Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010434

Physical Location & Seq

Genomic Coordinates Reverse (-)

18609082 .. 18617794

Gene Structure 8713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG186500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2844 bp

ATGGACCTCATACTCCCCTACAAGCCAAACCCACTTCTCTGTTCTTCAACTGCACTCACCCATTTAACCCCCAAAACCCTTCTCTTCAAGCTCCCCACAAAGCAAAGACTCAAAATTTCCCGGAAAAATTCAAACTTTCGTGTTAAAGCCTCTGCAAACCCAAATGGGCCTGATGGGTTTTCTTGGGTGAGTCTGGCTCGGTCTATACGCCGCGGTTCGGAGCAGTTCTGGTCCAATTTTGGTGACTCGGTGAAGAAGGAAACTGGGTTTGATTTGAATGAGGTGAATGTGAAGGTGGGGGAGTATTTGGGGCAAGCTGGGGAAGGATTAGAGAGAGGTGGGACTGAGTTGGAACGGTTTAGGACCGAGTTAGTGCCCGAGTTTGTGAGTTGGAATCAGTGGGAAAGATGGAAGGATGTCAAGACATGGGAACCTAAAAGAATTGCTGCATTGGTTTTCTATGTTTTTGTTGCGGTAGTTTCGTGTCAAAGAATATATGTAGCAATTCGAGCTCCTATCCAAGATCGTCAGAGGAAAGAGTTGACAGAGGCTTATATGGAGGCAGTGATTCCTGAGCCATCTCCGAGTAATGTTAGAAAGCTTAAGAAGAGTATGTGGAGGAAGACGACGCCCAAAGGCCTGAAAATGAAGAAGTTTGTTGAAGGACCTGATGGAACACTTGTTCATGATAGTTCTTATGTGGGAGAGGATGCATGGGATGATGATCCGCAGCTGCCTCAGGACAATGTGAAACAATTTATTGACAGTGATATAAAATTAAATCCAGAAGAAAAGAAGGAATTGAAAGAAGACCTGGGAATATCTGGTGAAGTTCAAGAGGATACTGGAACATGGCGTGAAAGACTTCAGAAATGGAAGGAGATCCTCCAAAAAGAAAAGTTAGCGGAGCAGTTGGACTCTGCAAATTCCAAGTATGTAGTTGAATTTGACATGAAAGAGGTTGAAAACAGTCTTCGCAAGGATGTAGTGGAGAAGGTAACAGAGACACAAGGAACAAGGGCGTTATGGATAGCTAAAAGATGGTGGCTTTATCGTCCCAAACTTCCTTATACCTACTTTCTTCAAAAGCTTGACAGCTCTGAGGTTGCTGCTGTTGTATTTACAGAAGACCTAAAAAGAATATATGTTACTATGAAAGAAGGTTTTCCATTAGAATATGTTGTTGATATCCCCCTAGACCCATATTTGTTTGAGAATATCTCAAGTTCTGGAGCTGAAGTTGATCTTCTTCAGAAACGCCAGATCCACTACTTTATGAAGGTTGTGATTGCATTGGTGCCTGGGTTACTCATTCTCTGGCTAATACGCGAGTCTGTGATGCTTCTGCATATCACTTCTAAGCGTTTTCTCTACAAAAAGTATAATCAACTTTTTGATATGGCTTATGCAGAAAATTTTATACTGCCTGTTGGAGATGTAGGGGAAACAAAATCCATGTCCAAGGAAGTTGTGTTAGGAGGTGATGTTTGGGATCTTCTTGATGAGCTGATGATTTACATGGGAAATCCAATGCAATACTATGAAAAAGATGTGAAGTTTGTCAGGGCTCCTTGTTTTGTATTTGTGGATGAGATTGATGCTATTGCTGGAAGGCATGCAAGACAGGATCCTAGAAGAAGAGCAACATTTGAGGCTTTGATTGCACAGCTTGATGGGGAGAAGGAAAAAACTGGCATTGATCGCTTCTCTCTCAGACAAGCTGTGATATTCATCTGTGCTACCAACAGGCCAGATGAATTAGACCTTGAATTTGTTCGATCTGGACGTATTGACCGTCGACTGTACATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATTTTTAAAGTGCACAGCGCAGGAAAGCAACTTGCAGAAGATGTAGACTTTGGAAAAGTTGTCTTCCGTACGGTTGGTTTTTCTGGGGCAGATATTCGGAATCTTGTAAATGAAGCAGCAATTATGTCAGTGAGGAAAGGACGTTCAGAGATATATCAGGAAGACATAGTGGATGTGTTAGATAAACAATTGCTTGAGGGCATGGGTGTACTTCTTACTGAGGAAGAGCAGCGGAAATGCGAACGAAGTGTGTCTTCTGAAAAGAAGAAACTGCTGGCTGTTCATGAAGCTGGTCACATACTATTAGCTCATCTGTTTCCTCAATTTGACTGGCATGCATTTTCTCAACTTCTGCCTGGTGGGAAGGAAACTGCAGTATCTGTATTCTATCCCCGAGAAGATATGGTAGACCAAGGTTATACAACCTTTGGCTACATGAAGATGCAGATGGTGGTAGCTCATGGTGGGCGTTGCGCTGAACGTGTTGTGTATGGTGATGACATAACTGATGGAGGAAGAGATGATCTGGAAAAGCTAACAAAGATTGCTCGAGAGATGGTAATTAGCCCTCAAAACTCAAGATTGGGGCTTACAGCTCTAACAAAAAGAATTGGACTAATGGATCGACCAGATAGTCCAGATGGCGAATTGATAAGATACAGGTGGGAGGACCCCAATGTGATTCCAGCCAATATGACTCTTGAAGTGTCTGAGCTGTTTACCCGAGAGTTGACAAGGTACATCGAAGAAACAGAAGAACTTGCGATGAAGGGTTTGAGAAACAACAGGCACATTCTGGACTTGATTACTGAGGAACTATTAGAGAAGTCAAGGATTACTGGATTGGAGGTTATAGAGAAAATGAAGGCCCTTTCTCCAGTCATGTTCGAGGATTTTGTAACGCCATATCAGATAAACTTGGAAGAGGATGGACCGTTGCCACATAATGACCAGTTGCGATATCAACCATTGGACATATATCCTGCACCACTGCACAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

947

Amino Acids

109.09

Weight (kDa)

5.8

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	522 - 604	3.9e-15	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	627 - 669	5.2e-13	AAA+ lid domain
Peptidase_M41	PF01434	696 - 897	7e-23	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79560 AT1G79560 AT1G79560
fragaria_vesca	FvH4_3g14760 FvH4_3g14760 FvH4_3g14760 FvH4_3g14760
malus_domestica	MD05G1229800.v1.1
prunus_persica	Prupe.4G132700_v2.0.a1
pyrus_communis	pycom05g21070
rosa_chinensis	RchiOBHm_Chr5g0024281
rosa_laevigata	RLG00000032790
rosa_multiflora	Rmu_sc0002344.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054900 Rroxscaffold_1G00055780
rosa_rugosa	Rorug05G0083000
rosa_samantha	Rh5AG173500 Rh5CG186500 Rh5DG173000
rosa_wichuraiana	Rw0G000870 Rw5G015670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2472
AccB1I	GGYRCC	1 cut(s)	1297
AccI	GTMKAC	3 cut(s)	1798, 1884, 2247
AccII	CGCG	2 cut(s)	213, 1329
AciI	CCGC	6 cut(s)	211, 213, 473, 728, 905, 2071
AclWI	GGATC	7 cut(s)	719, 877, 1258, 1500, 1622, 1635, 2469
AcsI	RAATTY	7 cut(s)	114, 127, 925, 944, 1414, 1769, 1839
AcuI	CTGAAG	3 cut(s)	851, 1235, 1257
AcyI	GRCGYC	1 cut(s)	629
AfaI	GTAC	4 cut(s)	1805, 1909, 2049, 2579
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	602
AflIII	ACRYGT	1 cut(s)	2320
AjnI	CCWGG	3 cut(s)	813, 1300, 2194
AloI	GAACNNNNNNTCC	4 cut(s)	666, 698, 1966, 1998
