Rorug06G0178200

Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013367
Physical Location & Seq
Forward (+)
28136419 .. 28137236
818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0178200.1

Sequence Viewer

Length: 210 bp
ATGTCCTCCAAAACCTACGCCTCGATCCCGTCCTCCAAGTCTCCCTCCAAATCGAACAGTTGCCGATCACTGCCGCGCTCTCCAAGTTCTTCTCCGATGTTCTCCCTTAGAACCTCGCCGTCGACCTCGCGGACTTCGAGGCCCCGAAAAGGTGCAGTTTCGGTTCCGGAAGCAGTGCGGTTCGGGTTTCGGAGGAATTCTTGTACGTAA

Protein Analysis

69

Amino Acids

7.44

Weight (kDa)

11.92

Isoelectric Point (pI)

117.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43940 AT5G43940
fragaria_vesca FvH4_2g20240
malus_domestica MD05G1186000.v1.1 MD10G1174100.v1.1
prunus_persica Prupe.8G212700_v2.0.a1
pyrus_communis pycom05g17060 pycom10g15010
rosa_chinensis RchiOBHm_Chr6g0286011
rosa_laevigata RLG00000012590
rosa_multiflora Rmu_sc0019472.1_g000001
rosa_roxburghii Rroxscaffold_7G00182530
rosa_rugosa Rorug06G0178200
rosa_samantha Rh6AG290200 Rh6BG292200 Rh6CG293200 Rh6DG285300
rosa_wichuraiana Rw6G025010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 122
AccII CGCG 2 cut(s) 76, 130
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 3 cut(s) 74, 130, 178
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 19
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 196
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 45
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 143, 165
BsaAI YACGTR 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 76, 130
BshFI GGCC 1 cut(s) 142
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 142
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 2 cut(s) 24, 65
BspACI CCGC 3 cut(s) 74, 130, 178
BspANI GGCC 1 cut(s) 142
BspEI TCCGGA 1 cut(s) 166
BspFNI CGCG 2 cut(s) 76, 130
BspLI GGNNCC 2 cut(s) 143, 165
BspPI GGATC 1 cut(s) 19
BssMI GATC 2 cut(s) 24, 65
Bst4CI ACNGT 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 107
BstFNI CGCG 2 cut(s) 76, 130
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 2 cut(s) 27, 68
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 24, 65
BstSNI TACGTA 1 cut(s) 207
BstUI CGCG 2 cut(s) 76, 130
BsuRI GGCC 1 cut(s) 142
BtsI GCAGTG 2 cut(s) 68, 180
BtsIMutI CAGTG 2 cut(s) 68, 180
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 204
CviJI RGCY 1 cut(s) 142
CviKI_1 RGCY 1 cut(s) 142
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 26, 67
DpnII GATC 2 cut(s) 24, 65
Eco105I TACGTA 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 196
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 142
HapII CCGG 1 cut(s) 167
HhaI GCGC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HpaII CCGG 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 96, 192
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 206
HspAI GCGC 1 cut(s) 76
Kpn2I TCCGGA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 24, 65
LpnPI CCDG 1 cut(s) 180
MaeII ACGT 1 cut(s) 206
MalI GATC 2 cut(s) 26, 67
MboI GATC 2 cut(s) 24, 65
MboII GAAGA 1 cut(s) 81
MluCI AATT 1 cut(s) 196
MnlI CCTC 8 cut(s) 16, 31, 43, 55, 124, 132, 136, 186
MroI TCCGGA 1 cut(s) 166
MspI CCGG 1 cut(s) 167
MvnI CGCG 2 cut(s) 76, 130
NdeII GATC 2 cut(s) 24, 65
NlaIV GGNNCC 2 cut(s) 143, 165
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PkrI GCNGC 1 cut(s) 75
Ppu21I YACGTR 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 143, 165
PspPI GGNCC 1 cut(s) 141
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SalI GTCGAC 1 cut(s) 121
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 2 cut(s) 24, 65
Sau96I GGNCC 1 cut(s) 141
SetI ASST 5 cut(s) 17, 116, 128, 154, 209
SnaBI TACGTA 1 cut(s) 207
Sse9I AATT 1 cut(s) 196
SsiI CCGC 3 cut(s) 74, 130, 178
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 209
TaqI TCGA 4 cut(s) 23, 53, 122, 137
TasI AATT 1 cut(s) 196
TauI GCSGC 1 cut(s) 76
TscAI CASTG 2 cut(s) 75, 180
TspRI CASTG 2 cut(s) 75, 180
XapI RAATTY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.