Rh6CG293200

Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013367
Physical Location & Seq
Forward (+)
47114684 .. 47118780
4097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG293200.1

Sequence Viewer

Length: 768 bp
ATGATGAGTGATCGTCAGAGCCGTTTCTCTATAAACGGAAAGCCTATTTACCATTTTATGGGAACCTCGACATTTAGCCAGTACACTGTTGTTCATGATGTTAGCGTTGCCAAGATAGATCCAAAAGCTCCTTTGGAGAAAGTATGCCTTCTCGGATGTGGTGTTCCTACTGGTCTTGGAGCCGTTTGGAACACAGCAAAAGTAGAAGCAGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGTCTTGCAGTTGCCGAGGGTGCCAAAACAGCTGGTGCATCACGAATAATTGGCATCGACATCGATAGCAAGAAGTTTGATACCGCAAAGAACTTTGGAGTTACTGAATTTGTGAATCCAAAGGACCATGAGAAGCCAATCCAACAGGTCATAGTTGATCTCACTGATGGTGGTGTTGACTATAGCTTTGAGTGCATTGGGAATGTTTCAGTGATGAGGGCTGCCTTGGAGTGCTGCCACAAGGGCTGGGGAACATCAGTTATTGTAGGTGTTGCGGCATCAGGGCAGGAGATATCAACTCGTCCTTTTCAGCTGGTGACTGGTCGTGTGTGGAAGGGAACAGCCTTTGGTGGTTTCAAGAGCCGCTCACAGGTGCCTTGGCTTGTAGAGAAGTACTTGAAGAAGGAAATCAAAGTTGATGAATACATCACCCACACTTTGACCCTTGGGGAAATAAACAAGGCATTTGATTTGATGCATGAAGGGGGATGCCTCCGGTGTGTGCTTTCTACAGAAGCATAA

Protein Analysis

255

Amino Acids

27.44

Weight (kDa)

