Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019472.1

Orthogroup ID

OG0013367

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2040

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019472.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 869 bp

gaccctgaaggtctcttcccttgtattcttggtcatgaggctgcagggattgttgagagtgttggtgaaggtgttactgatgttcaggcgggagaccatgtcatcccttgttaccaggctgaatgcggagaatgcaagttttgcaaatccgggaagacaaatctctgtggaaaagtacgtgctgccactggagttggagtcatgatgagtgatcgtcagagccgtttctctataaacggaaagcctatttaccattttatgggaacctcgacatttagccagtacactgttgttcatgatgttagtgttgccaagatagatccaaaagctcctttggagaaagtatgccttctcggatgtggtgttcctactggtcttggggccgtttggaacacagcaaaagtagaagcagggtcaattgttgctatttttggccttggaactgttggtcttgcagttgccgagggtgccaaaacagctggtgcatcacgaataattggcattgacatcgatagcaagaagtttgatacagcaaagaactttggagttactgaatttgtgaatccaaaggaccatgagaagccaatccaacaggtcatagttgatctcactgatggtggtgttgactatagctttgagtgcattgggaatgtctcagtgatgagggctgccttggagtgctgccacaagggctggggaacatcagttattgtaggtgttgcggcatcagggcaggagatatcaactcgtccttttcagctggtgactggtcgtgtgtggaagggaacagcctttggtggtttcaagagccgctcacaggtgccttggcttgtagagaagtacttgaagaaggtgacaaatggtttgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

290

Amino Acids

30.59

Weight (kDa)

7.63

Isoelectric Point (pI)

