Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010434

Physical Location & Seq

Genomic Coordinates Reverse (-)

23757365 .. 23764200

Gene Structure 6836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21070.15

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGGACCTTCAAATCACATTCAAATCGAACCCACTTCTCGTTTCTTCGACCCCATTCAGTCACACATCTCCAAGACCCCTTCTTTTCAACCTGCCCACAAAGCACAGACCCAAAATTTCCCGGCAAAAACCAACCTTTCGAGTTATGGCGTCTGTAAATTCAAATGGGCCTGATAGGTTTTCTTGGCAGAGTCTGACTCGGTCCATACGCCGCGGTTCGGAGCGGTTTTGGTCAGATTTTGGTGAGTCAGTGAAGAAGGAAACTGGGTTTGATTTGAAGGAAGCTAATGTGACGGTAGGTGACTTTGTTGGGCGAGTTGGGGACGGGTTAAAGAAGGGTGGGACTGAGTTGGAGCGGTTTAGGACTGAGTTGCTGCCGGAGTTCGTCAGCTGGAATCGGTGGGAACGTTGGAAGGATCTCAAGACATGGGAATCTAAAAGAGTTGCTGCTTTGATTTTCTATGTTTTTATTACCTTAGTTTCTTGTCAAAGAATATATATAGCAATTCGAGCTCCTCTACAAAATCGTCAAAGAAAAGAGTTGACAGAGGCTTATATGGAGGCAGTGATTCCTGAACCATCTCCAATCAATGTTAGAAGGTTTAAGAAAGGCATGTGGAGGAAGATGACACCCAAAGGCTTGAAGATGAAGAAGTTTGTTGAAGGACCTGATGGAACACTTGTTCATGATAGTTCTTATGTTGGAGAGGATGCGTGGGATGATGATCCACAGCCGCCTCAGGACAATGTGAAACAAATTATTGACAGTAATGTGAAATTAAATCCAGAGGAGAAGAAGGAACTGGAGGAAGACTTGGGAATTTCTGGTCAAGTTCAAGAAGATAGTGGAACATGGCGTGAAAGACTTCAAAAATGGAACGTGATCCTTCAGAAGGAAAAGTTAGCTGAGCAGTTGGACTCTGCAAAATCCAAGTATGTAGTTGAATTTGACATGAAAGAGGTTGAAAACAGTCTTCGCAAAGATGTGGTGGAAAAGGTAACAGAGACACAGGGAACCAGGGCATTATGGATAGCTAAAAGATGGTGGCTATATCGTCCTAGACTTCCATATACGTACTTTCTTCAGAAGCTTGATTGCTCTGAGGTAGCTGCTGTTGTATTTACTGAGGACCTAAAAAGGATATATGTTACCATGAAAGAAGGTTTTCCATTAGAATATGTTGTTGATATCCCCCTAGACCCTTACTTGTTTGAGATTATCTCAAGTTCTGGGGTTGAAGTTGATCTTCTTCAAAAGCGCCAGATCCACTACTTTATGAAAGTTCTAGTTGCATTGGTGCCTGGGATACTTATTCTCTGGCTTATACGCGAGTCTGTGATGCTTCTGCACATCACTTCTAAGCGTTTCCTTTACAAAAAGTATAATCAACTTTTTGACATGGCTTATGCGGAAAATTTTATCTTGCCGGTTGGAGATGTGGGGGAAACAAAATCAATGTCCAAGGAAGTTGTGTTAGGAGGTGATGTTTGGGATCTTCTTGACGAGCTGATGGTTTATATGGGAAATCCAATGCAATACTATGAAAGAGAAGTCAAGTTTGTCCGGGGTGTTCTTCTCTCTGGACCTCCTGGAACTGGCAAAACACTTTTTGCGAGGACATTAGCCAAGGAAAGTGGAATGCCATTTGTTTTTGCTTCGGGTGCTGAGTTCACAGATAGTGAAAAAAGTGGTGCTGCAAGAATTAATGAGATGTTTTCAATTGCAAGGAGAAATGCTCCTTCTTTTGTATTTGTGGATGAAATAGATGCAATTGCTGGAAGGCATGCAAGATTGGATCCTCGAAGGAGAGCAACATTTGAGGCTTTGATTGCACAGCTTGATGGGGAGCCAGATGAGTTAGACCTTGAATTTGTTCGACCTGGGCGTATTGACCGTCGACTGTATATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATTTTTGGTGTGCACAGTGCTGGAAAGCAACTTGCAGAAGATGTAGACTTTGGTAAACTTGTCTTCCGCACTGTTGGTTTTTCTGGGGCAGATATTCGGAATCTTGTCAATGAAGCAGCAATCATGTCAGTGAGGAAAGGGCGTTCAAAGATCTACCAGGAAGACATTGTTGATGTGTTAGACAAACAATTGCTTGAGGGTATGGGTGTACTTCTTACTGAAGAAGAGCAGCGAAAATGCGAACAAAGTGTGTCTTCGGAAAAGAAGAAACTGCTAGCTGTTCATGAAGCTGGTCACATAGTGTTAGCTCATCTGTTTCCTCAATTTGATTGGCATGCATTTTCTCAGCTTCTGCCTGGTGGAAAGGAAACTGCAATATCTGTGTTTTTTCCCCGAGAAGATATGGTAGACCAAGGTTATACGACCTTTGGCTACATGATGATGCAAATGGTGGTAGCTCATGGTGGGCGTTGTGCTGAGCGTGTTGTGTTTGGTGATGACATAACTGATGGAGGAAGAGATGATTTGGAGAAGATAACAAAGATTGCTCGAGAGATGGTAATCAGCCCTCAAAATTCAAGGTTGGGGCTTACATCTTTAACCAAGAGAGTTGGACTTGTGGATCGACCAGATAGTCCAGATGGCGAGTTGATCAGATACAGGTGGGATGACCCCCATGTGATTCCGGCCAATATGACGCTTGAAGTGTCTGAGCTATTTACTCGAGAATTGACAAGGTACATTGAAGAAACAGAAGAACTCGCAATGAATGGTTTGAGAAACAATAGGCACATATTGGACATGATTATAAAGGAACTATTAGAAAAGTCGAGGATTACTGGTTTGGAGGTTGAAGAGAAAATTAAGGATCTTTCTCCTGTGATGTTTGAGGATTTTGTGAAGCCGTTTCAGATAGACTTGGAAAAGGATGGTCCGCTGCCACACAACGATCAGTTGCGGTATAAACCACTGGACATATATCCTGCACCACTGCATAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

981

Amino Acids

112.58

Weight (kDa)

6.18

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79560 AT1G79560 AT1G79560
fragaria_vesca	FvH4_3g14760 FvH4_3g14760 FvH4_3g14760 FvH4_3g14760
malus_domestica	MD05G1229800.v1.1
prunus_persica	Prupe.4G132700_v2.0.a1
pyrus_communis	pycom05g21070
rosa_chinensis	RchiOBHm_Chr5g0024281
rosa_laevigata	RLG00000032790
rosa_multiflora	Rmu_sc0002344.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054900 Rroxscaffold_1G00055780
rosa_rugosa	Rorug05G0083000
rosa_samantha	Rh5AG173500 Rh5CG186500 Rh5DG173000
rosa_wichuraiana	Rw0G000870 Rw5G015670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2747
AasI	GACNNNNNNGTC	1 cut(s)	2571
Acc36I	ACCTGC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	1297
AccBSI	CCGCTC	2 cut(s)	223, 355
AccI	GTMKAC	3 cut(s)	1897, 1983, 2346
AccII	CGCG	2 cut(s)	213, 1329
AciI	CCGC	9 cut(s)	211, 213, 223, 355, 734, 1409, 2005, 2873, 2896
AclI	AACGTT	1 cut(s)	406
AclWI	GGATC	9 cut(s)	423, 719, 877, 1258, 1500, 1790, 1803, 2568, 2814
AcoI	YGGCCR	1 cut(s)	2625
AcsI	RAATTY	8 cut(s)	114, 157, 819, 944, 1414, 1868, 1938, 2512
AcuI	CTGAAG	3 cut(s)	872, 1067, 2178
AcyI	GRCGYC	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	2239
AfaI	GTAC	3 cut(s)	1076, 2148, 2678
AfiI	CCNNNNNNNGG	3 cut(s)	217, 892, 1595
AjnI	CCWGG	6 cut(s)	1016, 1300, 1588, 1879, 2094, 2293
AloI	GAACNNNNNNTCC	4 cut(s)	666, 698, 2065, 2097
Alw21I	GWGCWC	2 cut(s)	514, 1953
Alw26I	GTCTC	1 cut(s)	998
Alw44I	GTGCAC	1 cut(s)	1949
AlwI	GGATC	9 cut(s)	423, 719, 877, 1258, 1500, 1790, 1803, 2568, 2814
AlwNI	CAGNNNCTG	2 cut(s)	193, 2290
Ama87I	CYCGRG	3 cut(s)	2331, 2487, 2661
AoxI	GGCC	2 cut(s)	167, 2625
ApaLI	GTGCAC	1 cut(s)	1949
ApeKI	GCWGC	7 cut(s)	373, 446, 1109, 1694, 2054, 2167, 2875
ApoI	RAATTY	8 cut(s)	114, 157, 819, 944, 1414, 1868, 1938, 2512
ArsI	GACNNNNNNTTYG	4 cut(s)	1442, 1474, 1853, 1885
AseI	ATTAAT	1 cut(s)	1704
Asp700I	GAANNNNTTC	3 cut(s)	864, 1164, 1872
AspLEI	GCGC	1 cut(s)	1260
AspS9I	GGNCC	7 cut(s)	4, 167, 201, 665, 1129, 1583, 2870
AsuC2I	CCSGG	2 cut(s)	121, 1565
AsuHPI	GGTGA	4 cut(s)	254, 311, 1493, 2444
AsuNHI	GCTAGC	1 cut(s)	2212
AvaI	CYCGRG	3 cut(s)	2331, 2487, 2661
AvaII	GGWCC	6 cut(s)	4, 201, 665, 1129, 1583, 2870
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	1953
BamHI	GGATCC	1 cut(s)	1795
BanI	GGYRCC	1 cut(s)	1297
BanII	GRGCYC	1 cut(s)	514
BbsI	GAAGAC	5 cut(s)	816, 965, 1993, 2106, 2184
Bbv12I	GWGCWC	2 cut(s)	514, 1953
BbvI	GCAGC	7 cut(s)	360, 433, 1096, 1681, 2066, 2179, 2862
BccI	CCATC	9 cut(s)	586, 665, 1035, 1504, 1835, 2441, 2488, 2573, 2861
BceAI	ACGGC	1 cut(s)	2827
BciT130I	CCWGG	6 cut(s)	1018, 1302, 1590, 1881, 2096, 2295
BciVI	GTATCC	1 cut(s)	1299
BclI	TGATCA	1 cut(s)	2589
BcnI	CCSGG	2 cut(s)	121, 1565
BcoDI	GTCTC	1 cut(s)	998
BfaI	CTAG	4 cut(s)	1059, 1196, 1286, 2213
BfoI	RGCGCY	1 cut(s)	1261
BfuAI	ACCTGC	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	1299
BglII	AGATCT	1 cut(s)	2088
BisI	GCNGC	9 cut(s)	211, 374, 447, 734, 1110, 1695, 2055, 2168, 2876
BlpI	GCTNAGC	2 cut(s)	906, 2415
BlsI	GCNGC	9 cut(s)	212, 375, 448, 735, 1111, 1696, 2056, 2169, 2877
Bme1390I	CCNGG	8 cut(s)	121, 1018, 1302, 1565, 1590, 1881, 2096, 2295
Bme18I	GGWCC	6 cut(s)	4, 201, 665, 1129, 1583, 2870
BmeT110I	CYCGRG	3 cut(s)	2331, 2487, 2661
BmgT120I	GGNCC	7 cut(s)	4, 167, 201, 665, 1129, 1583, 2870
BmiI	GGNNCC	4 cut(s)	1015, 1299, 1797, 1848
BmrFI	CCNGG	8 cut(s)	121, 1018, 1302, 1565, 1590, 1881, 2096, 2295
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	5 cut(s)	700, 1329, 1756, 1909, 2370
