Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0013367

Physical Location & Seq

Genomic Coordinates Forward (+)

48239073 .. 48243245

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCGACCCAAGGTCAAGTCATCACCTGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGCCTTTGGTTATCGAAGACGTCCAGGTGGCTCCGCCGCAGGCCGGAGAGGTCCGCGTCAAGATTCTCTACACCGCTCTCTGCCACACCGACGCTTACACCTGGGGCGGCAAGGACCCTGAAGGTCTCTTCCCTTGTATTCTTGGTCATGAGGCTGCAGGGATTGTTGAGAGTGTTGGTGAAGGTGTTACTGATGTTCAGGCGGGAGACCATGTCATCCCTTGTTACCAGGCTGAATGCGGAGAGTGCAAGTTTTGCAAATCCGGGAAGACAAATCTCTGTGGAAAAGTACGTGCTGCCACTGGAGTTGGAGTCATGATGAGTGATCGTCAGAGCCGTTTCTCTATAAACGGAAAGCCTATTTACCATTTTATGGGAACCTCGACATTTAGCCAGTACACTGTTGTTCATGATGTTAGTGTTGCCAAGATAGATCCAAAAGCTCCTTTGGAGAAAGTATGCCTTCTCGGATGTGGTGTTCCTACTGGTCTTGGGGCCGTTTGGAACACAGCAAAAGTAGAAGCAGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGTCTTGCAGTTGCCGAGGGTGCCAAAACAGCTGGTGCATCACGAATAATTGGCATTGACATCGATAGCAAGAAGTTTGATACAGCAAAGAACTTTGGAGTTACTGAATTTGTGAATCCAAAGGACCATGAGAAGCCAATCCAACAGGTCATAGTTGATCTCACTGATGGTGGTGTTGACTATAGCTTTGAGTGCATTGGGAAATGTCTCAGTGATGAGGGCTGCCTTGGAGTGCTGCCACAAGGGCTGGGGAACATCAGTTATTGTAGGTGTTGCGGCATCAGGGCAGGAGATATCAACTCGTCCTTTTCAGCTGGTGACTGGTCGTGTGTGGAAGGGAACAGCCTTTGGTGGTTTCAAGAGCCGCTCACAGGTGCCTTGGCTTGTAGAGAAGTACTTGAAGAAGGAAATCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

345

Amino Acids

36.42

Weight (kDa)