7.59

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 82 - 210 3e-26 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43940 AT5G43940
fragaria_vesca FvH4_2g20240
malus_domestica MD05G1186000.v1.1 MD10G1174100.v1.1
prunus_persica Prupe.8G212700_v2.0.a1
pyrus_communis pycom05g17060 pycom10g15010
rosa_chinensis RchiOBHm_Chr6g0286011
rosa_laevigata RLG00000012590
rosa_multiflora Rmu_sc0019472.1_g000001
rosa_roxburghii Rroxscaffold_7G00182530
rosa_rugosa Rorug06G0178200
rosa_samantha Rh6AG290200 Rh6BG292200 Rh6CG293200 Rh6DG285300
rosa_wichuraiana Rw6G025010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 266, 619
AccB7I CCANNNNNTGG 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 612
AciI CCGC 3 cut(s) 330, 521, 610
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 353
AfaI GTAC 2 cut(s) 83, 641
AfiI CCNNNNNNNGG 2 cut(s) 58, 616
AgsI TTSAA 2 cut(s) 604, 646
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 128, 278, 432, 559
AluI AGCT 4 cut(s) 128, 278, 432, 559
AlwI GGATC 1 cut(s) 113
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 467, 480
ApoI RAATTY 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 2 cut(s) 574, 667
AvaII GGWCC 1 cut(s) 370
BanI GGYRCC 2 cut(s) 266, 619
BbvI GCAGC 2 cut(s) 454, 467
BccI CCATC 1 cut(s) 407
BceAI ACGGC 2 cut(s) 6, 167
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BfmI CTRYAG 2 cut(s) 427, 756
BglI GCCNNNNNGGC 1 cut(s) 489
BisI GCNGC 4 cut(s) 468, 481, 522, 610
BlsI GCNGC 4 cut(s) 469, 482, 523, 611
BmcAI AGTACT 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 4 cut(s) 64, 181, 268, 621
BmsI GCATC 5 cut(s) 293, 309, 533, 711, 725
Bsa29I ATCGAT 1 cut(s) 309
BsaJI CCNNGG 5 cut(s) 235, 261, 471, 623, 691
BsaWI WCCGGW 1 cut(s) 741
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 616
Bse1I ACTGG 3 cut(s) 79, 175, 571
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 5 cut(s) 235, 261, 471, 623, 691
BseGI GGATG 2 cut(s) 161, 740
BseLI CCNNNNNNNGG 2 cut(s) 58, 616
BseNI ACTGG 3 cut(s) 79, 175, 571
BseXI GCAGC 2 cut(s) 454, 467
BseYI CCCAGC 1 cut(s) 492
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 2 cut(s) 266, 619
BshVI ATCGAT 1 cut(s) 309
BsiSI CCGG 1 cut(s) 742
BslI CCNNNNNNNGG 2 cut(s) 58, 616
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 10, 118, 403
BspACI CCGC 3 cut(s) 330, 521, 610
BspANI GGCC 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 309
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 4 cut(s) 64, 181, 268, 621
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 2 cut(s) 266, 619
BsrBI CCGCTC 1 cut(s) 612
BsrI ACTGG 3 cut(s) 79, 175, 571
BssECI CCNNGG 5 cut(s) 235, 261, 471, 623, 691
BssMI GATC 3 cut(s) 10, 118, 403
BssT1I CCWWGG 4 cut(s) 235, 471, 623, 691
Bst4CI ACNGT 2 cut(s) 88, 244
BstF5I GGATG 2 cut(s) 161, 740
BstKTI GATC 3 cut(s) 13, 121, 406
BstMBI GATC 3 cut(s) 10, 118, 403
BstMWI GCNNNNNNNGC 4 cut(s) 266, 275, 438, 489
BstSFI CTRYAG 2 cut(s) 427, 756
BstV1I GCAGC 2 cut(s) 454, 467
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 2 cut(s) 161, 740
BtsIMutI CAGTG 3 cut(s) 84, 408, 462
CciI TCATGA 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 2 cut(s) 82, 640
CviAII CATG 3 cut(s) 95, 374, 725
CviQI GTAC 2 cut(s) 82, 640
DpnI GATC 3 cut(s) 12, 120, 405
DpnII GATC 3 cut(s) 10, 118, 403
Eco130I CCWWGG 4 cut(s) 235, 471, 623, 691
Eco32I GATATC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 370
EcoRV GATATC 1 cut(s) 540
EcoT14I CCWWGG 4 cut(s) 235, 471, 623, 691
EcoT22I ATGCAT 1 cut(s) 726
ErhI CCWWGG 4 cut(s) 235, 471, 623, 691
FaeI CATG 3 cut(s) 98, 377, 728
FaiI YATR 9 cut(s) 32, 59, 96, 145, 375, 398, 429, 726, 766
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 3 cut(s) 94, 373, 724
Fnu4HI GCNGC 4 cut(s) 468, 481, 522, 610
FokI GGATG 2 cut(s) 168, 747
Fsp4HI GCNGC 4 cut(s) 468, 481, 522, 610
GluI GCNGC 4 cut(s) 468, 481, 522, 610
GsaI CCCAGC 1 cut(s) 496
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 742
Hin1II CATG 3 cut(s) 98, 377, 728
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 1 cut(s) 361
HpaII CCGG 1 cut(s) 742
HphI GGTGA 2 cut(s) 574, 667
Hpy166II GTNNAC 2 cut(s) 84, 424
Hpy188I TCNGA 2 cut(s) 18, 155
Hpy188III TCNNGA 3 cut(s) 95, 288, 604
Hpy8I GTNNAC 2 cut(s) 84, 424
HpyAV CCTTC 4 cut(s) 158, 574, 643, 722
HpyCH4III ACNGT 2 cut(s) 88, 244
HpyCH4V TGCA 4 cut(s) 254, 284, 441, 724
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 275, 438, 489
Hsp92II CATG 3 cut(s) 98, 377, 728
Kzo9I GATC 3 cut(s) 10, 118, 403
LmnI GCTCC 2 cut(s) 133, 179
Lsp1109I GCAGC 2 cut(s) 454, 467
LweI GCATC 5 cut(s) 293, 309, 533, 711, 725
MaeIII GTNAC 2 cut(s) 346, 562
MalI GATC 3 cut(s) 12, 120, 405
MbiI CCGCTC 1 cut(s) 612
MboI GATC 3 cut(s) 10, 118, 403
MboII GAAGA 1 cut(s) 658
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 118
MluCI AATT 3 cut(s) 216, 294, 353
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 4 cut(s) 76, 256, 456, 749
Mph1103I ATGCAT 1 cut(s) 726
MspA1I CMGCKG 2 cut(s) 278, 559
MspI CCGG 1 cut(s) 742
MunI CAATTG 1 cut(s) 216
MwoI GCNNNNNNNGC 4 cut(s) 266, 275, 438, 489
NdeII GATC 3 cut(s) 10, 118, 403
NlaIII CATG 3 cut(s) 98, 377, 728
NlaIV GGNNCC 4 cut(s) 64, 181, 268, 621
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 562
NsiI ATGCAT 1 cut(s) 726
PagI TCATGA 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PfeI GAWTC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 4 cut(s) 469, 482, 523, 611
PspFI CCCAGC 1 cut(s) 492
PspN4I GGNNCC 4 cut(s) 64, 181, 268, 621
PspPI GGNCC 1 cut(s) 370
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 2 cut(s) 278, 559
RsaI GTAC 2 cut(s) 83, 641
RsaNI GTAC 2 cut(s) 82, 640
SatI GCNGC 4 cut(s) 468, 481, 522, 610
Sau3AI GATC 3 cut(s) 10, 118, 403
Sau96I GGNCC 1 cut(s) 370
ScaI AGTACT 1 cut(s) 641
SetI ASST 8 cut(s) 68, 130, 280, 396, 434, 517, 561, 621
SfaNI GCATC 5 cut(s) 293, 309, 533, 711, 725
SfcI CTRYAG 2 cut(s) 427, 756
SinI GGWCC 1 cut(s) 370
Sse9I AATT 3 cut(s) 216, 294, 353
SsiI CCGC 3 cut(s) 330, 521, 610
StyI CCWWGG 4 cut(s) 235, 471, 623, 691
TaaI ACNGT 2 cut(s) 88, 244
TaqI TCGA 3 cut(s) 68, 303, 309
TasI AATT 3 cut(s) 216, 294, 353
TatI WGTACW 2 cut(s) 81, 639
TauI GCSGC 2 cut(s) 524, 612
TfiI GAWTC 1 cut(s) 361
TscAI CASTG 3 cut(s) 91, 415, 462
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 2 cut(s) 467, 480
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 3 cut(s) 83, 681, 741
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 3 cut(s) 91, 415, 462
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 641
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.