Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013367

Physical Location & Seq

Genomic Coordinates Forward (+)

20320309 .. 20323285

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTACTCAAGGTCAAGTGATCACTTGCAAAGCGGCGGTGGCCTGGGAACCCAATAAGCCGTTGGTGATCGAAGACGTGCAGGTGGCTCCGCCGCAGGCCGGAGAGGTCCGCGTCAAGATTCTCTACACCGCTCTCTGCCACACCGACGCTTATACCTGGGGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATTCTTGGTCACGAGGCTGCAGGTATTGTTGAGAGCGTGGGTGAAGGTGTTACTATAGTTCAGCCAGGAGACCATGTCATCCCTTGTTACCAGGCAGAATGCGGAGAATGCAAGTTTTGCAAATCAGGGAAGACAAATCTTTGTGGGAAAGTACGTGCTGCCACTGGAGTTGGAGTCATGATGAGTGATCGCAAAAGCCGTTTCTCTATAAACGGAAAACCTATCTATCATTTTATGGGAACATCAACGTTTAGCCAGTACACAGTTGTTCATGATGTTAGTGTTGCAAAGATAGACCCAAAAGCTCCATTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTCCTACTGGTCTTGGAGCTGTTTGGAACACAGCAAAGGTAGAAGCGGGATCGATCCTTGCTATTTTTGGCCTTGGGACTGTTGGTCTTGCTGTTGCAGAAGGTGCCAAAACAGCTGGTGCATCGCGGATCATTGGCATTGATATTGACAGCAAAAAGTTTGATACAGCAAAGAAATTTGGAGTTACCGAATTTGTGAATCCAAAGGACCACGAGAAGCCAATCCAACAAGTCCTTGTTGATCTCACTGATGGTGGTGTTGACTACAGTTTTGAGTGCATTGGAAATGTCTCGGTGATGAGGGCTGCCTTGGAGTGCTGCCACAAGGGCTGGGGAACATCTGTTATTGTTGGTGTTGCGGCATCAGGGCAGGAGATCTCTACTCGTCCTTTTCAGTTGGTGACCGGTCGTGTGTGGAAAGGAACAGCCTTTGGTGGTTTCAAGAGCCGCTCGCAGGTGCCATGGCTTGTAGAAAAGTACTTGAAGAAGGAAATCAAAGTTGATGAATACATCACCCACACTTTGACTCTTGGTGAGATCAACAAAGCATTCGATCTGATGCATGAAGGGGGATGCCTCCGGTGTGTGCTTTCTACCGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

380

Amino Acids

40.43

Weight (kDa)

