Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015059

Physical Location & Seq

Genomic Coordinates Reverse (-)

18967329 .. 18967718

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAATGACACTCTCTCTCCTCCGTTGTCCCCCAACGACGGCGCCAATACCTACGAGACCTGGTACGGCAACATCCAGTACCTTCTCAACATCTCCGCCATCGACTTCTTCTTCTGCGTCTTTTTCTTCATCTTCATCAAGCTCCGAAGCGACCACCGCCGCATGCCCAGCCCGTCCGCCAAGCTCCTCGCGGTGTGGCACGCTACCTGTCGAGAGATTGTGCGCCACTACAGCGCTGACGTCGCCCAATCTCTCTTGATTAAGGGTGGAAGTTGCGGGTTGCTGTTGTCCGTGGCAGTTGGGAGGCTCAGCTCGGGAGGGAGAAGAAGGGTGGGGAGGAGTTGCGGGGAAGGTGGGGTGGGTTTGTGTTTTTCGGAGTACCCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

130

Amino Acids

14.28

Weight (kDa)

9.17

Isoelectric Point (pI)

64.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35870
fragaria_vesca	FvH4_1g11170
malus_domestica	MD02G1124200.v1.1 MD15G1238200.v1.1
prunus_persica	Prupe.7G174200_v2.0.a1
pyrus_communis	pycom02g09710 pycom05g15420 pycom15g21190
rosa_chinensis	RchiOBHm_Chr2g0098461
rosa_laevigata	RLG00000016800
rosa_multiflora	Rmu_sc0010938.1_g000006
rosa_roxburghii	Rroxscaffold_2G00143940
rosa_rugosa	Rorug02G0073400
rosa_samantha	Rh2AG120700 Rh2DG125700
rosa_wichuraiana	Rw2G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	1 cut(s)	191
AciI	CCGC	7 cut(s)	96, 157, 160, 177, 191, 276, 345
AcyI	GRCGYC	2 cut(s)	42, 240
AfaI	GTAC	3 cut(s)	65, 80, 380
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	3 cut(s)	142, 184, 312
AluI	AGCT	3 cut(s)	142, 184, 312
Alw26I	GTCTC	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	313
Aor51HI	AGCGCT	1 cut(s)	235
AspLEI	GCGC	3 cut(s)	44, 225, 236
AvaI	CYCGRG	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	41
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	2 cut(s)	55, 82
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	2 cut(s)	45, 237
BisI	GCNGC	1 cut(s)	160
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	308
BsaHI	GRCGYC	2 cut(s)	42, 240
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	3 cut(s)	9, 176, 352
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	313
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	7 cut(s)	96, 157, 160, 177, 191, 276, 345
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	291
BssNI	GRCGYC	2 cut(s)	42, 240
Bst2UI	CCWGG	1 cut(s)	61
BstACI	GRCGYC	2 cut(s)	42, 240
BstC8I	GCNNGC	2 cut(s)	164, 201
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	2 cut(s)	45, 237
BstHHI	GCGC	3 cut(s)	44, 225, 236
BstMAI	GTCTC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 168, 231, 242
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	164, 201
CfoI	GCGC	3 cut(s)	44, 225, 236
CseI	GACGC	1 cut(s)	106
CsiI	ACCWGGT	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	64, 79, 379
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	5 cut(s)	142, 171, 184, 307, 312
CviKI_1	RGCY	5 cut(s)	142, 171, 184, 307, 312
CviQI	GTAC	3 cut(s)	64, 79, 379
DdeI	CTNAG	1 cut(s)	308
DinI	GGCGCC	1 cut(s)	43
EciI	GGCGGA	2 cut(s)	85, 166
Eco31I	GGTCTC	1 cut(s)	50
Eco47III	AGCGCT	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	59
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	1 cut(s)	166
FaiI	YATR	1 cut(s)	164
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	1 cut(s)	162
FauI	CCCGC	2 cut(s)	269, 338
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	160
GlaI	GCGC	3 cut(s)	43, 224, 235
GluI	GCNGC	1 cut(s)	160
GsaI	CCCAGC	1 cut(s)	171
HaeII	RGCGCY	2 cut(s)	45, 237
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	3 cut(s)	44, 225, 236
Hin1I	GRCGYC	2 cut(s)	42, 240
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	3 cut(s)	42, 223, 234
HinP1I	GCGC	3 cut(s)	42, 223, 234
Hpy188I	TCNGA	2 cut(s)	146, 376
Hpy188III	TCNNGA	3 cut(s)	212, 256, 315
Hpy99I	CGWCG	2 cut(s)	41, 245
HpyAV	CCTTC	3 cut(s)	92, 321, 344
HpyCH4IV	ACGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 168, 231, 242
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	2 cut(s)	42, 240
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	3 cut(s)	42, 223, 234
KasI	GGCGCC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	147, 189
LpnPI	CCDG	5 cut(s)	46, 73, 89, 181, 220
MabI	ACCWGGT	1 cut(s)	59
MaeII	ACGT	1 cut(s)	240
MboII	GAAGA	5 cut(s)	100, 103, 118, 124, 336
Mly113I	GGCGCC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	30, 197, 297, 311, 330
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	156, 168, 231, 242
NarI	GGCGCC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	161
PluTI	GGCGCC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	3 cut(s)	65, 80, 380
RsaNI	GTAC	3 cut(s)	64, 79, 379
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	9 cut(s)	53, 62, 84, 144, 186, 209, 243, 314, 355
SexAI	ACCWGGT	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	229
SfoI	GGCGCC	1 cut(s)	43
SphI	GCATGC	1 cut(s)	166
SsiI	CCGC	7 cut(s)	96, 157, 160, 177, 191, 276, 345
SspDI	GGCGCC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	59
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	102, 211
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TspDTI	ATGAA	3 cut(s)	17, 118, 124
TspGWI	ACGGA	2 cut(s)	12, 280
XceI	RCATGY	1 cut(s)	166
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.