5.07

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	34 - 163	4.4e-22	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	206 - 274	1.4e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43940 AT5G43940
fragaria_vesca	FvH4_2g20240
malus_domestica	MD05G1186000.v1.1 MD10G1174100.v1.1
prunus_persica	Prupe.8G212700_v2.0.a1
pyrus_communis	pycom05g17060 pycom10g15010
rosa_chinensis	RchiOBHm_Chr6g0286011
rosa_laevigata	RLG00000012590
rosa_multiflora	Rmu_sc0019472.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182530
rosa_rugosa	Rorug06G0178200
rosa_samantha	Rh6AG290200 Rh6BG292200 Rh6CG293200 Rh6DG285300
rosa_wichuraiana	Rw6G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	2 cut(s)	638, 992
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccBSI	CCGCTC	2 cut(s)	134, 985
AccII	CGCG	1 cut(s)	114
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	348, 455, 1014
AfiI	CCNNNNNNNGG	3 cut(s)	101, 430, 989
AgsI	TTSAA	2 cut(s)	977, 1019
AhdI	GACNNNNNGTC	1 cut(s)	12
AjnI	CCWGG	4 cut(s)	44, 81, 158, 285
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	500, 650, 804, 932
AluI	AGCT	4 cut(s)	500, 650, 804, 932
Alw26I	GTCTC	3 cut(s)	188, 258, 830
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	4 cut(s)	42, 99, 552, 604
ApeKI	GCWGC	4 cut(s)	212, 353, 840, 853
ApoI	RAATTY	1 cut(s)	725
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
AspS9I	GGNCC	4 cut(s)	109, 172, 552, 742
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	16, 248, 947
AvaII	GGWCC	3 cut(s)	109, 172, 742
BanI	GGYRCC	2 cut(s)	638, 992
BbsI	GAAGAC	2 cut(s)	81, 332
BbvI	GCAGC	4 cut(s)	199, 340, 827, 840
BccI	CCATC	1 cut(s)	779
BceAI	ACGGC	2 cut(s)	378, 539
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BciT130I	CCWGG	4 cut(s)	46, 83, 160, 287
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	188, 258, 830
BfmI	CTRYAG	2 cut(s)	213, 799
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	862
BisI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 841, 854, 895, 983
BlsI	GCNGC	9 cut(s)	37, 96, 167, 214, 355, 842, 855, 896, 984
BmcAI	AGTACT	1 cut(s)	1014
Bme1390I	CCNGG	5 cut(s)	46, 83, 160, 287, 322
Bme18I	GGWCC	3 cut(s)	109, 172, 742
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmgT120I	GGNCC	4 cut(s)	109, 172, 552, 742
BmiI	GGNNCC	7 cut(s)	51, 90, 174, 436, 553, 640, 994
BmrFI	CCNGG	5 cut(s)	46, 83, 160, 287, 322
BmsI	GCATC	2 cut(s)	665, 906
BpiI	GAAGAC	2 cut(s)	81, 332
BpmI	CTGGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	2 cut(s)	188, 258
BsaJI	CCNNGG	7 cut(s)	10, 45, 159, 607, 633, 844, 996
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 430, 989
Bse1I	ACTGG	4 cut(s)	364, 451, 547, 944
BseBI	CCWGG	4 cut(s)	46, 83, 160, 287
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	7 cut(s)	10, 45, 159, 607, 633, 844, 996
BseGI	GGATG	2 cut(s)	273, 533
BseLI	CCNNNNNNNGG	3 cut(s)	101, 430, 989
BseMII	CTCAG	1 cut(s)	841
BseNI	ACTGG	4 cut(s)	364, 451, 547, 944
BseXI	GCAGC	4 cut(s)	199, 340, 827, 840
BseYI	CCCAGC	1 cut(s)	865
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	44, 101, 554, 606
BshNI	GGYRCC	2 cut(s)	638, 992
BshVI	ATCGAT	1 cut(s)	681
BsiSI	CCGG	2 cut(s)	102, 321
BslI	CCNNNNNNNGG	3 cut(s)	101, 430, 989
BsmAI	GTCTC	3 cut(s)	188, 258, 830
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	4 cut(s)	44, 101, 554, 606
Bso31I	GGTCTC	2 cut(s)	188, 258
Bsp143I	GATC	3 cut(s)	382, 490, 775
BspANI	GGCC	4 cut(s)	44, 101, 554, 606
BspCNI	CTCAG	1 cut(s)	840
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	3 cut(s)	205, 372, 466
BspLI	GGNNCC	7 cut(s)	51, 90, 174, 436, 553, 640, 994
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	485
BspT107I	GGYRCC	2 cut(s)	638, 992
BspTNI	GGTCTC	2 cut(s)	188, 258
BsrBI	CCGCTC	2 cut(s)	134, 985
BsrI	ACTGG	4 cut(s)	364, 451, 547, 944
BssECI	CCNNGG	7 cut(s)	10, 45, 159, 607, 633, 844, 996
BssMI	GATC	3 cut(s)	382, 490, 775
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	4 cut(s)	10, 607, 844, 996
Bst2UI	CCWGG	4 cut(s)	46, 83, 160, 287
Bst4CI	ACNGT	2 cut(s)	460, 616
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	827
BstF5I	GGATG	2 cut(s)	273, 533
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	385, 493, 778
BstMAI	GTCTC	3 cut(s)	188, 258, 830
BstMBI	GATC	3 cut(s)	382, 490, 775
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 303, 312, 638, 647, 810, 862
BstNI	CCWGG	4 cut(s)	46, 83, 160, 287
BstSCI	CCNGG	5 cut(s)	44, 81, 158, 285, 320
BstSFI	CTRYAG	2 cut(s)	213, 799
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	4 cut(s)	199, 340, 827, 840
BstV2I	GAAGAC	2 cut(s)	81, 332
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	4 cut(s)	44, 101, 554, 606
BsuTUI	ATCGAT	1 cut(s)	681
BtsCI	GGATG	2 cut(s)	273, 533
BtsIMutI	CAGTG	4 cut(s)	357, 456, 780, 835
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	3 cut(s)	205, 372, 466
Cfr13I	GGNCC	4 cut(s)	109, 172, 552, 742
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	2 cut(s)	103, 158
Csp6I	GTAC	3 cut(s)	347, 454, 1013