7.07

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43940 AT5G43940
fragaria_vesca	FvH4_2g20240
malus_domestica	MD05G1186000.v1.1 MD10G1174100.v1.1
prunus_persica	Prupe.8G212700_v2.0.a1
pyrus_communis	pycom05g17060 pycom10g15010
rosa_chinensis	RchiOBHm_Chr6g0286011
rosa_laevigata	RLG00000012590
rosa_multiflora	Rmu_sc0019472.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182530
rosa_rugosa	Rorug06G0178200
rosa_samantha	Rh6AG290200 Rh6BG292200 Rh6CG293200 Rh6DG285300
rosa_wichuraiana	Rw6G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	73, 979
Acc36I	ACCTGC	3 cut(s)	73, 206, 979
AccB1I	GGYRCC	2 cut(s)	638, 991
AccBSI	CCGCTC	2 cut(s)	134, 984
AccII	CGCG	2 cut(s)	114, 661
AclI	AACGTT	1 cut(s)	443
AclWI	GGATC	5 cut(s)	167, 180, 583, 592, 671
AcsI	RAATTY	2 cut(s)	710, 725
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	3 cut(s)	348, 455, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	101, 988
AgeI	ACCGGT	1 cut(s)	938
AgsI	TTSAA	2 cut(s)	976, 1018
AhdI	GACNNNNNGTC	1 cut(s)	618
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	4 cut(s)	44, 158, 259, 285
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	3 cut(s)	500, 554, 650
AluI	AGCT	3 cut(s)	500, 554, 650
Alw26I	GTCTC	3 cut(s)	188, 258, 829
AlwI	GGATC	5 cut(s)	167, 180, 583, 592, 671
AoxI	GGCC	3 cut(s)	42, 99, 604
ApeKI	GCWGC	4 cut(s)	212, 353, 839, 852
ApoI	RAATTY	2 cut(s)	710, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
AsiGI	ACCGGT	1 cut(s)	938
AspS9I	GGNCC	2 cut(s)	109, 742
AsuHPI	GGTGA	6 cut(s)	79, 248, 841, 946, 1039, 1079
AvaII	GGWCC	2 cut(s)	109, 742
BamHI	GGATCC	1 cut(s)	172
BanI	GGYRCC	2 cut(s)	638, 991
BauI	CACGAG	2 cut(s)	206, 746
BbsI	GAAGAC	3 cut(s)	81, 332, 512
BbvI	GCAGC	4 cut(s)	199, 340, 826, 839
BccI	CCATC	1 cut(s)	779
BceAI	ACGGC	2 cut(s)	46, 378
BciT130I	CCWGG	4 cut(s)	46, 160, 261, 287
BclI	TGATCA	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	188, 258, 829
BfmI	CTRYAG	3 cut(s)	213, 249, 799
BfuAI	ACCTGC	3 cut(s)	73, 206, 979
BglI	GCCNNNNNGGC	1 cut(s)	861
BglII	AGATCT	1 cut(s)	909
BisI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
BlsI	GCNGC	9 cut(s)	37, 96, 167, 214, 355, 841, 854, 895, 983
BmcAI	AGTACT	1 cut(s)	1013
Bme1390I	CCNGG	4 cut(s)	46, 160, 261, 287
Bme18I	GGWCC	2 cut(s)	109, 742
BmeRI	GACNNNNNGTC	1 cut(s)	618
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	109, 742
BmiI	GGNNCC	5 cut(s)	51, 90, 174, 640, 993
BmrFI	CCNGG	4 cut(s)	46, 160, 261, 287
BmsI	GCATC	5 cut(s)	665, 905, 1083, 1097, 1123
BpiI	GAAGAC	3 cut(s)	81, 332, 512
BpmI	CTGGAG	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	587
BsaAI	YACGTR	1 cut(s)	350
BsaI	GGTCTC	2 cut(s)	188, 258
BsaJI	CCNNGG	5 cut(s)	45, 159, 607, 843, 995
BsaWI	WCCGGW	2 cut(s)	938, 1113
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 988
Bse118I	RCCGGY	1 cut(s)	938
Bse1I	ACTGG	3 cut(s)	364, 451, 547
BseBI	CCWGG	4 cut(s)	46, 160, 261, 287
BseCI	ATCGAT	1 cut(s)	587
BseDI	CCNNGG	5 cut(s)	45, 159, 607, 843, 995
BseGI	GGATG	3 cut(s)	273, 533, 1112
BseLI	CCNNNNNNNGG	2 cut(s)	101, 988
BseNI	ACTGG	3 cut(s)	364, 451, 547
BseXI	GCAGC	4 cut(s)	199, 340, 826, 839
BseYI	CCCAGC	1 cut(s)	864
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	114, 661
Bsh1285I	CGRYCG	1 cut(s)	943
BshFI	GGCC	3 cut(s)	44, 101, 606
BshNI	GGYRCC	2 cut(s)	638, 991
BshTI	ACCGGT	1 cut(s)	938
BshVI	ATCGAT	1 cut(s)	587
BsiEI	CGRYCG	1 cut(s)	943
BsiSI	CCGG	3 cut(s)	102, 939, 1114
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	2 cut(s)	101, 988