BmtI	GCTAGC	1 cut(s)	2216
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	5 cut(s)	816, 965, 1993, 2106, 2184
BplI	GAGNNNNNCTC	6 cut(s)	181, 213, 1205, 1237, 1720, 1752
BpmI	CTGGAG	1 cut(s)	824
Bpu1102I	GCTNAGC	2 cut(s)	906, 2415
BpuEI	CTTGAG	3 cut(s)	404, 1207, 2153
BpuMI	CCSGG	2 cut(s)	121, 1565
BsaAI	YACGTR	1 cut(s)	1074
BsaBI	GATNNNNATC	2 cut(s)	723, 2498
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	8 cut(s)	211, 1017, 1301, 1461, 1564, 1626, 1880, 2350
BsaXI	ACNNNNNCTCC	2 cut(s)	1470, 1500
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 892, 1595
Bse118I	RCCGGY	1 cut(s)	1426
Bse1I	ACTGG	5 cut(s)	268, 807, 1600, 2782, 2913
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	2709
Bse8I	GATNNNNATC	2 cut(s)	723, 2498
BseBI	CCWGG	6 cut(s)	1018, 1302, 1590, 1881, 2096, 2295
BseDI	CCNNGG	8 cut(s)	211, 1017, 1301, 1461, 1564, 1626, 1880, 2350
BseGI	GGATG	5 cut(s)	715, 724, 1762, 2611, 2872
BseJI	GATNNNNATC	2 cut(s)	723, 2498
BseLI	CCNNNNNNNGG	3 cut(s)	217, 892, 1595
BseMI	GCAATG	1 cut(s)	2709
BseNI	ACTGG	5 cut(s)	268, 807, 1600, 2782, 2913
BseRI	GAGGAG	2 cut(s)	504, 803
BseSI	GKGCMC	1 cut(s)	1953
BseXI	GCAGC	7 cut(s)	360, 433, 1096, 1681, 2066, 2179, 2862
BsgI	GTGCAG	2 cut(s)	1331, 2907
Bsh1236I	CGCG	2 cut(s)	213, 1329
BshFI	GGCC	2 cut(s)	169, 2627
BshNI	GGYRCC	1 cut(s)	1297
BsiHKAI	GWGCWC	2 cut(s)	514, 1953
BsiHKCI	CYCGRG	3 cut(s)	2331, 2487, 2661
BsiSI	CCGG	5 cut(s)	121, 377, 1427, 1564, 2624
BslFI	GGGAC	2 cut(s)	335, 355
BslI	CCNNNNNNNGG	3 cut(s)	217, 892, 1595
BsmAI	GTCTC	1 cut(s)	998
BsmFI	GGGAC	2 cut(s)	335, 355
BsmI	GAATGC	1 cut(s)	1644
BsnI	GGCC	2 cut(s)	169, 2627
BsoBI	CYCGRG	3 cut(s)	2331, 2487, 2661
Bsp1286I	GDGCHC	2 cut(s)	514, 1953
Bsp1720I	GCTNAGC	2 cut(s)	906, 2415
BspACI	CCGC	9 cut(s)	211, 213, 223, 355, 734, 1409, 2005, 2873, 2896
BspANI	GGCC	2 cut(s)	169, 2627
BspFNI	CGCG	2 cut(s)	213, 1329
BspHI	TCATGA	2 cut(s)	685, 2221
BspLI	GGNNCC	4 cut(s)	1015, 1299, 1797, 1848
BspMI	ACCTGC	1 cut(s)	99
BspOI	GCTAGC	1 cut(s)	2216
BspPI	GGATC	9 cut(s)	423, 719, 877, 1258, 1500, 1790, 1803, 2568, 2814
BspQI	GCTCTTC	1 cut(s)	2157
BspT107I	GGYRCC	1 cut(s)	1297
BsrBI	CCGCTC	2 cut(s)	223, 355
BsrDI	GCAATG	1 cut(s)	2709
BsrFI	RCCGGY	1 cut(s)	1426
BsrI	ACTGG	5 cut(s)	268, 807, 1600, 2782, 2913
