pycom07g01210

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017740
Physical Location & Seq
Forward (+)
938697 .. 939209
513 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g01210.3

Sequence Viewer

Length: 264 bp
ATGTCGTCTTTCGCATCAGGAAGGCCCTTGCGTGGTTTTTTGGGTGGGGATTTCAGATTTCAAGCGGGAGAGAGGCTGTGCTTCGTTGCGATCGGGTCGAGCTTCTATCTGCAAATCGAGGCCCCAGTGAAGCATAAGCATTACAGGCCTGCGGGAAAGAAGAAGGAAGGAAATGCCGCTAGGTACGTCACCAGGTCACAAGTTGTCAAGCAGCTTCAAGTCAGTCTTCCCCTCTTCAGATTTTGTATCTTTATGTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000001 GO:0000166 GO:0000226 GO:0000287 GO:0001505 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006807 GO:0006810 GO:0006839 GO:0006915 GO:0006928 GO:0006996 GO:0007005 GO:0007006 GO:0007010 GO:0007017 GO:0007018 GO:0007154 GO:0007165 GO:0008088 GO:0008150 GO:0008152 GO:0008219 GO:0008637 GO:0009966 GO:0009987 GO:0010570 GO:0010646 GO:0010821 GO:0010970 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0016462 GO:0016579 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0019725 GO:0019867 GO:0019896 GO:0022406 GO:0023051 GO:0023052 GO:0030705 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032386 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032592 GO:0032865 GO:0032879 GO:0032886 GO:0032991 GO:0033043 GO:0034640 GO:0034643 GO:0035639 GO:0035794 GO:0036094 GO:0036211 GO:0040008 GO:0042592 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044233 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046872 GO:0046902 GO:0046907 GO:0046928 GO:0047497 GO:0048308 GO:0048311 GO:0048489 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051056 GO:0051128 GO:0051179 GO:0051234 GO:0051270 GO:0051588 GO:0051640 GO:0051641 GO:0051646 GO:0051648 GO:0051649 GO:0051650 GO:0051654 GO:0051656 GO:0051716 GO:0055081 GO:0055088 GO:0055091 GO:0060237 GO:0060341 GO:0060632 GO:0061024 GO:0065007 GO:0065008 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0072384 GO:0090559 GO:0097159 GO:0097190 GO:0097345 GO:0097367 GO:0097479 GO:0097480 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:0098930 GO:0099003 GO:0099098 GO:0099111 GO:0099177 GO:0140056 GO:1900428 GO:1901265 GO:1901363 GO:1901564 GO:1902108 GO:1902110 GO:1902513 GO:1902531 GO:1902686 GO:1903338 GO:1903530 GO:1905710 GO:1990456
KEGG Pathways
Metabolic & Signaling
ko04137 ko04214 map04137 map04214
Pfam Domains
Protein Families
EF-hand_5 EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

88

Amino Acids

9.94

Weight (kDa)

10.55

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 65, 152, 177
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 62, 218
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 2 cut(s) 102, 214
AluI AGCT 2 cut(s) 102, 214
AoxI GGCC 3 cut(s) 23, 120, 146
ApeKI GCWGC 1 cut(s) 211
AspS9I GGNCC 2 cut(s) 24, 121
AsuHPI GGTGA 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 193
BfaI CTAG 1 cut(s) 180
BisI GCNGC 2 cut(s) 177, 212
BlsI GCNGC 2 cut(s) 178, 213
Bme1390I CCNGG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 24, 121
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 193
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 3 cut(s) 25, 122, 148
BsiEI CGRYCG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 32
BsnI GGCC 3 cut(s) 25, 122, 148
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 3 cut(s) 65, 152, 177
BspANI GGCC 3 cut(s) 25, 122, 148
BspLI GGNNCC 1 cut(s) 123
BsrI ACTGG 1 cut(s) 125
BssMI GATC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 3 cut(s) 25, 122, 148
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 24, 121
CsiI ACCWGGT 1 cut(s) 191
Csp6I GTAC 1 cut(s) 184
CviJI RGCY 6 cut(s) 25, 76, 102, 122, 148, 214
CviKI_1 RGCY 6 cut(s) 25, 76, 102, 122, 148, 214
CviQI GTAC 1 cut(s) 184
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 220
EcoO109I RGGNCCY 2 cut(s) 24, 121
EcoRII CCWGG 1 cut(s) 191
FaiI YATR 2 cut(s) 135, 254
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FauI CCCGC 2 cut(s) 58, 145
Fnu4HI GCNGC 2 cut(s) 177, 212
Fsp4HI GCNGC 2 cut(s) 177, 212
FspBI CTAG 1 cut(s) 180
GluI GCNGC 2 cut(s) 177, 212
HaeIII GGCC 3 cut(s) 25, 122, 148
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 56, 239
Hpy188III TCNNGA 1 cut(s) 18
HpyAV CCTTC 3 cut(s) 15, 157, 161
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 186
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 3, 130, 138, 162, 178, 205
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 23
MabI ACCWGGT 1 cut(s) 191
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 187, 195
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 3 cut(s) 172, 218, 226
MnlI CCTC 3 cut(s) 66, 112, 242
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 145
NdeII GATC 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 2 cut(s) 187, 195
PceI AGGCCT 1 cut(s) 148
PkrI GCNGC 2 cut(s) 178, 213
Ple19I CGATCG 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 24, 121
PvuI CGATCG 1 cut(s) 93
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SatI GCNGC 2 cut(s) 177, 212
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 24, 121
ScrFI CCNGG 1 cut(s) 193
SetI ASST 5 cut(s) 104, 185, 189, 197, 216
SexAI ACCWGGT 1 cut(s) 191
SfaNI GCATC 1 cut(s) 23
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 3 cut(s) 65, 152, 177
SspMI CTAG 1 cut(s) 180
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 191
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 98, 117
TauI GCSGC 1 cut(s) 179
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 2 cut(s) 187, 195
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 2 cut(s) 187, 195
TspRI CASTG 1 cut(s) 132
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.