BsmAI	GTCTC	3 cut(s)	188, 258, 829
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	3 cut(s)	299, 308, 1082
BsnI	GGCC	3 cut(s)	44, 101, 606
Bso31I	GGTCTC	2 cut(s)	188, 258
Bsp19I	CCATGG	1 cut(s)	995
BspANI	GGCC	3 cut(s)	44, 101, 606
BspDI	ATCGAT	1 cut(s)	587
BspFNI	CGCG	2 cut(s)	114, 661
BspHI	TCATGA	2 cut(s)	372, 466
BspLI	GGNNCC	5 cut(s)	51, 90, 174, 640, 993
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	3 cut(s)	73, 206, 979
BspPI	GGATC	5 cut(s)	167, 180, 583, 592, 671
BspT107I	GGYRCC	2 cut(s)	638, 991
BspTNI	GGTCTC	2 cut(s)	188, 258
BsrBI	CCGCTC	2 cut(s)	134, 984
BsrFI	RCCGGY	1 cut(s)	938
BsrI	ACTGG	3 cut(s)	364, 451, 547
BssAI	RCCGGY	1 cut(s)	938
BssECI	CCNNGG	5 cut(s)	45, 159, 607, 843, 995
BssSI	CACGAG	2 cut(s)	206, 746
BssT1I	CCWWGG	3 cut(s)	607, 843, 995
Bst2BI	CACGAG	2 cut(s)	206, 746
Bst2UI	CCWGG	4 cut(s)	46, 160, 261, 287
Bst4CI	ACNGT	3 cut(s)	460, 616, 803
Bst6I	CTCTTC	1 cut(s)	191
BstAPI	GCANNNNNTGC	2 cut(s)	312, 638
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	99, 986
BstDSI	CCRYGG	1 cut(s)	995
BstEII	GGTNACC	1 cut(s)	934
BstF5I	GGATG	3 cut(s)	273, 533, 1112
BstFNI	CGCG	2 cut(s)	114, 661
BstMAI	GTCTC	3 cut(s)	188, 258, 829
BstMCI	CGRYCG	1 cut(s)	943
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 303, 312, 638, 647, 861
BstNI	CCWGG	4 cut(s)	46, 160, 261, 287
BstPI	GGTNACC	1 cut(s)	934
BstSCI	CCNGG	4 cut(s)	44, 158, 259, 285
BstSFI	CTRYAG	3 cut(s)	213, 249, 799
BstUI	CGCG	2 cut(s)	114, 661
BstV1I	GCAGC	4 cut(s)	199, 340, 826, 839
BstV2I	GAAGAC	3 cut(s)	81, 332, 512
BstX2I	RGATCY	2 cut(s)	172, 909
BstYI	RGATCY	2 cut(s)	172, 909
Bsu15I	ATCGAT	1 cut(s)	587
BsuRI	GGCC	3 cut(s)	44, 101, 606
BsuTUI	ATCGAT	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	995
BtgZI	GCGATG	1 cut(s)	642
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	273, 533, 1112
BtsIMutI	CAGTG	2 cut(s)	357, 780
BveI	ACCTGC	3 cut(s)	73, 206, 979
Cac8I	GCNNGC	2 cut(s)	99, 986
CciI	TCATGA	2 cut(s)	372, 466
Cfr10I	RCCGGY	1 cut(s)	938
Cfr13I	GGNCC	2 cut(s)	109, 742
ClaI	ATCGAT	1 cut(s)	587
CseI	GACGC	2 cut(s)	103, 158
Csp6I	GTAC	3 cut(s)	347, 454, 1012
CspAI	ACCGGT	1 cut(s)	938
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	6 cut(s)	269, 373, 467, 996, 1097, 1137
CviQI	GTAC	3 cut(s)	347, 454, 1012
DriI	GACNNNNNGTC	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	191
Eam1105I	GACNNNNNGTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	3 cut(s)	607, 843, 995
Eco31I	GGTCTC	2 cut(s)	188, 258
Eco47I	GGWCC	2 cut(s)	109, 742
Eco57I	CTGAAG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	934
EcoO65I	GGTNACC	1 cut(s)	934
EcoRII	CCWGG	4 cut(s)	44, 158, 259, 285
EcoT14I	CCWWGG	3 cut(s)	607, 843, 995
EcoT22I	ATGCAT	2 cut(s)	1098, 1138
ErhI	CCWWGG	3 cut(s)	607, 843, 995
FaeI	CATG	6 cut(s)	272, 376, 470, 999, 1100, 1140
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	6 cut(s)	268, 372, 466, 995, 1096, 1136
FauI	CCCGC	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	21
Fnu4HI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
FokI	GGATG	3 cut(s)	260, 540, 1119
Fsp4HI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
GluI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
GsaI	CCCAGC	1 cut(s)	868
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	44, 101, 606
HapII	CCGG	3 cut(s)	102, 939, 1114
HgaI	GACGC	2 cut(s)	103, 158
Hin1II	CATG	6 cut(s)	272, 376, 470, 999, 1100, 1140
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	4 cut(s)	121, 369, 733, 1060