BssAI	RCCGGY	1 cut(s)	1426
BssECI	CCNNGG	8 cut(s)	211, 1017, 1301, 1461, 1564, 1626, 1880, 2350
BssNI	GRCGYC	1 cut(s)	149
BssT1I	CCWWGG	3 cut(s)	1461, 1626, 2350
Bst2UI	CCWGG	6 cut(s)	1018, 1302, 1590, 1881, 2096, 2295
Bst4CI	ACNGT	7 cut(s)	295, 767, 971, 1895, 1902, 1955, 2011
Bst6I	CTCTTC	3 cut(s)	2157, 2449, 2787
BstACI	GRCGYC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	1933
BstBAI	YACGTR	1 cut(s)	1074
BstC8I	GCNNGC	3 cut(s)	1785, 2214, 2274
BstDSI	CCRYGG	1 cut(s)	211
BstENI	CCTNNNNNAGG	1 cut(s)	890
BstF5I	GGATG	5 cut(s)	715, 724, 1762, 2611, 2872
BstFNI	CGCG	2 cut(s)	213, 1329
BstH2I	RGCGCY	1 cut(s)	1261
BstHHI	GCGC	1 cut(s)	1260
BstMAI	GTCTC	1 cut(s)	998
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 509, 1661, 1829, 1933
BstNI	CCWGG	6 cut(s)	1018, 1302, 1590, 1881, 2096, 2295
BstNSI	RCATGY	3 cut(s)	616, 1787, 2276
BstSCI	CCNGG	8 cut(s)	119, 1016, 1300, 1563, 1588, 1879, 2094, 2293
BstSLI	GKGCMC	1 cut(s)	1953
BstSNI	TACGTA	1 cut(s)	1074
BstUI	CGCG	2 cut(s)	213, 1329
BstV1I	GCAGC	7 cut(s)	360, 433, 1096, 1681, 2066, 2179, 2862
BstV2I	GAAGAC	5 cut(s)	816, 965, 1993, 2106, 2184
BstX2I	RGATCY	6 cut(s)	415, 1263, 1492, 1795, 2088, 2806
BstYI	RGATCY	6 cut(s)	415, 1263, 1492, 1795, 2088, 2806
Bsu36I	CCTNAGG	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	1299
BsuRI	GGCC	2 cut(s)	169, 2627
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	5 cut(s)	715, 724, 1762, 2611, 2872
BtsI	GCAGTG	2 cut(s)	570, 2927
BtsIMutI	CAGTG	7 cut(s)	255, 570, 1960, 2007, 2073, 2906, 2927
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	1785, 2214, 2274
CaiI	CAGNNNCTG	2 cut(s)	193, 2290
CciI	TCATGA	2 cut(s)	685, 2221
CfoI	GCGC	1 cut(s)	1260
Cfr10I	RCCGGY	1 cut(s)	1426
Cfr13I	GGNCC	7 cut(s)	4, 167, 201, 665, 1129, 1583, 2870
Cfr42I	CCGCGG	1 cut(s)	214
CseI	GACGC	2 cut(s)	138, 2644
Csp6I	GTAC	3 cut(s)	1075, 2147, 2677
CspCI	CAANNNNNGTGG	2 cut(s)	1615, 1650
CviQI	GTAC	3 cut(s)	1075, 2147, 2677
DraIII	CACNNNGTG	1 cut(s)	2239
DrdI	GACNNNNNNGTC	1 cut(s)	2571
DseDI	GACNNNNNNGTC	1 cut(s)	2571
EaeI	YGGCCR	1 cut(s)	2625
Eam1104I	CTCTTC	3 cut(s)	2157, 2449, 2787
EarI	CTCTTC	3 cut(s)	2157, 2449, 2787
Ecl136II	GAGCTC	1 cut(s)	512
Eco105I	TACGTA	1 cut(s)	1074
Eco130I	CCWWGG	3 cut(s)	1461, 1626, 2350
Eco24I	GRGCYC	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	1189
