Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013367

Physical Location & Seq

Genomic Coordinates Forward (+)

51773638 .. 51776913

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCGACCCAAGGTCAAGTCATCACCTGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTTATCGAAGACGTCCAGGTGGCTCCGCCGCAGGCCGGAGAGGTCCGCGTCAAGATTCTCTACACCGCTCTCTGCCACACCGACGCTTACACCTGGGGCGGCAAGGACCCTGAAGGTCTCTTCCCTTGTATTCTTGGTCATGAGGCTGCAGGGATTGTTGAGAGTGTTGGTGAAGGTGTTACTGACGTTCAGGCAGGAGACCATGTCATCCCTTGTTACCAGGCTGAATGCGGAGAATGCAAGTTTTGCAAATCCGGGAAGACGAATCTCTGTGGAAAAGTACGTGCTGCCACTGGAGTTGGAGTCATGATGAGTGATCGTCAGAGCCGTTTCTCTATAAATGGAAAGCCTATTTACCATTTTATGGGAACCTCGACATTTAGCCAGTACACTGTTGTTCATGATGTTAGCGTTGCAAAAATAGATCCAAAAGCTCCTTTGGAGAAAGTATGCCTTCTCGGATGTGGTGTTCCTACTGGTCTTGGGGCCGTTTGGAACACAGCAAAAGTAGAAGCAGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGTCTTGCAGTTGCCGAGGGTGCCAAAACAGCTGGTGCATCACGAATAATTGGCATTGACATCGATAGCAAGAAGTTTGATACAGCAAAGAACTTTGGAGTTACTGAATTTGTGAATCCAAAGGACCATGAGAAGCCAATCCAACAGGTCCTAGTTGATCTCACTGATGGTGGTGTTGACTATAGCTTTGAGTGCATTGGGAATGTCTCAGTGATGAGGGCTGCCTTGGAGTGCTGCCACAAGGGCTGGGGAACATCAGTTATTGTAGGTGTTGCGGCATCAGGGCAGGAGATATCAACTCGTCCTTTTCAGCTGGTGACTGGTCGTGTGTGGAAGGGAACAGCCTTTGGTGGTTTCAAGAGCCGCTCACAGGTGCCTTGGCTTGTAGAGAAGTACTTGAAGAAGGAAATCAAAGTTGATGAATACATCACCCACACTTTGACCCTTGGGGAAATTAACAAGGCATTTGATTTGATGCATGAAGGGGGATGCCTCCGGTGTGTGCTTTCTACAGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

379

Amino Acids

40.39

Weight (kDa)