Alw21I	GWGCWC	2 cut(s)	514, 1854
Alw26I	GTCTC	1 cut(s)	998
Alw44I	GTGCAC	1 cut(s)	1850
AlwI	GGATC	7 cut(s)	719, 877, 1258, 1500, 1622, 1635, 2469
AlwNI	CAGNNNCTG	1 cut(s)	2219
Ama87I	CYCGRG	4 cut(s)	377, 2232, 2388, 2562
AoxI	GGCC	4 cut(s)	167, 637, 1748, 2706
ApaLI	GTGCAC	1 cut(s)	1850
ApeKI	GCWGC	6 cut(s)	446, 730, 733, 1109, 1955, 2068
ApoI	RAATTY	7 cut(s)	114, 127, 925, 944, 1414, 1769, 1839
ArsI	GACNNNNNNTTYG	4 cut(s)	1442, 1474, 1754, 1786
Asp700I	GAANNNNTTC	3 cut(s)	864, 1164, 1773
AspLEI	GCGC	2 cut(s)	1859, 2315
AspS9I	GGNCC	8 cut(s)	4, 167, 231, 363, 665, 2509, 2707, 2771
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	8 cut(s)	49, 199, 254, 262, 295, 839, 1493, 2345
AvaI	CYCGRG	4 cut(s)	377, 2232, 2388, 2562
AvaII	GGWCC	6 cut(s)	4, 231, 363, 665, 2509, 2771
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	2 cut(s)	378, 1854
BaeI	ACNNNNGTAYC	2 cut(s)	2199, 2232
BamHI	GGATCC	1 cut(s)	1627
BanI	GGYRCC	1 cut(s)	1297
BanII	GRGCYC	2 cut(s)	514, 1570
BbsI	GAAGAC	7 cut(s)	629, 816, 965, 1134, 1894, 2007, 2085
Bbv12I	GWGCWC	2 cut(s)	514, 1854
BbvI	GCAGC	6 cut(s)	433, 720, 742, 1096, 1967, 2080
BciT130I	CCWGG	3 cut(s)	815, 1302, 2196
BciVI	GTATCC	1 cut(s)	835
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	998
BfaI	CTAG	2 cut(s)	1196, 1632
BfmI	CTRYAG	1 cut(s)	2211
BfrI	CTTAAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	835
BisI	GCNGC	7 cut(s)	211, 447, 731, 734, 1110, 1956, 2069
BlsI	GCNGC	7 cut(s)	212, 448, 732, 735, 1111, 1957, 2070
Bme1390I	CCNGG	4 cut(s)	121, 815, 1302, 2196
Bme18I	GGWCC	6 cut(s)	4, 231, 363, 665, 2509, 2771
BmeT110I	CYCGRG	4 cut(s)	377, 2232, 2388, 2562
BmgT120I	GGNCC	8 cut(s)	4, 167, 231, 363, 665, 2509, 2707, 2771
BmiI	GGNNCC	5 cut(s)	432, 1299, 1569, 1629, 2511
BmrFI	CCNGG	4 cut(s)	121, 815, 1302, 2196
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	5 cut(s)	700, 1329, 1588, 1810, 2271
BmuI	ACTGGG	1 cut(s)	273
BpiI	GAAGAC	7 cut(s)	629, 816, 965, 1134, 1894, 2007, 2085
BplI	GAGNNNNNCTC	4 cut(s)	181, 213, 1205, 1237
BpmI	CTGGAG	2 cut(s)	1251, 2700
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	3 cut(s)	1207, 2054, 2401
BpuMI	CCSGG	1 cut(s)	121
BsaBI	GATNNNNATC	2 cut(s)	723, 1730
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	5 cut(s)	211, 814, 1301, 1461, 2251
BsaXI	ACNNNNNCTCC	4 cut(s)	1224, 1254, 1470, 1500