Eco47I	GGWCC	6 cut(s)	4, 201, 665, 1129, 1583, 2870
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	3 cut(s)	872, 1067, 2178
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	3 cut(s)	2331, 2487, 2661
EcoICRI	GAGCTC	1 cut(s)	512
EcoNI	CCTNNNNNAGG	1 cut(s)	890
EcoO109I	RGGNCCY	2 cut(s)	665, 1129
EcoRII	CCWGG	6 cut(s)	1016, 1300, 1588, 1879, 2094, 2293
EcoRV	GATATC	1 cut(s)	1189
EcoT14I	CCWWGG	3 cut(s)	1461, 1626, 2350
EcoT22I	ATGCAT	1 cut(s)	2278
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	3 cut(s)	1461, 1626, 2350
FalI	AAGNNNNNCTT	4 cut(s)	1230, 1262, 2176, 2208
FaqI	GGGAC	2 cut(s)	335, 355
FbaI	TGATCA	1 cut(s)	2589
FblI	GTMKAC	3 cut(s)	1897, 1983, 2346
Fnu4HI	GCNGC	9 cut(s)	211, 374, 447, 734, 1110, 1695, 2055, 2168, 2876
FokI	GGATG	5 cut(s)	722, 731, 1769, 2618, 2879
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	9 cut(s)	211, 374, 447, 734, 1110, 1695, 2055, 2168, 2876
FspBI	CTAG	4 cut(s)	1059, 1196, 1286, 2213
GlaI	GCGC	1 cut(s)	1259
GluI	GCNGC	9 cut(s)	211, 374, 447, 734, 1110, 1695, 2055, 2168, 2876
GsuI	CTGGAG	1 cut(s)	824
HaeII	RGCGCY	1 cut(s)	1261
HaeIII	GGCC	2 cut(s)	169, 2627
HapII	CCGG	5 cut(s)	121, 377, 1427, 1564, 2624
HgaI	GACGC	2 cut(s)	138, 2644
HhaI	GCGC	1 cut(s)	1260
Hin1I	GRCGYC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	1258
HinP1I	GCGC	1 cut(s)	1258
HincII	GTYRAC	2 cut(s)	543, 1898
HindII	GTYRAC	2 cut(s)	543, 1898
HindIII	AAGCTT	1 cut(s)	1088
HpaII	CCGG	5 cut(s)	121, 377, 1427, 1564, 2624
HphI	GGTGA	4 cut(s)	254, 311, 1493, 2444
Hpy166II	GTNNAC	8 cut(s)	543, 1671, 1898, 1951, 1984, 1994, 2147, 2347
Hpy8I	GTNNAC	8 cut(s)	543, 1671, 1898, 1951, 1984, 1994, 2147, 2347
Hpy99I	CGWCG	1 cut(s)	1899
HpyCH4III	ACNGT	7 cut(s)	295, 767, 971, 1895, 1902, 1955, 2011
HpyCH4IV	ACGT	3 cut(s)	406, 879, 1073
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 509, 1661, 1829, 1933
HpySE526I	ACGT	3 cut(s)	406, 879, 1073
Hsp92I	GRCGYC	1 cut(s)	149
HspAI	GCGC	1 cut(s)	1258
Ksp22I	TGATCA	1 cut(s)	2589
KspI	CCGCGG	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	2157
LmnI	GCTCC	5 cut(s)	220, 352, 517, 1741, 1846
Lsp1109I	GCAGC	7 cut(s)	360, 433, 1096, 1681, 2066, 2179, 2862
LweI	GCATC	5 cut(s)	700, 1329, 1756, 1909, 2370
MaeI	CTAG	4 cut(s)	1059, 1196, 1286, 2213