6.32

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	34 - 163	4.9e-22	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	206 - 334	1.5e-25	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43940 AT5G43940
fragaria_vesca	FvH4_2g20240
malus_domestica	MD05G1186000.v1.1 MD10G1174100.v1.1
prunus_persica	Prupe.8G212700_v2.0.a1
pyrus_communis	pycom05g17060 pycom10g15010
rosa_chinensis	RchiOBHm_Chr6g0286011
rosa_laevigata	RLG00000012590
rosa_multiflora	Rmu_sc0019472.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182530
rosa_rugosa	Rorug06G0178200
rosa_samantha	Rh6AG290200 Rh6BG292200 Rh6CG293200 Rh6DG285300
rosa_wichuraiana	Rw6G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	2 cut(s)	638, 991
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccBSI	CCGCTC	2 cut(s)	134, 984
AccII	CGCG	1 cut(s)	114
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	348, 455, 1013
AfiI	CCNNNNNNNGG	3 cut(s)	101, 430, 988
AgsI	TTSAA	2 cut(s)	976, 1018
AhdI	GACNNNNNGTC	1 cut(s)	12
AjnI	CCWGG	4 cut(s)	44, 81, 158, 285
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	500, 650, 804, 931
AluI	AGCT	4 cut(s)	500, 650, 804, 931
Alw26I	GTCTC	3 cut(s)	188, 258, 829
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	4 cut(s)	42, 99, 552, 604
ApeKI	GCWGC	4 cut(s)	212, 353, 839, 852
ApoI	RAATTY	1 cut(s)	725
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
AspS9I	GGNCC	5 cut(s)	109, 172, 552, 742, 766
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	4 cut(s)	16, 248, 946, 1039
AvaII	GGWCC	4 cut(s)	109, 172, 742, 766
BanI	GGYRCC	2 cut(s)	638, 991
BbsI	GAAGAC	2 cut(s)	81, 332
BbvI	GCAGC	4 cut(s)	199, 340, 826, 839
BccI	CCATC	1 cut(s)	779
BceAI	ACGGC	2 cut(s)	378, 539
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BciT130I	CCWGG	4 cut(s)	46, 83, 160, 287
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	188, 258, 829
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	3 cut(s)	213, 799, 1128
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	861
BisI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
BlsI	GCNGC	9 cut(s)	37, 96, 167, 214, 355, 841, 854, 895, 983
BmcAI	AGTACT	1 cut(s)	1013
Bme1390I	CCNGG	5 cut(s)	46, 83, 160, 287, 322
Bme18I	GGWCC	4 cut(s)	109, 172, 742, 766
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmgT120I	GGNCC	5 cut(s)	109, 172, 552, 742, 766
BmiI	GGNNCC	7 cut(s)	51, 90, 174, 436, 553, 640, 993
BmrFI	CCNGG	5 cut(s)	46, 83, 160, 287, 322
BmsI	GCATC	4 cut(s)	665, 905, 1083, 1097
BpiI	GAAGAC	2 cut(s)	81, 332
BpmI	CTGGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	2 cut(s)	188, 258
BsaJI	CCNNGG	8 cut(s)	10, 45, 159, 607, 633, 843, 995, 1063
BsaWI	WCCGGW	1 cut(s)	1113
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 430, 988
Bse1I	ACTGG	4 cut(s)	364, 451, 547, 943
BseBI	CCWGG	4 cut(s)	46, 83, 160, 287
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	8 cut(s)	10, 45, 159, 607, 633, 843, 995, 1063
BseGI	GGATG	3 cut(s)	273, 533, 1112
BseLI	CCNNNNNNNGG	3 cut(s)	101, 430, 988
BseMII	CTCAG	1 cut(s)	840
BseNI	ACTGG	4 cut(s)	364, 451, 547, 943
BseXI	GCAGC	4 cut(s)	199, 340, 826, 839
BseYI	CCCAGC	1 cut(s)	864
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	44, 101, 554, 606
BshNI	GGYRCC	2 cut(s)	638, 991
BshVI	ATCGAT	1 cut(s)	681
BsiSI	CCGG	3 cut(s)	102, 321, 1114
BslI	CCNNNNNNNGG	3 cut(s)	101, 430, 988
BsmAI	GTCTC	3 cut(s)	188, 258, 829
BsmI	GAATGC	2 cut(s)	299, 308
BsnI	GGCC	4 cut(s)	44, 101, 554, 606
Bso31I	GGTCTC	2 cut(s)	188, 258
Bsp143I	GATC	3 cut(s)	382, 490, 775
BspANI	GGCC	4 cut(s)	44, 101, 554, 606
BspCNI	CTCAG	1 cut(s)	839
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	3 cut(s)	205, 372, 466