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	7 cut(s)	268, 850, 1696, 2174, 2683, 2717, 2791
Bse21I	CCTNAGG	1 cut(s)	738
Bse8I	GATNNNNATC	2 cut(s)	723, 1730
BseBI	CCWGG	3 cut(s)	815, 1302, 2196
BseDI	CCNNGG	5 cut(s)	211, 814, 1301, 1461, 2251
BseGI	GGATG	7 cut(s)	421, 715, 724, 988, 1594, 2017, 2773
BseJI	GATNNNNATC	2 cut(s)	723, 1730
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	8 cut(s)	336, 564, 752, 1092, 1726, 2049, 2541, 2640
BseNI	ACTGG	7 cut(s)	268, 850, 1696, 2174, 2683, 2717, 2791
BseSI	GKGCMC	2 cut(s)	378, 1854
BseXI	GCAGC	6 cut(s)	433, 720, 742, 1096, 1967, 2080
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	3 cut(s)	36, 2808, 2816
Bsh1236I	CGCG	2 cut(s)	213, 1329
BshFI	GGCC	4 cut(s)	169, 639, 1750, 2708
BshNI	GGYRCC	1 cut(s)	1297
BsiHKAI	GWGCWC	2 cut(s)	514, 1854
BsiHKCI	CYCGRG	4 cut(s)	377, 2232, 2388, 2562
BsiSI	CCGG	1 cut(s)	121
BsiWI	CGTACG	1 cut(s)	1907
BslFI	GGGAC	2 cut(s)	355, 1041
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	998
BsmFI	GGGAC	2 cut(s)	355, 1041
BsnI	GGCC	4 cut(s)	169, 639, 1750, 2708
BsoBI	CYCGRG	4 cut(s)	377, 2232, 2388, 2562
Bsp1286I	GDGCHC	4 cut(s)	378, 514, 1570, 1854
Bsp1407I	TGTACA	1 cut(s)	1803
BspACI	CCGC	6 cut(s)	211, 213, 473, 728, 905, 2071
BspANI	GGCC	4 cut(s)	169, 639, 1750, 2708
BspCNI	CTCAG	8 cut(s)	337, 565, 751, 1093, 1725, 2050, 2542, 2641
BspFNI	CGCG	2 cut(s)	213, 1329
BspHI	TCATGA	2 cut(s)	685, 2122
BspLI	GGNNCC	5 cut(s)	432, 1299, 1569, 1629, 2511
BspMAI	CTGCAG	1 cut(s)	2215
BspPI	GGATC	7 cut(s)	719, 877, 1258, 1500, 1622, 1635, 2469
BspQI	GCTCTTC	2 cut(s)	1633, 2058
BspT107I	GGYRCC	1 cut(s)	1297
BspTI	CTTAAG	1 cut(s)	602
BsrGI	TGTACA	1 cut(s)	1803
BsrI	ACTGG	7 cut(s)	268, 850, 1696, 2174, 2683, 2717, 2791
BssECI	CCNNGG	5 cut(s)	211, 814, 1301, 1461, 2251
BssNI	GRCGYC	1 cut(s)	629
BssT1I	CCWWGG	2 cut(s)	1461, 2251
Bst2UI	CCWGG	3 cut(s)	815, 1302, 2196
Bst4CI	ACNGT	7 cut(s)	357, 767, 971, 1796, 1803, 1912, 2775
Bst6I	CTCTTC	6 cut(s)	89, 602, 1633, 2058, 2350, 2757
BstACI	GRCGYC	1 cut(s)	629
BstAFI	CTTAAG	1 cut(s)	602
BstAPI	GCANNNNNTGC	1 cut(s)	1834
BstAUI	TGTACA	1 cut(s)	1803
BstC8I	GCNNGC	4 cut(s)	315, 1617, 2115, 2175
BstDEI	CTNAG	9 cut(s)	345, 573, 738, 1101, 1359, 1712, 2058, 2550, 2649
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	7 cut(s)	421, 715, 724, 988, 1594, 2017, 2773
