Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015059

Physical Location & Seq

Genomic Coordinates Forward (+)

5860960 .. 5863201

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0073400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGTTCCATCTCTAATCGAGTTCACGACTTCCTCAAATCCACCAAACTCCGAACCCCAAATTAAGCTAAGCCCATCAATTCAGACCGTTGTAGATGAAATCCACAAGGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACCAACCAATGCAAGCTCGGGTCGACCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGGAACCACCCGAAAGGCGACATCTTGGACCGAATCGCCGCCGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTCCCTGCGGTTCCTCAAAGAGCGTCGCGCTGCTCGCTCCGGTGGTGCGGTTGGCACACGACGTCGTTTTGGATTTGTTTAAGAGGGAGTTGGGGGGGTTGAAGAAAGAGAAGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGAGGTTTATAAGTGTGTGCTGTTCTAGCAGGGATTCGGGTCAGGAGGAACCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTCGGGTTTAAGTTGCGTTTGGTTGAACAGAGATGAAAATGTTAGGAATTTGTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGCTTCGTGAGAGAGATGGGGATGTGAGTTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGGTGTTGGAGACAGAGTTGAGGACTTGGGCTGTTGGTTCCATTACTGGGTTCCAGAATGTTTACGTTTTCGATGTCCTTTTGAGGATGCTGCTGGAGAAGACTTTGCCTGTTACCTCCCTTTTGAGTTCTGAAGACGAAGTTTTGTTGAGGAAAGTGCTGTATGATGCCATCATATTAGTTGAATATTCTTTCCTTAATCCTGAGAAAGCAATTCACATATCTGCTGAGCACATGAAAATTATTGCCATGCGAAGATTGATTCTTGCGCATGAAGCAGTGGAGTATTTTAGGGAGCATGGTGATCAAAGGAGAAGCATCTCTTATACAACTGCATTTTCCGGTTCACAATTGTATTCCCAAATTGTTAAGTGGGTAAAGAATCAGATTCCTGTGGAGGATAGCTCAGTCAAATCAGAGGGAACCTCACCTAAAGCTCTTATAAAATGGCTTCTTAACCTTGAGCGTCAAGGCTTCTTAGCGTTTGGTGATAGTATCTTGAAGTATCATAGTCTTGATATGTCTAAACCACCAGCTTCGAAGTTAGACAGCAATGAAGTTGATGAAGACCCTATCTTCTACATCGATAACAAGAGGCGAGGAGAACATACAGATGATGGAAAAGTTAATGAATACATTAGTGCTGCATTTTTAGCTGCTGCTAATACAATGACATCAGCAGAGAAAAGAGGGAAAAAACGGAAAGGGGAAAACAGCGAGAGTGAAGAGGAGAGTTCACTCTCTGATGAGGACTCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

490

Amino Acids

54.71

Weight (kDa)