BspLI	GGNNCC	7 cut(s)	51, 90, 174, 436, 553, 640, 993
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	485
BspT107I	GGYRCC	2 cut(s)	638, 991
BspTNI	GGTCTC	2 cut(s)	188, 258
BsrBI	CCGCTC	2 cut(s)	134, 984
BsrI	ACTGG	4 cut(s)	364, 451, 547, 943
BssECI	CCNNGG	8 cut(s)	10, 45, 159, 607, 633, 843, 995, 1063
BssMI	GATC	3 cut(s)	382, 490, 775
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	5 cut(s)	10, 607, 843, 995, 1063
Bst2UI	CCWGG	4 cut(s)	46, 83, 160, 287
Bst4CI	ACNGT	2 cut(s)	460, 616
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	826
BstF5I	GGATG	3 cut(s)	273, 533, 1112
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	385, 493, 778
BstMAI	GTCTC	3 cut(s)	188, 258, 829
BstMBI	GATC	3 cut(s)	382, 490, 775
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 303, 312, 638, 647, 810, 861
BstNI	CCWGG	4 cut(s)	46, 83, 160, 287
BstSCI	CCNGG	5 cut(s)	44, 81, 158, 285, 320
BstSFI	CTRYAG	3 cut(s)	213, 799, 1128
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	4 cut(s)	199, 340, 826, 839
BstV2I	GAAGAC	2 cut(s)	81, 332
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	4 cut(s)	44, 101, 554, 606
BsuTUI	ATCGAT	1 cut(s)	681
BtsCI	GGATG	3 cut(s)	273, 533, 1112
BtsIMutI	CAGTG	4 cut(s)	357, 456, 780, 834
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	3 cut(s)	205, 372, 466
Cfr13I	GGNCC	5 cut(s)	109, 172, 552, 742, 766
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	2 cut(s)	103, 158
Csp6I	GTAC	3 cut(s)	347, 454, 1012
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	6 cut(s)	206, 269, 373, 467, 746, 1097
CviQI	GTAC	3 cut(s)	347, 454, 1012
DdeI	CTNAG	1 cut(s)	826
DpnI	GATC	3 cut(s)	384, 492, 777
DpnII	GATC	3 cut(s)	382, 490, 775
DriI	GACNNNNNGTC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	191
Eam1105I	GACNNNNNGTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	5 cut(s)	10, 607, 843, 995, 1063
Eco31I	GGTCTC	2 cut(s)	188, 258
Eco32I	GATATC	1 cut(s)	912
Eco47I	GGWCC	4 cut(s)	109, 172, 742, 766
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	2 cut(s)	172, 766
EcoRII	CCWGG	4 cut(s)	44, 81, 158, 285
EcoRV	GATATC	1 cut(s)	912
EcoT14I	CCWWGG	5 cut(s)	10, 607, 843, 995, 1063
EcoT22I	ATGCAT	1 cut(s)	1098
ErhI	CCWWGG	5 cut(s)	10, 607, 843, 995, 1063
FaeI	CATG	6 cut(s)	209, 272, 376, 470, 749, 1100
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	6 cut(s)	205, 268, 372, 466, 745, 1096
Fnu4HI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
FokI	GGATG	3 cut(s)	260, 540, 1119
Fsp4HI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
FspBI	CTAG	1 cut(s)	770
GluI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
GsaI	CCCAGC	1 cut(s)	868
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	44, 101, 554, 606
HapII	CCGG	3 cut(s)	102, 321, 1114
HgaI	GACGC	2 cut(s)	103, 158
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	6 cut(s)	209, 272, 376, 470, 749, 1100
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	4 cut(s)	121, 331, 369, 733
HpaII	CCGG	3 cut(s)	102, 321, 1114
HphI	GGTGA	4 cut(s)	16, 248, 946, 1039
Hpy166II	GTNNAC	2 cut(s)	456, 796
Hpy188I	TCNGA	2 cut(s)	390, 527
Hpy188III	TCNNGA	6 cut(s)	118, 206, 373, 467, 660, 976
Hpy8I	GTNNAC	2 cut(s)	456, 796
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	6 cut(s)	173, 233, 530, 946, 1015, 1094
HpyCH4III	ACNGT	2 cut(s)	460, 616
HpyCH4IV	ACGT	3 cut(s)	78, 252, 349
HpyCH4V	TGCA	9 cut(s)	30, 215, 306, 315, 482, 626, 656, 813, 1096
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 303, 312, 638, 647, 810, 861
HpyF3I	CTNAG	1 cut(s)	826
HpySE526I	ACGT	3 cut(s)	78, 252, 349