BstFNI	CGCG	2 cut(s)	213, 1329
BstHHI	GCGC	2 cut(s)	1859, 2315
BstMAI	GTCTC	1 cut(s)	998
BstMWI	GCNNNNNNNGC	4 cut(s)	509, 1661, 1701, 1834
BstNI	CCWGG	3 cut(s)	815, 1302, 2196
BstNSI	RCATGY	2 cut(s)	1619, 2177
BstSCI	CCNGG	4 cut(s)	119, 813, 1300, 2194
BstSFI	CTRYAG	1 cut(s)	2211
BstSLI	GKGCMC	2 cut(s)	378, 1854
BstUI	CGCG	2 cut(s)	213, 1329
BstV1I	GCAGC	6 cut(s)	433, 720, 742, 1096, 1967, 2080
BstV2I	GAAGAC	7 cut(s)	629, 816, 965, 1134, 1894, 2007, 2085
BstX2I	RGATCY	4 cut(s)	882, 1263, 1492, 1627
BstYI	RGATCY	4 cut(s)	882, 1263, 1492, 1627
Bsu36I	CCTNAGG	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	4 cut(s)	169, 639, 1750, 2708
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	2618
BtsCI	GGATG	7 cut(s)	421, 715, 724, 988, 1594, 2017, 2773
BtsI	GCAGTG	2 cut(s)	570, 2828
BtsIMutI	CAGTG	5 cut(s)	404, 570, 772, 1974, 2828
Cac8I	GCNNGC	4 cut(s)	315, 1617, 2115, 2175
CaiI	CAGNNNCTG	1 cut(s)	2219
CciI	TCATGA	2 cut(s)	685, 2122
CfoI	GCGC	2 cut(s)	1859, 2315
Cfr13I	GGNCC	8 cut(s)	4, 167, 231, 363, 665, 2509, 2707, 2771
Cfr42I	CCGCGG	1 cut(s)	214
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	4 cut(s)	1804, 1908, 2048, 2578
CviQI	GTAC	4 cut(s)	1804, 1908, 2048, 2578
DdeI	CTNAG	9 cut(s)	345, 573, 738, 1101, 1359, 1712, 2058, 2550, 2649
DraI	TTTAAA	1 cut(s)	1846
DrdI	GACNNNNNNGTC	1 cut(s)	2472
DseDI	GACNNNNNNGTC	1 cut(s)	2472
Eam1104I	CTCTTC	6 cut(s)	89, 602, 1633, 2058, 2350, 2757
EarI	CTCTTC	6 cut(s)	89, 602, 1633, 2058, 2350, 2757
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	2 cut(s)	1461, 2251
Eco147I	AGGCCT	1 cut(s)	639
Eco24I	GRGCYC	2 cut(s)	514, 1570
Eco32I	GATATC	2 cut(s)	1189, 2801
Eco47I	GGWCC	6 cut(s)	4, 231, 363, 665, 2509, 2771
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	3 cut(s)	851, 1235, 1257
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	4 cut(s)	377, 2232, 2388, 2562
EcoICRI	GAGCTC	1 cut(s)	512
EcoO109I	RGGNCCY	3 cut(s)	665, 2509, 2707
EcoRII	CCWGG	3 cut(s)	813, 1300, 2194
EcoRV	GATATC	2 cut(s)	1189, 2801
EcoT14I	CCWWGG	2 cut(s)	1461, 2251
EcoT22I	ATGCAT	2 cut(s)	715, 2179
EcoT38I	GRGCYC	2 cut(s)	514, 1570
ErhI	CCWWGG	2 cut(s)	1461, 2251
FalI	AAGNNNNNCTT	4 cut(s)	1230, 1262, 2077, 2109
FaqI	GGGAC	2 cut(s)	355, 1041
FblI	GTMKAC	3 cut(s)	1798, 1884, 2247