MaeII	ACGT	3 cut(s)	406, 879, 1073
MaeIII	GTNAC	6 cut(s)	59, 289, 299, 997, 1147, 2231
MbiI	CCGCTC	2 cut(s)	223, 355
MfeI	CAATTG	3 cut(s)	1719, 1770, 2126
MflI	RGATCY	6 cut(s)	415, 1263, 1492, 1795, 2088, 2806
MhlI	GDGCHC	2 cut(s)	514, 1953
MlyI	GAGTC	5 cut(s)	190, 199, 254, 911, 1340
MmeI	TCCRAC	6 cut(s)	330, 389, 682, 894, 1411, 2530
Mph1103I	ATGCAT	1 cut(s)	2278
MroXI	GAANNNNTTC	3 cut(s)	864, 1164, 1872
MseI	TTAA	7 cut(s)	329, 603, 779, 1704, 2537, 2802, 2941
MslI	CAYNNNNRTG	2 cut(s)	2066, 2378
MspA1I	CMGCKG	3 cut(s)	213, 390, 2875
MspI	CCGG	5 cut(s)	121, 377, 1427, 1564, 2624
MspR9I	CCNGG	8 cut(s)	121, 1018, 1302, 1565, 1590, 1881, 2096, 2295
MunI	CAATTG	3 cut(s)	1719, 1770, 2126
Mva1269I	GAATGC	1 cut(s)	1644
MvaI	CCWGG	6 cut(s)	1018, 1302, 1590, 1881, 2096, 2295
MvnI	CGCG	2 cut(s)	213, 1329
MwoI	GCNNNNNNNGC	5 cut(s)	100, 509, 1661, 1829, 1933
NciI	CCSGG	2 cut(s)	121, 1565
NheI	GCTAGC	1 cut(s)	2212
NlaIV	GGNNCC	4 cut(s)	1015, 1299, 1797, 1848
NmuCI	GTSAC	4 cut(s)	59, 289, 299, 2231
NsiI	ATGCAT	1 cut(s)	2278
NspI	RCATGY	3 cut(s)	616, 1787, 2276
PaeI	GCATGC	2 cut(s)	1787, 2276
PaeR7I	CTCGAG	2 cut(s)	2487, 2661
PagI	TCATGA	2 cut(s)	685, 2221
PciSI	GCTCTTC	1 cut(s)	2157
PcsI	WCGNNNNNNNCGW	2 cut(s)	403, 1882
PctI	GAATGC	1 cut(s)	1644
PdmI	GAANNNNTTC	3 cut(s)	864, 1164, 1872
PfeI	GAWTC	5 cut(s)	394, 431, 568, 2038, 2620
PflFI	GACNNNGTC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	1588
PkrI	GCNGC	9 cut(s)	212, 375, 448, 735, 1111, 1696, 2056, 2169, 2877
PleI	GAGTC	5 cut(s)	190, 198, 253, 911, 1339
PpsI	GAGTC	5 cut(s)	190, 198, 253, 911, 1339
Ppu21I	YACGTR	1 cut(s)	1074
PpuMI	RGGWCCY	2 cut(s)	665, 1129
PshBI	ATTAAT	1 cut(s)	1704
PsiI	TTATAA	1 cut(s)	2747
Psp124BI	GAGCTC	1 cut(s)	514
Psp1406I	AACGTT	1 cut(s)	406
Psp5II	RGGWCCY	2 cut(s)	665, 1129
Psp6I	CCWGG	6 cut(s)	1016, 1300, 1588, 1879, 2094, 2293
PspGI	CCWGG	6 cut(s)	1016, 1300, 1588, 1879, 2094, 2293
PspN4I	GGNNCC	4 cut(s)	1015, 1299, 1797, 1848
PspPI	GGNCC	7 cut(s)	4, 167, 201, 665, 1129, 1583, 2870
PspPPI	RGGWCCY	2 cut(s)	665, 1129
PstNI	CAGNNNCTG	2 cut(s)	193, 2290
PsuI	RGATCY	6 cut(s)	415, 1263, 1492, 1795, 2088, 2806
PsyI	GACNNNGTC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	390
RsaI	GTAC	3 cut(s)	1076, 2148, 2678