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	6 cut(s)	209, 272, 376, 470, 749, 1100
Kzo9I	GATC	3 cut(s)	382, 490, 775
LmnI	GCTCC	2 cut(s)	94, 505
Lsp1109I	GCAGC	4 cut(s)	199, 340, 826, 839
LweI	GCATC	4 cut(s)	665, 905, 1083, 1097
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	3 cut(s)	78, 252, 349
MaeIII	GTNAC	4 cut(s)	244, 281, 718, 934
MalI	GATC	3 cut(s)	384, 492, 777
MbiI	CCGCTC	2 cut(s)	134, 984
MboI	GATC	3 cut(s)	382, 490, 775
MboII	GAAGA	4 cut(s)	86, 178, 337, 1030
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	4 cut(s)	588, 666, 725, 1071
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	2 cut(s)	346, 784
MnlI	CCTC	6 cut(s)	100, 202, 448, 628, 828, 1121
Mph1103I	ATGCAT	1 cut(s)	1098
MseI	TTAA	1 cut(s)	1074
MspA1I	CMGCKG	2 cut(s)	650, 931
MspI	CCGG	3 cut(s)	102, 321, 1114
MspR9I	CCNGG	5 cut(s)	46, 83, 160, 287, 322
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	2 cut(s)	299, 308
MvaI	CCWGG	4 cut(s)	46, 83, 160, 287
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	7 cut(s)	41, 303, 312, 638, 647, 810, 861
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	382, 490, 775
NlaIII	CATG	6 cut(s)	209, 272, 376, 470, 749, 1100
NlaIV	GGNNCC	7 cut(s)	51, 90, 174, 436, 553, 640, 993
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	934
NsiI	ATGCAT	1 cut(s)	1098
PagI	TCATGA	3 cut(s)	205, 372, 466
PaqCI	CACCTGC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PctI	GAATGC	2 cut(s)	299, 308
PfeI	GAWTC	3 cut(s)	121, 331, 733
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	430
PfoI	TCCNGGA	1 cut(s)	320
PkrI	GCNGC	9 cut(s)	37, 96, 167, 214, 355, 841, 854, 895, 983
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Ppu21I	YACGTR	1 cut(s)	350
PpuMI	RGGWCCY	2 cut(s)	172, 766
Psp5II	RGGWCCY	2 cut(s)	172, 766
Psp6I	CCWGG	4 cut(s)	44, 81, 158, 285
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	4 cut(s)	44, 81, 158, 285
PspN4I	GGNNCC	7 cut(s)	51, 90, 174, 436, 553, 640, 993
PspPI	GGNCC	5 cut(s)	109, 172, 552, 742, 766
PspPPI	RGGWCCY	2 cut(s)	172, 766
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	490
PsyI	GACNNNGTC	1 cut(s)	269
PvuII	CAGCTG	2 cut(s)	650, 931
RsaI	GTAC	3 cut(s)	348, 455, 1013
RsaNI	GTAC	3 cut(s)	347, 454, 1012
SaqAI	TTAA	1 cut(s)	1074
SatI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 840, 853, 894, 982
Sau3AI	GATC	3 cut(s)	382, 490, 775
Sau96I	GGNCC	5 cut(s)	109, 172, 552, 742, 766
ScaI	AGTACT	1 cut(s)	1013
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	5 cut(s)	46, 83, 160, 287, 322
SfaNI	GCATC	4 cut(s)	665, 905, 1083, 1097
SfcI	CTRYAG	3 cut(s)	213, 799, 1128
SinI	GGWCC	4 cut(s)	109, 172, 742, 766
Sse9I	AATT	4 cut(s)	588, 666, 725, 1071
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	5 cut(s)	44, 81, 158, 285, 320
StyI	CCWWGG	5 cut(s)	10, 607, 843, 995, 1063
TaaI	ACNGT	2 cut(s)	460, 616
TaiI	ACGT	3 cut(s)	81, 255, 352
TaqI	TCGA	3 cut(s)	72, 440, 681
TasI	AATT	4 cut(s)	588, 666, 725, 1071
TatI	WGTACW	2 cut(s)	453, 1011
TauI	GCSGC	5 cut(s)	38, 97, 168, 896, 984
TfiI	GAWTC	3 cut(s)	121, 331, 733
Tru1I	TTAA	1 cut(s)	1074
Tru9I	TTAA	1 cut(s)	1074
TscAI	CASTG	4 cut(s)	364, 463, 787, 834
TseFI	GTSAC	1 cut(s)	934
TseI	GCWGC	4 cut(s)	212, 353, 839, 852
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	3 cut(s)	455, 1053, 1113
TspRI	CASTG	4 cut(s)	364, 463, 787, 834
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	430
VpaK11BI	GGWCC	4 cut(s)	109, 172, 742, 766
XapI	RAATTY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	770
ZraI	GACGTC	1 cut(s)	79
ZrmI	AGTACT	1 cut(s)	1013
Zsp2I	ATGCAT	1 cut(s)	1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.