, 122, 123, 184, 252
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	135, 203
MunI	CAATTG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	135
NlaIII	CATG	1 cut(s)	357
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	197, 205
PceI	AGGCCT	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	188, 223
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	3 cut(s)	34, 105, 131
PstI	CTGCAG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	187, 222
Sau96I	GGNCC	3 cut(s)	34, 105, 131
SbfI	CCTGCAGG	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	135, 203
SdaI	CCTGCAGG	1 cut(s)	164
SexAI	ACCWGGT	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	105
Sse8387I	CCTGCAGG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	100, 252
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	187
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	133, 201
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	2 cut(s)	27, 199
TaqI	TCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	100, 252
TauI	GCSGC	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	197, 205
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	2 cut(s)	197, 205
TspDTI	ATGAA	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.