RsaNI	GTAC	3 cut(s)	1075, 2147, 2677
RseI	CAYNNNNRTG	2 cut(s)	2066, 2378
SacI	GAGCTC	1 cut(s)	514
SacII	CCGCGG	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	1896
SapI	GCTCTTC	1 cut(s)	2157
SaqAI	TTAA	7 cut(s)	329, 603, 779, 1704, 2537, 2802, 2941
SatI	GCNGC	9 cut(s)	211, 374, 447, 734, 1110, 1695, 2055, 2168, 2876
Sau96I	GGNCC	7 cut(s)	4, 167, 201, 665, 1129, 1583, 2870
SchI	GAGTC	5 cut(s)	190, 199, 254, 911, 1340
ScrFI	CCNGG	8 cut(s)	121, 1018, 1302, 1565, 1590, 1881, 2096, 2295
SduI	GDGCHC	2 cut(s)	514, 1953
SfaNI	GCATC	5 cut(s)	700, 1329, 1756, 1909, 2370
Sfr274I	CTCGAG	2 cut(s)	2487, 2661
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	6 cut(s)	4, 201, 665, 1129, 1583, 2870
SlaI	CTCGAG	2 cut(s)	2487, 2661
SmiMI	CAYNNNNRTG	2 cut(s)	2066, 2378
SmlI	CTYRAG	5 cut(s)	419, 1222, 2132, 2487, 2661
SmoI	CTYRAG	5 cut(s)	419, 1222, 2132, 2487, 2661
SnaBI	TACGTA	1 cut(s)	1074
SphI	GCATGC	2 cut(s)	1787, 2276
SsiI	CCGC	9 cut(s)	211, 213, 223, 355, 734, 1409, 2005, 2873, 2896
SspMI	CTAG	4 cut(s)	1059, 1196, 1286, 2213
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	8 cut(s)	119, 1016, 1300, 1563, 1588, 1879, 2094, 2293
StyI	CCWWGG	3 cut(s)	1461, 1626, 2350
TaaI	ACNGT	7 cut(s)	295, 767, 971, 1895, 1902, 1955, 2011
TaiI	ACGT	3 cut(s)	409, 882, 1076
TaqII	GACCGA	1 cut(s)	189
TatI	WGTACW	1 cut(s)	2146
TauI	GCSGC	2 cut(s)	213, 736
TfiI	GAWTC	5 cut(s)	394, 431, 568, 2038, 2620
Tru1I	TTAA	7 cut(s)	329, 603, 779, 1704, 2537, 2802, 2941
Tru9I	TTAA	7 cut(s)	329, 603, 779, 1704, 2537, 2802, 2941
TscAI	CASTG	7 cut(s)	255, 570, 1960, 2014, 2073, 2913, 2934
TseFI	GTSAC	4 cut(s)	59, 289, 299, 2231
TseI	GCWGC	7 cut(s)	373, 446, 1109, 1694, 2054, 2167, 2875
Tsp45I	GTSAC	4 cut(s)	59, 289, 299, 2231
TspRI	CASTG	7 cut(s)	255, 570, 1960, 2014, 2073, 2913, 2934
Tth111I	GACNNNGTC	1 cut(s)	199
VneI	GTGCAC	1 cut(s)	1949
VpaK11BI	GGWCC	6 cut(s)	4, 201, 665, 1129, 1583, 2870
VspI	ATTAAT	1 cut(s)	1704
XagI	CCTNNNNNAGG	1 cut(s)	890
XapI	RAATTY	8 cut(s)	114, 157, 819, 944, 1414, 1868, 1938, 2512
XceI	RCATGY	3 cut(s)	616, 1787, 2276
XhoI	CTCGAG	2 cut(s)	2487, 2661
XmiI	GTMKAC	3 cut(s)	1897, 1983, 2346
XmnI	GAANNNNTTC	3 cut(s)	864, 1164, 1872
XspI	CTAG	4 cut(s)	1059, 1196, 1286, 2213
Zsp2I	ATGCAT	1 cut(s)	2278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.