HpaII	CCGG	3 cut(s)	102, 939, 1114
HphI	GGTGA	6 cut(s)	79, 248, 841, 946, 1039, 1079
Hpy166II	GTNNAC	2 cut(s)	456, 796
Hpy188I	TCNGA	1 cut(s)	1092
Hpy188III	TCNNGA	6 cut(s)	118, 176, 206, 373, 467, 976
Hpy8I	GTNNAC	2 cut(s)	456, 796
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	5 cut(s)	173, 233, 629, 1015, 1094
HpyCH4III	ACNGT	3 cut(s)	460, 616, 803
HpyCH4IV	ACGT	3 cut(s)	78, 349, 443
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 303, 312, 638, 647, 861
HpySE526I	ACGT	3 cut(s)	78, 349, 443
Hsp92II	CATG	6 cut(s)	272, 376, 470, 999, 1100, 1140
Ksp22I	TGATCA	1 cut(s)	21
LmnI	GCTCC	3 cut(s)	94, 505, 551
Lsp1109I	GCAGC	4 cut(s)	199, 340, 826, 839
LweI	GCATC	5 cut(s)	665, 905, 1083, 1097, 1123
MaeII	ACGT	3 cut(s)	78, 349, 443
MaeIII	GTNAC	5 cut(s)	203, 244, 281, 718, 934
MbiI	CCGCTC	2 cut(s)	134, 984
MboII	GAAGA	5 cut(s)	86, 178, 337, 512, 1030
MflI	RGATCY	2 cut(s)	172, 909
MluCI	AATT	2 cut(s)	710, 725
MlyI	GAGTC	2 cut(s)	378, 1054
MmeI	TCCRAC	2 cut(s)	346, 784
MnlI	CCTC	4 cut(s)	100, 202, 828, 1121
Mph1103I	ATGCAT	2 cut(s)	1098, 1138
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	3 cut(s)	102, 939, 1114
MspR9I	CCNGG	4 cut(s)	46, 160, 261, 287
Mva1269I	GAATGC	3 cut(s)	299, 308, 1082
MvaI	CCWGG	4 cut(s)	46, 160, 261, 287
MvnI	CGCG	2 cut(s)	114, 661
MwoI	GCNNNNNNNGC	6 cut(s)	41, 303, 312, 638, 647, 861
NcoI	CCATGG	1 cut(s)	995
NlaIII	CATG	6 cut(s)	272, 376, 470, 999, 1100, 1140
NlaIV	GGNNCC	5 cut(s)	51, 90, 174, 640, 993
NmuCI	GTSAC	2 cut(s)	203, 934
NsiI	ATGCAT	2 cut(s)	1098, 1138
PagI	TCATGA	2 cut(s)	372, 466
PaqCI	CACCTGC	2 cut(s)	73, 979
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PctI	GAATGC	3 cut(s)	299, 308, 1082
PfeI	GAWTC	2 cut(s)	121, 733
PflFI	GACNNNGTC	1 cut(s)	269
PinAI	ACCGGT	1 cut(s)	938
PkrI	GCNGC	9 cut(s)	37, 96, 167, 214, 355, 841, 854, 895, 983
PleI	GAGTC	2 cut(s)	377, 1054
PpsI	GAGTC	2 cut(s)	377, 1054
Ppu21I	YACGTR	1 cut(s)	350
Psp1406I	AACGTT	1 cut(s)	443
Psp6I	CCWGG	4 cut(s)	44, 158, 259, 285
PspEI	GGTNACC	1 cut(s)	934
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	4 cut(s)	44, 158, 259, 285
PspN4I	GGNNCC	5 cut(s)	51, 90, 174, 640, 993
PspPI	GGNCC	2 cut(s)	109, 742
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	172, 909
PsyI	GACNNNGTC	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	3 cut(s)	348, 455, 1013
RsaNI	GTAC	3 cut(s)	347, 454, 1012
SatI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
Sau96I	GGNCC	2 cut(s)	109, 742
ScaI	AGTACT	1 cut(s)	1013
SchI	GAGTC	2 cut(s)	378, 1054
ScrFI	CCNGG	4 cut(s)	46, 160, 261, 287
SfaNI	GCATC	5 cut(s)	665, 905, 1083, 1097, 1123
SfcI	CTRYAG	3 cut(s)	213, 249, 799
SinI	GGWCC	2 cut(s)	109, 742
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	710, 725
StyD4I	CCNGG	4 cut(s)	44, 158, 259, 285
StyI	CCWWGG	3 cut(s)	607, 843, 995
TaaI	ACNGT	3 cut(s)	460, 616, 803
TaiI	ACGT	3 cut(s)	81, 352, 446
TaqI	TCGA	3 cut(s)	72, 587, 1086
TasI	AATT	2 cut(s)	710, 725
TatI	WGTACW	2 cut(s)	453, 1011
TauI	GCSGC	5 cut(s)	38, 97, 168, 896, 984
TfiI	GAWTC	2 cut(s)	121, 733
TscAI	CASTG	2 cut(s)	364, 787
TseFI	GTSAC	2 cut(s)	203, 934
TseI	GCWGC	4 cut(s)	212, 353, 839, 852
Tsp45I	GTSAC	2 cut(s)	203, 934
TspDTI	ATGAA	3 cut(s)	455, 1053, 1113
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	364, 787
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	109, 742
XapI	RAATTY	2 cut(s)	710, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	1013
Zsp2I	ATGCAT	2 cut(s)	1098, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.