20.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43940 AT5G43940
fragaria_vesca	FvH4_2g20240
malus_domestica	MD05G1186000.v1.1 MD10G1174100.v1.1
prunus_persica	Prupe.8G212700_v2.0.a1
pyrus_communis	pycom05g17060 pycom10g15010
rosa_chinensis	RchiOBHm_Chr6g0286011
rosa_laevigata	RLG00000012590
rosa_multiflora	Rmu_sc0019472.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182530
rosa_rugosa	Rorug06G0178200
rosa_samantha	Rh6AG290200 Rh6BG292200 Rh6CG293200 Rh6DG285300
rosa_wichuraiana	Rw6G025010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	467, 820
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccBSI	CCGCTC	1 cut(s)	813
AciI	CCGC	4 cut(s)	89, 126, 722, 811
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	177, 284, 842
AfiI	CCNNNNNNNGG	2 cut(s)	259, 817
AgsI	TTSAA	2 cut(s)	805, 847
AjnI	CCWGG	1 cut(s)	114
AloI	GAACNNNNNNTCC	2 cut(s)	348, 380
AluBI	AGCT	4 cut(s)	329, 479, 633, 760
AluI	AGCT	4 cut(s)	329, 479, 633, 760
Alw26I	GTCTC	3 cut(s)	17, 87, 658
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	2 cut(s)	381, 433
ApeKI	GCWGC	4 cut(s)	41, 182, 668, 681
ApoI	RAATTY	1 cut(s)	554
ArsI	GACNNNNNNTTYG	3 cut(s)	617, 649, 847
AspS9I	GGNCC	2 cut(s)	381, 571
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	77, 775, 865
AvaII	GGWCC	1 cut(s)	571
BanI	GGYRCC	2 cut(s)	467, 820
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	4 cut(s)	28, 169, 655, 668
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	2 cut(s)	207, 368
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	17, 87, 658
BfmI	CTRYAG	2 cut(s)	42, 628
BglI	GCCNNNNNGGC	1 cut(s)	690
BisI	GCNGC	6 cut(s)	42, 183, 669, 682, 723, 811
BlsI	GCNGC	6 cut(s)	43, 184, 670, 683, 724, 812
BmcAI	AGTACT	1 cut(s)	842
Bme1390I	CCNGG	2 cut(s)	116, 151
Bme18I	GGWCC	1 cut(s)	571
BmgT120I	GGNCC	2 cut(s)	381, 571
BmiI	GGNNCC	4 cut(s)	265, 382, 469, 822
BmrFI	CCNGG	2 cut(s)	116, 151
BmsI	GCATC	2 cut(s)	494, 734
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	179
BsaI	GGTCTC	2 cut(s)	17, 87
BsaJI	CCNNGG	4 cut(s)	436, 462, 672, 824
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 183, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 817
Bse1I	ACTGG	4 cut(s)	193, 280, 376, 772
BseBI	CCWGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	4 cut(s)	436, 462, 672, 824
BseGI	GGATG	2 cut(s)	102, 362
BseLI	CCNNNNNNNGG	2 cut(s)	259, 817
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	4 cut(s)	193, 280, 376, 772
BseXI	GCAGC	4 cut(s)	28, 169, 655, 668
BseYI	CCCAGC	1 cut(s)	693
BshFI	GGCC	2 cut(s)	383, 435
BshNI	GGYRCC	2 cut(s)	467, 820
BshVI	ATCGAT	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	259, 817
BsmAI	GTCTC	3 cut(s)	17, 87, 658
BsmI	GAATGC	2 cut(s)	128, 137
BsnI	GGCC	2 cut(s)	383, 435
Bso31I	GGTCTC	2 cut(s)	17, 87
Bsp143I	GATC	3 cut(s)	211, 319, 604
BspACI	CCGC	4 cut(s)	89, 126, 722, 811
BspANI	GGCC	2 cut(s)	383, 435
BspCNI	CTCAG	1 cut(s)	668
BspDI	ATCGAT	1 cut(s)	510
BspHI	TCATGA	3 cut(s)	34, 201, 295
BspLI	GGNNCC	4 cut(s)	265, 382, 469, 822
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	1 cut(s)	314
BspT107I	GGYRCC	2 cut(s)	467, 820
BspTNI	GGTCTC	2 cut(s)	17, 87
BsrBI	CCGCTC	1 cut(s)	813
BsrI	ACTGG	4 cut(s)	193, 280, 376, 772
BssECI	CCNNGG	4 cut(s)	436, 462, 672, 824
BssMI	GATC	3 cut(s)	211, 319, 604
BssT1I	CCWWGG	3 cut(s)	436, 672, 824
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	289, 445
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	655
BstF5I	GGATG	2 cut(s)	102, 362
BstKTI	GATC	3 cut(s)	214, 322, 607
BstMAI	GTCTC	3 cut(s)	17, 87, 658
BstMBI	GATC	3 cut(s)	211, 319, 604
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 141, 467, 476, 639, 690
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 149
BstSFI	CTRYAG	2 cut(s)	42, 628
BstV1I	GCAGC	4 cut(s)	28, 169, 655, 668
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	383, 435
BsuTUI	ATCGAT	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	102, 362
BtsIMutI	CAGTG	4 cut(s)	186, 285, 609, 663
CciI	TCATGA	3 cut(s)	34, 201, 295
Cfr13I	GGNCC	2 cut(s)	381, 571
ClaI	ATCGAT	1 cut(s)	510
Csp6I	GTAC	3 cut(s)	176, 283, 841
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	5 cut(s)	35, 98, 202, 296, 575