5.45

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35870
fragaria_vesca	FvH4_1g11170
malus_domestica	MD02G1124200.v1.1 MD15G1238200.v1.1
prunus_persica	Prupe.7G174200_v2.0.a1
pyrus_communis	pycom02g09710 pycom05g15420 pycom15g21190
rosa_chinensis	RchiOBHm_Chr2g0098461
rosa_laevigata	RLG00000016800
rosa_multiflora	Rmu_sc0010938.1_g000006
rosa_roxburghii	Rroxscaffold_2G00143940
rosa_rugosa	Rorug02G0073400
rosa_samantha	Rh2AG120700 Rh2DG125700
rosa_wichuraiana	Rw2G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	452, 1154
AatII	GACGTC	1 cut(s)	363
Acc16I	TGCGCA	1 cut(s)	981
AccI	GTMKAC	2 cut(s)	168, 195
AccII	CGCG	1 cut(s)	326
AciI	CCGC	6 cut(s)	173, 201, 258, 261, 306, 346
AcsI	RAATTY	2 cut(s)	424, 571
AcuI	CTGAAG	2 cut(s)	690, 864
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	759
AgsI	TTSAA	6 cut(s)	137, 400, 550, 688, 896, 1213
AluBI	AGCT	9 cut(s)	67, 161, 280, 299, 698, 1116, 1148, 1247, 1367
AluI	AGCT	9 cut(s)	67, 161, 280, 299, 698, 1116, 1148, 1247, 1367
Alw21I	GWGCWC	1 cut(s)	945
Alw26I	GTCTC	2 cut(s)	670, 716
Ama87I	CYCGRG	1 cut(s)	162
ApeKI	GCWGC	6 cut(s)	280, 328, 802, 1355, 1367, 1370
ApoI	RAATTY	2 cut(s)	424, 571
AspLEI	GCGC	2 cut(s)	328, 982
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	5 cut(s)	430, 610, 1025, 1131, 1211
AsuII	TTCGAA	1 cut(s)	1250
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	247
BbsI	GAAGAC	3 cut(s)	818, 852, 1284
Bbv12I	GWGCWC	1 cut(s)	945
BbvI	GCAGC	6 cut(s)	267, 315, 789, 1342, 1354, 1357
BccI	CCATC	6 cut(s)	16, 82, 194, 617, 890, 1322
BclI	TGATCA	1 cut(s)	1015
BcoDI	GTCTC	2 cut(s)	670, 716
BfaI	CTAG	1 cut(s)	468
BisI	GCNGC	8 cut(s)	258, 261, 281, 329, 803, 1356, 1368, 1371
BlpI	GCTNAGC	3 cut(s)	68, 295, 939
BlsI	GCNGC	8 cut(s)	259, 262, 282, 330, 804, 1357, 1369, 1372
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	8 cut(s)	6, 218, 224, 310, 492, 751, 764, 1135
BmrI	ACTGGG	1 cut(s)	768
BmsI	GCATC	3 cut(s)	789, 868, 1038
BmuI	ACTGGG	1 cut(s)	768
BpiI	GAAGAC	3 cut(s)	818, 852, 1284
BplI	GAGNNNNNCTC	4 cut(s)	1100, 1132, 1121, 1153
BpmI	CTGGAG	2 cut(s)	666, 827
Bpu1102I	GCTNAGC	3 cut(s)	68, 295, 939
Bpu14I	TTCGAA	1 cut(s)	1250
BpuEI	CTTGAG	1 cut(s)	1193
Bsa29I	ATCGAT	1 cut(s)	1296
BsaHI	GRCGYC	1 cut(s)	360
BsaWI	WCCGGW	2 cut(s)	337, 1052
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	1 cut(s)	759
Bse1I	ACTGG	1 cut(s)	763
Bse3DI	GCAATG	1 cut(s)	1270
BseCI	ATCGAT	1 cut(s)	1296
BseGI	GGATG	2 cut(s)	634, 804
BseLI	CCNNNNNNNGG	1 cut(s)	759
BseMI	GCAATG	1 cut(s)	1270
BseMII	CTCAG	5 cut(s)	309, 434, 906, 930, 1131
BseNI	ACTGG	1 cut(s)	763
BseRI	GAGGAG	4 cut(s)	277, 608, 1326, 1454
BseXI	GCAGC	6 cut(s)	267, 315, 789, 1342, 1354, 1357
BseYI	CCCAGC	1 cut(s)	698
Bsh1236I	CGCG	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	1296
BsiHKAI	GWGCWC	1 cut(s)	945
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	220, 338, 1053
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	1 cut(s)	759
BsmAI	GTCTC	2 cut(s)	670, 716
BsmFI	GGGAC	1 cut(s)	715