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	5 cut(s)	206, 269, 373, 467, 746
CviQI	GTAC	3 cut(s)	347, 454, 1013
DdeI	CTNAG	1 cut(s)	827
DpnI	GATC	3 cut(s)	384, 492, 777
DpnII	GATC	3 cut(s)	382, 490, 775
DriI	GACNNNNNGTC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	191
Eam1105I	GACNNNNNGTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	4 cut(s)	10, 607, 844, 996
Eco31I	GGTCTC	2 cut(s)	188, 258
Eco32I	GATATC	1 cut(s)	913
Eco47I	GGWCC	3 cut(s)	109, 172, 742
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	4 cut(s)	44, 81, 158, 285
EcoRV	GATATC	1 cut(s)	913
EcoT14I	CCWWGG	4 cut(s)	10, 607, 844, 996
ErhI	CCWWGG	4 cut(s)	10, 607, 844, 996
FaeI	CATG	5 cut(s)	209, 272, 376, 470, 749
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	5 cut(s)	205, 268, 372, 466, 745
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 841, 854, 895, 983
FokI	GGATG	2 cut(s)	260, 540
Fsp4HI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 841, 854, 895, 983
GluI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 841, 854, 895, 983
GsaI	CCCAGC	1 cut(s)	869
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	44, 101, 554, 606
HapII	CCGG	2 cut(s)	102, 321
HgaI	GACGC	2 cut(s)	103, 158
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	209, 272, 376, 470, 749
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	3 cut(s)	121, 369, 733
HpaII	CCGG	2 cut(s)	102, 321
HphI	GGTGA	3 cut(s)	16, 248, 947
Hpy166II	GTNNAC	2 cut(s)	456, 796
Hpy188I	TCNGA	2 cut(s)	390, 527
Hpy188III	TCNNGA	6 cut(s)	118, 206, 373, 467, 660, 977
Hpy8I	GTNNAC	2 cut(s)	456, 796
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	5 cut(s)	173, 233, 530, 947, 1016
HpyCH4III	ACNGT	2 cut(s)	460, 616
HpyCH4IV	ACGT	2 cut(s)	78, 349
HpyCH4V	TGCA	7 cut(s)	30, 215, 306, 315, 626, 656, 813
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 303, 312, 638, 647, 810, 862
HpyF3I	CTNAG	1 cut(s)	827
HpySE526I	ACGT	2 cut(s)	78, 349
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	209, 272, 376, 470, 749
Kzo9I	GATC	3 cut(s)	382, 490, 775
LmnI	GCTCC	2 cut(s)	94, 505
Lsp1109I	GCAGC	4 cut(s)	199, 340, 827, 840
LweI	GCATC	2 cut(s)	665, 906
MaeII	ACGT	2 cut(s)	78, 349
MaeIII	GTNAC	4 cut(s)	244, 281, 718, 935
MalI	GATC	3 cut(s)	384, 492, 777
MbiI	CCGCTC	2 cut(s)	134, 985
MboI	GATC	3 cut(s)	382, 490, 775
MboII	GAAGA	4 cut(s)	86, 178, 337, 1031
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	3 cut(s)	588, 666, 725
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	2 cut(s)	346, 784
MnlI	CCTC	5 cut(s)	100, 202, 448, 628, 829
MspA1I	CMGCKG	2 cut(s)	650, 932
MspI	CCGG	2 cut(s)	102, 321
MspR9I	CCNGG	5 cut(s)	46, 83, 160, 287, 322
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	4 cut(s)	46, 83, 160, 287
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	7 cut(s)	41, 303, 312, 638, 647, 810, 862
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	382, 490, 775
NlaIII	CATG	5 cut(s)	209, 272, 376, 470, 749
NlaIV	GGNNCC	7 cut(s)	51, 90, 174, 436, 553, 640, 994
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	935
PagI	TCATGA	3 cut(s)	205, 372, 466
PaqCI	CACCTGC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	121, 733
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	430
PfoI	TCCNGGA	1 cut(s)	320
PkrI	GCNGC	9 cut(s)	37, 96, 167, 214, 355, 842, 855, 896, 984
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Ppu21I	YACGTR	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	4 cut(s)	44, 81, 158, 285
PspFI	CCCAGC	1 cut(s)	865
PspGI	CCWGG	4 cut(s)	44, 81, 158, 285
PspN4I	GGNNCC	7 cut(s)	51, 90, 174, 436, 553, 640, 994
PspPI	GGNCC	4 cut(s)	109, 172, 552, 742
PspPPI	RGGWCCY	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	490
PsyI	GACNNNGTC	1 cut(s)	269
PvuII	CAGCTG	2 cut(s)	650, 932
RsaI	GTAC	3 cut(s)	348, 455, 1014
RsaNI	GTAC	3 cut(s)	347, 454, 1013
SatI	GCNGC	9 cut(s)	36, 95, 166, 213, 354, 841, 854, 895, 983
Sau3AI	GATC	3 cut(s)	382, 490, 775
Sau96I	GGNCC	4 cut(s)	109, 172, 552, 742
ScaI	AGTACT	1 cut(s)	1014
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	5 cut(s)	46, 83, 160, 287, 322
SfaNI	GCATC	2 cut(s)	665, 906
SfcI	CTRYAG	2 cut(s)	213, 799
SinI	GGWCC	3 cut(s)	109, 172, 742
Sse9I	AATT	3 cut(s)	588, 666, 725
StyD4I	CCNGG	5 cut(s)	44, 81, 158, 285, 320
StyI	CCWWGG	4 cut(s)	10, 607, 844, 996
TaaI	ACNGT	2 cut(s)	460, 616
TaiI	ACGT	2 cut(s)	81, 352
TaqI	TCGA	3 cut(s)	72, 440, 681
TasI	AATT	3 cut(s)	588, 666, 725
TatI	WGTACW	2 cut(s)	453, 1012
TauI	GCSGC	5 cut(s)	38, 97, 168, 897, 985
TfiI	GAWTC	2 cut(s)	121, 733
TscAI	CASTG	4 cut(s)	364, 463, 787, 835
TseFI	GTSAC	1 cut(s)	935
TseI	GCWGC	4 cut(s)	212, 353, 840, 853
Tsp45I	GTSAC	1 cut(s)	935
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	4 cut(s)	364, 463, 787, 835
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	430
VpaK11BI	GGWCC	3 cut(s)	109, 172, 742
XapI	RAATTY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
ZraI	GACGTC	1 cut(s)	79
ZrmI	AGTACT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.