CviQI	GTAC	3 cut(s)	176, 283, 841
DdeI	CTNAG	1 cut(s)	655
DpnI	GATC	3 cut(s)	213, 321, 606
DpnII	GATC	3 cut(s)	211, 319, 604
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	436, 672, 824
Eco31I	GGTCTC	2 cut(s)	17, 87
Eco32I	GATATC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	741
EcoT14I	CCWWGG	3 cut(s)	436, 672, 824
ErhI	CCWWGG	3 cut(s)	436, 672, 824
FaeI	CATG	5 cut(s)	38, 101, 205, 299, 578
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	5 cut(s)	34, 97, 201, 295, 574
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	6 cut(s)	42, 183, 669, 682, 723, 811
FokI	GGATG	2 cut(s)	89, 369
Fsp4HI	GCNGC	6 cut(s)	42, 183, 669, 682, 723, 811
GluI	GCNGC	6 cut(s)	42, 183, 669, 682, 723, 811
GsaI	CCCAGC	1 cut(s)	697
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	383, 435
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	5 cut(s)	38, 101, 205, 299, 578
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	2 cut(s)	198, 562
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	3 cut(s)	77, 775, 865
Hpy166II	GTNNAC	2 cut(s)	285, 625
Hpy188I	TCNGA	2 cut(s)	219, 356
Hpy188III	TCNNGA	5 cut(s)	35, 202, 296, 489, 805
Hpy8I	GTNNAC	2 cut(s)	285, 625
HpyAV	CCTTC	4 cut(s)	62, 359, 775, 844
HpyCH4III	ACNGT	2 cut(s)	289, 445
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	6 cut(s)	44, 135, 144, 455, 485, 642
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 141, 467, 476, 639, 690
HpyF3I	CTNAG	1 cut(s)	655
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	5 cut(s)	38, 101, 205, 299, 578
Kzo9I	GATC	3 cut(s)	211, 319, 604
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	4 cut(s)	28, 169, 655, 668
LweI	GCATC	2 cut(s)	494, 734
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	5 cut(s)	73, 110, 547, 763, 853
MalI	GATC	3 cut(s)	213, 321, 606
MbiI	CCGCTC	1 cut(s)	813
MboI	GATC	3 cut(s)	211, 319, 604
MboII	GAAGA	3 cut(s)	7, 166, 859
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	3 cut(s)	417, 495, 554
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	175, 613
MnlI	CCTC	4 cut(s)	31, 277, 457, 657
MspA1I	CMGCKG	2 cut(s)	479, 760
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	116, 151
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	2 cut(s)	128, 137
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	6 cut(s)	132, 141, 467, 476, 639, 690
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	3 cut(s)	211, 319, 604
NlaIII	CATG	5 cut(s)	38, 101, 205, 299, 578
NlaIV	GGNNCC	4 cut(s)	265, 382, 469, 822
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	2 cut(s)	763, 853
PagI	TCATGA	3 cut(s)	34, 201, 295
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	2 cut(s)	128, 137
PfeI	GAWTC	1 cut(s)	562
PflFI	GACNNNGTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	6 cut(s)	43, 184, 670, 683, 724, 812
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	4 cut(s)	265, 382, 469, 822
PspPI	GGNCC	2 cut(s)	381, 571
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	98
PvuII	CAGCTG	2 cut(s)	479, 760
RsaI	GTAC	3 cut(s)	177, 284, 842
RsaNI	GTAC	3 cut(s)	176, 283, 841
SatI	GCNGC	6 cut(s)	42, 183, 669, 682, 723, 811
Sau3AI	GATC	3 cut(s)	211, 319, 604
Sau96I	GGNCC	2 cut(s)	381, 571
ScaI	AGTACT	1 cut(s)	842
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	116, 151
SfaNI	GCATC	2 cut(s)	494, 734
SfcI	CTRYAG	2 cut(s)	42, 628
SinI	GGWCC	1 cut(s)	571
Sse9I	AATT	3 cut(s)	417, 495, 554
SsiI	CCGC	4 cut(s)	89, 126, 722, 811
StyD4I	CCNGG	2 cut(s)	114, 149
StyI	CCWWGG	3 cut(s)	436, 672, 824
TaaI	ACNGT	2 cut(s)	289, 445
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	269, 510
TasI	AATT	3 cut(s)	417, 495, 554
TatI	WGTACW	2 cut(s)	282, 840
TauI	GCSGC	2 cut(s)	725, 813
TfiI	GAWTC	1 cut(s)	562
TscAI	CASTG	4 cut(s)	193, 292, 616, 663
TseFI	GTSAC	2 cut(s)	763, 853
TseI	GCWGC	4 cut(s)	41, 182, 668, 681
Tsp45I	GTSAC	2 cut(s)	763, 853
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	4 cut(s)	193, 292, 616, 663
Tth111I	GACNNNGTC	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	571
XapI	RAATTY	1 cut(s)	554
ZrmI	AGTACT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.