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	1250
Bsp1286I	GDGCHC	1 cut(s)	945
Bsp143I	GATC	1 cut(s)	1015
Bsp1720I	GCTNAGC	3 cut(s)	68, 295, 939
BspACI	CCGC	6 cut(s)	173, 201, 258, 261, 306, 346
BspCNI	CTCAG	5 cut(s)	308, 435, 907, 931, 1130
BspDI	ATCGAT	1 cut(s)	1296
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	8 cut(s)	6, 218, 224, 310, 492, 751, 764, 1135
BspT104I	TTCGAA	1 cut(s)	1250
BsrDI	GCAATG	1 cut(s)	1270
BsrI	ACTGG	1 cut(s)	763
BssMI	GATC	1 cut(s)	1015
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	2 cut(s)	88, 681
Bst6I	CTCTTC	1 cut(s)	1431
BstACI	GRCGYC	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	1250
BstC8I	GCNNGC	2 cut(s)	159, 333
BstDEI	CTNAG	7 cut(s)	68, 295, 443, 915, 939, 1117, 1189
BstF5I	GGATG	2 cut(s)	634, 804
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	328, 982
BstKTI	GATC	1 cut(s)	1018
BstMAI	GTCTC	2 cut(s)	670, 716
BstMBI	GATC	1 cut(s)	1015
BstMWI	GCNNNNNNNGC	5 cut(s)	332, 468, 690, 986, 1364
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	6 cut(s)	267, 315, 789, 1342, 1354, 1357
BstV2I	GAAGAC	3 cut(s)	818, 852, 1284
Bsu15I	ATCGAT	1 cut(s)	1296
BsuTUI	ATCGAT	1 cut(s)	1296
BtsCI	GGATG	2 cut(s)	634, 804
BtsI	GCAGTG	1 cut(s)	996
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	2 cut(s)	159, 333
CfoI	GCGC	2 cut(s)	328, 982
Cfr13I	GGNCC	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	1296
CseI	GACGC	2 cut(s)	310, 1166
CviAII	CATG	4 cut(s)	946, 961, 983, 1010
DdeI	CTNAG	7 cut(s)	68, 295, 443, 915, 939, 1117, 1189
DpnI	GATC	1 cut(s)	1017
DpnII	GATC	1 cut(s)	1015
Eam1104I	CTCTTC	1 cut(s)	1431
EarI	CTCTTC	1 cut(s)	1431
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	690, 864
Eco88I	CYCGRG	1 cut(s)	162
FaeI	CATG	4 cut(s)	949, 964, 986, 1013
FalI	AAGNNNNNCTT	2 cut(s)	1018, 1050
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	4 cut(s)	945, 960, 982, 1009
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	1015
FblI	GTMKAC	2 cut(s)	168, 195
Fnu4HI	GCNGC	8 cut(s)	258, 261, 281, 329, 803, 1356, 1368, 1371
FokI	GGATG	2 cut(s)	641, 811
Fsp4HI	GCNGC	8 cut(s)	258, 261, 281, 329, 803, 1356, 1368, 1371
FspBI	CTAG	1 cut(s)	468
FspI	TGCGCA	1 cut(s)	981
GlaI	GCGC	2 cut(s)	327, 981
GluI	GCNGC	8 cut(s)	258, 261, 281, 329, 803, 1356, 1368, 1371
GsaI	CCCAGC	1 cut(s)	702
GsuI	CTGGAG	2 cut(s)	666, 827
HapII	CCGG	3 cut(s)	220, 338, 1053
HgaI	GACGC	2 cut(s)	310, 1166
HhaI	GCGC	2 cut(s)	328, 982
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	949, 964, 986, 1013
Hin6I	GCGC	2 cut(s)	326, 980
HinP1I	GCGC	2 cut(s)	326, 980
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	3 cut(s)	220, 338, 1053
HphI	GGTGA	5 cut(s)	430, 610, 1025, 1131, 1211
Hpy166II	GTNNAC	6 cut(s)	24, 169, 196, 775, 1058, 1448
Hpy188I	TCNGA	9 cut(s)	52, 84, 216, 444, 844, 1098, 1129, 1456, 1468
Hpy188III	TCNNGA	8 cut(s)	25, 179, 485, 614, 766, 914, 1210, 1226
Hpy8I	GTNNAC	6 cut(s)	24, 169, 196, 775, 1058, 1448
Hpy99I	CGWCG	3 cut(s)	326, 362, 365