Fnu4HI	GCNGC	7 cut(s)	211, 447, 731, 734, 1110, 1956, 2069
FokI	GGATG	7 cut(s)	428, 722, 731, 995, 1601, 2024, 2780
FriOI	GRGCYC	2 cut(s)	514, 1570
Fsp4HI	GCNGC	7 cut(s)	211, 447, 731, 734, 1110, 1956, 2069
FspBI	CTAG	2 cut(s)	1196, 1632
GlaI	GCGC	2 cut(s)	1858, 2314
GluI	GCNGC	7 cut(s)	211, 447, 731, 734, 1110, 1956, 2069
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	2 cut(s)	1251, 2700
HaeIII	GGCC	4 cut(s)	169, 639, 1750, 2708
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	1 cut(s)	637
HhaI	GCGC	2 cut(s)	1859, 2315
Hin1I	GRCGYC	1 cut(s)	629
Hin6I	GCGC	2 cut(s)	1857, 2313
HinP1I	GCGC	2 cut(s)	1857, 2313
HincII	GTYRAC	3 cut(s)	543, 1799, 2571
HindII	GTYRAC	3 cut(s)	543, 1799, 2571
HindIII	AAGCTT	2 cut(s)	599, 1088
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	8 cut(s)	49, 199, 254, 262, 295, 839, 1493, 2345
Hpy166II	GTNNAC	8 cut(s)	543, 1799, 1852, 1885, 2048, 2248, 2559, 2571
Hpy8I	GTNNAC	8 cut(s)	543, 1799, 1852, 1885, 2048, 2248, 2559, 2571
Hpy99I	CGWCG	2 cut(s)	631, 1800
HpyCH4III	ACNGT	7 cut(s)	357, 767, 971, 1796, 1803, 1912, 2775
HpyCH4IV	ACGT	3 cut(s)	1786, 1981, 2320
HpyF10VI	GCNNNNNNNGC	4 cut(s)	509, 1661, 1701, 1834
HpyF3I	CTNAG	9 cut(s)	345, 573, 738, 1101, 1359, 1712, 2058, 2550, 2649
HpySE526I	ACGT	3 cut(s)	1786, 1981, 2320
Hsp92I	GRCGYC	1 cut(s)	629
HspAI	GCGC	2 cut(s)	1857, 2313
KspI	CCGCGG	1 cut(s)	214
LguI	GCTCTTC	2 cut(s)	1633, 2058
LmnI	GCTCC	6 cut(s)	96, 220, 517, 907, 1232, 1573
Lsp1109I	GCAGC	6 cut(s)	433, 720, 742, 1096, 1967, 2080
LweI	GCATC	5 cut(s)	700, 1329, 1588, 1810, 2271
MaeI	CTAG	2 cut(s)	1196, 1632
MaeII	ACGT	3 cut(s)	1786, 1981, 2320
MaeIII	GTNAC	6 cut(s)	242, 997, 1147, 1305, 2132, 2737
MfeI	CAATTG	1 cut(s)	2027
MflI	RGATCY	4 cut(s)	882, 1263, 1492, 1627
MhlI	GDGCHC	4 cut(s)	378, 514, 1570, 1854
MlyI	GAGTC	6 cut(s)	102, 199, 239, 911, 1340, 2530
MmeI	TCCRAC	4 cut(s)	330, 371, 894, 1411
Mph1103I	ATGCAT	2 cut(s)	715, 2179
MroXI	GAANNNNTTC	3 cut(s)	864, 1164, 1773
MseI	TTAA	6 cut(s)	65, 144, 603, 779, 1845, 2842
MslI	CAYNNNNRTG	1 cut(s)	2279
MspA1I	CMGCKG	3 cut(s)	213, 733, 2071
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	4 cut(s)	121, 815, 1302, 2196
MunI	CAATTG	1 cut(s)	2027
MvaI	CCWGG	3 cut(s)	815, 1302, 2196
MvnI	CGCG	2 cut(s)	213, 1329
MwoI	GCNNNNNNNGC	4 cut(s)	509, 1661, 1701, 1834
NciI	CCSGG	1 cut(s)	121
