pycom05g20110

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015978
Physical Location & Seq
Forward (+)
22994380 .. 22995713
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGAGGTGCTGGCTGGTGACTTCTTTTCTGATCATGACGTTTGTTATTATCCAAGAAAGAACAGACGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATCGATCTTCGATCCAAAACAATTAGGCTTTTAAGGATGAAGAAGATGAATTTTCTGCTACGGAAGTGCAAGAGCTTGTCAAGACAGCTAGGGCGATCTTCATCATGCGGTAGCCTAAGGTCGAAATCTGCGAGGGAGAATATATGTGTGCATGATAGTCATGAACTTCATCATCACCAAACTGTAATATTCGTGGGAAGCACGAGGAAGCGTTATGTGATTAGCTCGAAGTACCTCAACCATCCGTTGTTAGATGCCTTGATCGACAAGTCACCGAAGCAAAAACGAGGAGAGGAGGATGGCATCTTGGTAAACTGTGAGGTGGTTTTGTTTGATCACTTGTTGTGGATGCTGGAGAATAATGCAGAAGATCCCAGCTTTGGTAGCACTTCAGAGTCATTGGAGGAATTGGCTGCCCTCTATGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

181

Amino Acids

20.6

Weight (kDa)

9.04

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 72 - 155 1.7e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12955
fragaria_vesca FvH4_3g15820
malus_domestica MD05G1219800.v1.1 MD10G1202100.v1.1
prunus_persica Prupe.4G140200_v2.0.a1
pyrus_communis pycom05g20110 pycom10g17290
rosa_chinensis RchiOBHm_Chr5g0026611
rosa_multiflora Rmu_sc0018952.1_g000005
rosa_rugosa Rorug05G0094200
rosa_samantha Rh5AG187600 Rh5BG184100 Rh5CG204100 Rh5DG186400
rosa_wichuraiana Rw5G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 69
AciI CCGC 1 cut(s) 219
AclWI GGATC 2 cut(s) 117, 476
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 491
AluBI AGCT 4 cut(s) 186, 199, 336, 489
AluI AGCT 4 cut(s) 186, 199, 336, 489
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 117, 476
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 160
AsuHPI GGTGA 3 cut(s) 28, 278, 375
AxyI CCTNAGG 1 cut(s) 227
BauI CACGAG 1 cut(s) 313
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 360, 404
BclI TGATCA 2 cut(s) 30, 445
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
BmsI GCATC 3 cut(s) 355, 423, 450
BpmI CTGGAG 1 cut(s) 485
Bsa29I ATCGAT 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse21I CCTNAGG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 114
BseGI GGATG 4 cut(s) 153, 352, 415, 465
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 491
BseRI GAGGAG 2 cut(s) 414, 419
BseXI GCAGC 1 cut(s) 511
BseYI CCCAGC 1 cut(s) 485
BshVI ATCGAT 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
Bsp143I GATC 8 cut(s) 30, 111, 115, 122, 206, 372, 445, 481
BspACI CCGC 1 cut(s) 219
BspDI ATCGAT 1 cut(s) 114
BspHI TCATGA 2 cut(s) 33, 271
BspPI GGATC 2 cut(s) 117, 476
BssMI GATC 8 cut(s) 30, 111, 115, 122, 206, 372, 445, 481
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 313
Bst4CI ACNGT 2 cut(s) 295, 428
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 4 cut(s) 153, 352, 415, 465
BstKTI GATC 8 cut(s) 33, 114, 118, 125, 209, 375, 448, 484
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 8 cut(s) 30, 111, 115, 122, 206, 372, 445, 481
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstV1I GCAGC 1 cut(s) 511
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 227
BsuTUI ATCGAT 1 cut(s) 114
BtsCI GGATG 4 cut(s) 153, 352, 415, 465
Cac8I GCNNGC 1 cut(s) 11
CciI TCATGA 2 cut(s) 33, 271
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 1 cut(s) 343
CviAII CATG 4 cut(s) 34, 216, 263, 272
CviJI RGCY 8 cut(s) 13, 139, 186, 199, 225, 336, 489, 524
CviKI_1 RGCY 8 cut(s) 13, 139, 186, 199, 225, 336, 489, 524
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 1 cut(s) 227
DpnI GATC 8 cut(s) 32, 113, 117, 124, 208, 374, 447, 483
DpnII GATC 8 cut(s) 30, 111, 115, 122, 206, 372, 445, 481
Eco57I CTGAAG 1 cut(s) 486
Eco81I CCTNAGG 1 cut(s) 227
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 4 cut(s) 37, 219, 266, 275
FaiI YATR 8 cut(s) 35, 217, 254, 256, 264, 273, 327, 534
FatI CATG 4 cut(s) 33, 215, 262, 271
FbaI TGATCA 2 cut(s) 30, 445
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 4 cut(s) 160, 339, 422, 472
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 525
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 485
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 4 cut(s) 37, 219, 266, 275
HinfI GANTC 1 cut(s) 506
HphI GGTGA 3 cut(s) 28, 278, 375
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 4 cut(s) 30, 111, 505, 542
Hpy188III TCNNGA 3 cut(s) 34, 192, 272
Hpy8I GTNNAC 1 cut(s) 424
HpyCH4III ACNGT 2 cut(s) 295, 428
HpyCH4IV ACGT 2 cut(s) 38, 66
HpyCH4V TGCA 3 cut(s) 180, 262, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 2 cut(s) 38, 66
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 4 cut(s) 37, 219, 266, 275
Ksp22I TGATCA 2 cut(s) 30, 445
Kzo9I GATC 8 cut(s) 30, 111, 115, 122, 206, 372, 445, 481
LpnPI CCDG 2 cut(s) 449, 499
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 3 cut(s) 355, 423, 450
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 38, 66
MaeIII GTNAC 2 cut(s) 16, 381
MalI GATC 8 cut(s) 32, 113, 117, 124, 208, 374, 447, 483
MboI GATC 8 cut(s) 30, 111, 115, 122, 206, 372, 445, 481
MboII GAAGA 5 cut(s) 110, 163, 166, 201, 491
MflI RGATCY 1 cut(s) 481
MluCI AATT 3 cut(s) 132, 160, 518
MlyI GAGTC 1 cut(s) 515
MnlI CCTC 9 cut(s) 237, 309, 356, 392, 397, 400, 424, 508, 539
MseI TTAA 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 495
NdeII GATC 8 cut(s) 30, 111, 115, 122, 206, 372, 445, 481
NlaIII CATG 4 cut(s) 37, 219, 266, 275
NmuCI GTSAC 2 cut(s) 16, 381
PagI TCATGA 2 cut(s) 33, 271
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PkrI GCNGC 1 cut(s) 526
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 485
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 8 cut(s) 30, 111, 115, 122, 206, 372, 445, 481
SchI GAGTC 1 cut(s) 515
SfaNI GCATC 3 cut(s) 355, 423, 450
Sse9I AATT 3 cut(s) 132, 160, 518
SsiI CCGC 1 cut(s) 219
SspI AATATT 1 cut(s) 300
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 295, 428
TaiI ACGT 2 cut(s) 41, 69
TaqI TCGA 5 cut(s) 114, 121, 233, 338, 375
TasI AATT 3 cut(s) 132, 160, 518
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TseFI GTSAC 2 cut(s) 16, 381
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 2 cut(s) 16, 381
TspDTI ATGAA 5 cut(s) 164, 173, 201, 269, 288
TspGWI ACGGA 2 cut(s) 187, 345
XapI RAATTY 1 cut(s) 160
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.