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	88, 681
HpyCH4IV	ACGT	2 cut(s)	360, 777
HpyCH4V	TGCA	5 cut(s)	157, 659, 693, 1046, 1358
HpyF10VI	GCNNNNNNNGC	5 cut(s)	332, 468, 690, 986, 1364
HpyF3I	CTNAG	7 cut(s)	68, 295, 443, 915, 939, 1117, 1189
HpySE526I	ACGT	2 cut(s)	360, 777
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	949, 964, 986, 1013
HspAI	GCGC	2 cut(s)	326, 980
Ksp22I	TGATCA	1 cut(s)	1015
Kzo9I	GATC	1 cut(s)	1015
LmnI	GCTCC	4 cut(s)	216, 304, 340, 1006
Lsp1109I	GCAGC	6 cut(s)	267, 315, 789, 1342, 1354, 1357
LweI	GCATC	3 cut(s)	789, 868, 1038
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	360, 777
MaeIII	GTNAC	3 cut(s)	576, 635, 823
MalI	GATC	1 cut(s)	1017
MboI	GATC	1 cut(s)	1015
MboII	GAAGA	9 cut(s)	412, 421, 433, 823, 857, 978, 1279, 1289, 1448
MfeI	CAATTG	1 cut(s)	1061
MhlI	GDGCHC	1 cut(s)	945
MlyI	GAGTC	1 cut(s)	1457
MmeI	TCCRAC	1 cut(s)	699
MseI	TTAA	7 cut(s)	63, 378, 533, 909, 1080, 1167, 1338
MslI	CAYNNNNRTG	1 cut(s)	1323
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	3 cut(s)	220, 338, 1053
MunI	CAATTG	1 cut(s)	1061
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	5 cut(s)	332, 468, 690, 986, 1364
NdeII	GATC	1 cut(s)	1015
NlaIII	CATG	4 cut(s)	949, 964, 986, 1013
NlaIV	GGNNCC	8 cut(s)	6, 218, 224, 310, 492, 751, 764, 1135
NsbI	TGCGCA	1 cut(s)	981
NspV	TTCGAA	1 cut(s)	1250
PfeI	GAWTC	9 cut(s)	133, 182, 252, 439, 476, 503, 973, 1093, 1099
PkrI	GCNGC	8 cut(s)	259, 262, 282, 330, 804, 1357, 1369, 1372
PleI	GAGTC	1 cut(s)	1457
PpsI	GAGTC	1 cut(s)	1457
PsiI	TTATAA	2 cut(s)	452, 1154
PspFI	CCCAGC	1 cut(s)	698
PspN4I	GGNNCC	8 cut(s)	6, 218, 224, 310, 492, 751, 764, 1135
PspPI	GGNCC	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	1323
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	7 cut(s)	63, 378, 533, 909, 1080, 1167, 1338
SatI	GCNGC	8 cut(s)	258, 261, 281, 329, 803, 1356, 1368, 1371
Sau3AI	GATC	1 cut(s)	1015
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	1457
SduI	GDGCHC	1 cut(s)	945
SfaNI	GCATC	3 cut(s)	789, 868, 1038
SfuI	TTCGAA	1 cut(s)	1250
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	1323
SmlI	CTYRAG	1 cut(s)	1172
SmoI	CTYRAG	1 cut(s)	1172
SsiI	CCGC	6 cut(s)	173, 201, 258, 261, 306, 346
SspI	AATATT	1 cut(s)	899
SspMI	CTAG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	88, 681
TaiI	ACGT	2 cut(s)	363, 780
TaqI	TCGA	7 cut(s)	18, 168, 180, 506, 783, 1250, 1296
TaqII	GACCGA	1 cut(s)	264
TauI	GCSGC	2 cut(s)	260, 263
TfiI	GAWTC	9 cut(s)	133, 182, 252, 439, 476, 503, 973, 1093, 1099
Tru1I	TTAA	7 cut(s)	63, 378, 533, 909, 1080, 1167, 1338
Tru9I	TTAA	7 cut(s)	63, 378, 533, 909, 1080, 1167, 1338
TscAI	CASTG	1 cut(s)	996
TseI	GCWGC	6 cut(s)	280, 328, 802, 1355, 1367, 1370
TspDTI	ATGAA	7 cut(s)	111, 573, 962, 999, 1281, 1290, 1356
TspGWI	ACGGA	1 cut(s)	1426
TspRI	CASTG	1 cut(s)	996
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	424, 571
XmiI	GTMKAC	2 cut(s)	168, 195
XspI	CTAG	1 cut(s)	468
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.