Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017740

Physical Location & Seq

Genomic Coordinates Reverse (-)

40959996 .. 40960780

Gene Structure 785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGAAGAAGAAGCATTACGAGCCTGCCGGCAAGAAAAAGGAAGGAAACGCCGCCGGAGTTCGTCACCGAGTCCCAAGCCGTCAAGCAACTCCAAGTCAATCTTCCCCCTCTTCGGGAAACTATGTATTCGAAGGGTATATTTCCTCGGGAGCCGAAGAAAAAGGTGAAGGGGAATCACCATACGTATTAGCGTTGAAGGATGTTTCATTCATTCAACACGAACCGCTACTCGACAAGATGAGGGATACCGGGGCATATGAAAAGAAAGTAAAGAAAGCCAAGGGGAAGAAGAACGAGACCCAAGCTTTTGATGTTGCTATTGACTTAAATATCGTGCTTGAACTTTTTGGAGATGAGGCTCTTCTTGCTTTTGTGAATTGTCATTTATATCGTTCTGTAAATGTGAAGTATCCACCGATTCTTGATCCTCGATTGGAAGCTTTTGCAGCAGGTTTCAAGTTTGCCGGATCCGGTAAAATTGATGAGTGCGAATTAAGACTTGCCCAACTTCGACATCGCTTCCTTCCAATGAACTTGGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030684 GO:0030686 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:2000232

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT_2 Pescadillo_N

Protein Analysis

182

Amino Acids

20.26

Weight (kDa)

9.1

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	64 - 103	1.2e-06	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017740)

Species	Orthologous Gene IDs
malus_domestica	MD17G1028000.v1.1
pyrus_communis	pycom02g04040 pycom05g12120 pycom05g12150 pycom05g26230 pycom07g01210 pycom09g06540 pycom12g22520 pycom15g10860 pycom17g14480 pycom5153684g00420
rosa_roxburghii	Rroxscaffold_3G00247620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	443
AciI	CCGC	2 cut(s)	54, 227
AclWI	GGATC	3 cut(s)	422, 465, 478
AfiI	CCNNNNNNNGG	2 cut(s)	115, 116
AgsI	TTSAA	4 cut(s)	199, 218, 344, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	2 cut(s)	308, 443
AluI	AGCT	2 cut(s)	308, 443
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	422, 465, 478
Ama87I	CYCGRG	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	4 cut(s)	16, 59, 171, 179
AsuII	TTCGAA	1 cut(s)	132
AvaI	CYCGRG	1 cut(s)	148
BamHI	GGATCC	1 cut(s)	470
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	461
BceAI	ACGGC	1 cut(s)	66
BciVI	GTATCC	2 cut(s)	241, 423
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	2 cut(s)	241, 423
BisI	GCNGC	2 cut(s)	54, 450
BlsI	GCNGC	2 cut(s)	55, 451
Bme1390I	CCNGG	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	154, 472
BmrFI	CCNGG	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	147, 252, 282
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 116
Bse118I	RCCGGY	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	147, 252, 282
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	115, 116
BseXI	GCAGC	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	5 cut(s)	30, 57, 252, 468, 474
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	115, 116
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	427, 470
BspACI	CCGC	2 cut(s)	54, 227
BspLI	GGNNCC	2 cut(s)	154, 472
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	3 cut(s)	422, 465, 478
BspQI	GCTCTTC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	147, 252, 282
BssMI	GATC	2 cut(s)	427, 470
BssT1I	CCWWGG	1 cut(s)	282
Bst6I	CTCTTC	2 cut(s)	118, 369
BstBAI	YACGTR	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	27, 31
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	430, 473
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	427, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 368, 449
BstSCI	CCNGG	1 cut(s)	251
BstSNI	TACGTA	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuI	GTATCC	2 cut(s)	241, 423
BtgZI	GCGATG	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	27, 31
Cfr10I	RCCGGY	1 cut(s)	29
CviJI	RGCY	7 cut(s)	25, 81, 155, 281, 308, 362, 443
CviKI_1	RGCY	7 cut(s)	25, 81, 155, 281, 308, 362, 443
DpnI	GATC	2 cut(s)	429, 472
DpnII	GATC	2 cut(s)	427, 470
Eam1104I	CTCTTC	2 cut(s)	118, 369
EarI	CTCTTC	2 cut(s)	118, 369
Eco105I	TACGTA	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaiI	YATR	6 cut(s)	126, 141, 184, 259, 261, 391
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FaqI	GGGAC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	54, 450
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	54, 450
GluI	GCNGC	2 cut(s)	54, 450
HapII	CCGG	5 cut(s)	30, 57, 252, 468, 474
HindIII	AAGCTT	2 cut(s)	306, 441
HinfI	GANTC	3 cut(s)	72, 176, 421
HpaII	CCGG	5 cut(s)	30, 57, 252, 468, 474
HphI	GGTGA	4 cut(s)	16, 59, 171, 179
Hpy188III	TCNNGA	3 cut(s)	117, 150, 425
HpyAV	CCTTC	5 cut(s)	38, 128, 164, 193, 536
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	449, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 368, 449
HpySE526I	ACGT	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	427, 470
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	7 cut(s)	39, 43, 70, 265, 438, 481, 487
Lsp1109I	GCAGC	1 cut(s)	461
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	429, 472
MboI	GATC	2 cut(s)	427, 470
MboII	GAAGA	8 cut(s)	19, 22, 96, 105, 170, 301, 304, 356
MflI	RGATCY	1 cut(s)	470
MluCI	AATT	3 cut(s)	379, 480, 494
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	121, 157, 237, 352, 441
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	2 cut(s)	329, 497
MspI	CCGG	5 cut(s)	30, 57, 252, 468, 474
MspR9I	CCNGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	3 cut(s)	22, 368, 449
NaeI	GCCGGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	2 cut(s)	427, 470
NgoMIV	GCCGGC	1 cut(s)	29
NlaIV	GGNNCC	2 cut(s)	154, 472
NmuCI	GTSAC	1 cut(s)	65
NspV	TTCGAA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	176, 421
PkrI	GCNGC	2 cut(s)	55, 451
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	154, 472
PsuI	RGATCY	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	329, 497
SatI	GCNGC	2 cut(s)	54, 450
Sau3AI	GATC	2 cut(s)	427, 470
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	253
SetI	ASST	5 cut(s)	169, 189, 310, 445, 457
SfuI	TTCGAA	1 cut(s)	132
SnaBI	TACGTA	1 cut(s)	187
Sse9I	AATT	3 cut(s)	379, 480, 494
SsiI	CCGC	2 cut(s)	54, 227
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	4 cut(s)	132, 234, 433, 514
TasI	AATT	3 cut(s)	379, 480, 494
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	176, 421
Tru1I	TTAA	2 cut(s)	329, 497
Tru9I	TTAA	2 cut(s)	329, 497
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	198, 202, 276, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.