NlaIV	GGNNCC	5 cut(s)	432, 1299, 1569, 1629, 2511
NmuCI	GTSAC	2 cut(s)	242, 2132
NsiI	ATGCAT	2 cut(s)	715, 2179
NspI	RCATGY	2 cut(s)	1619, 2177
PaeI	GCATGC	2 cut(s)	1619, 2177
PaeR7I	CTCGAG	1 cut(s)	2388
PagI	TCATGA	2 cut(s)	685, 2122
PceI	AGGCCT	1 cut(s)	639
PciSI	GCTCTTC	2 cut(s)	1633, 2058
PcsI	WCGNNNNNNNCGW	2 cut(s)	1783, 1792
PdmI	GAANNNNTTC	3 cut(s)	864, 1164, 1773
PfeI	GAWTC	4 cut(s)	394, 568, 1939, 2521
Pfl23II	CGTACG	1 cut(s)	1907
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	7 cut(s)	212, 448, 732, 735, 1111, 1957, 2070
PleI	GAGTC	6 cut(s)	102, 198, 239, 911, 1339, 2530
PpsI	GAGTC	6 cut(s)	102, 198, 239, 911, 1339, 2530
PpuMI	RGGWCCY	2 cut(s)	665, 2509
Psp124BI	GAGCTC	1 cut(s)	514
Psp5II	RGGWCCY	2 cut(s)	665, 2509
Psp6I	CCWGG	3 cut(s)	813, 1300, 2194
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	813, 1300, 2194
PspLI	CGTACG	1 cut(s)	1907
PspN4I	GGNNCC	5 cut(s)	432, 1299, 1569, 1629, 2511
PspPI	GGNCC	8 cut(s)	4, 167, 231, 363, 665, 2509, 2707, 2771
PspPPI	RGGWCCY	2 cut(s)	665, 2509
PstI	CTGCAG	1 cut(s)	2215
PstNI	CAGNNNCTG	1 cut(s)	2219
PsuI	RGATCY	4 cut(s)	882, 1263, 1492, 1627
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	4 cut(s)	1805, 1909, 2049, 2579
RsaNI	GTAC	4 cut(s)	1804, 1908, 2048, 2578
RseI	CAYNNNNRTG	1 cut(s)	2279
SacI	GAGCTC	1 cut(s)	514
SacII	CCGCGG	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	1797
SapI	GCTCTTC	2 cut(s)	1633, 2058
SaqAI	TTAA	6 cut(s)	65, 144, 603, 779, 1845, 2842
SatI	GCNGC	7 cut(s)	211, 447, 731, 734, 1110, 1956, 2069
Sau96I	GGNCC	8 cut(s)	4, 167, 231, 363, 665, 2509, 2707, 2771
SchI	GAGTC	6 cut(s)	102, 199, 239, 911, 1340, 2530
ScrFI	CCNGG	4 cut(s)	121, 815, 1302, 2196
SduI	GDGCHC	4 cut(s)	378, 514, 1570, 1854
SfaNI	GCATC	5 cut(s)	700, 1329, 1588, 1810, 2271
SfcI	CTRYAG	1 cut(s)	2211
Sfr274I	CTCGAG	1 cut(s)	2388
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	6 cut(s)	4, 231, 363, 665, 2509, 2771
SlaI	CTCGAG	1 cut(s)	2388
SmiMI	CAYNNNNRTG	1 cut(s)	2279
SmlI	CTYRAG	5 cut(s)	602, 1222, 2033, 2388, 2416
SmoI	CTYRAG	5 cut(s)	602, 1222, 2033, 2388, 2416
SphI	GCATGC	2 cut(s)	1619, 2177
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	6 cut(s)	211, 213, 473, 728, 905, 2071
SspMI	CTAG	2 cut(s)	1196, 1632
SstI	GAGCTC	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	639
StyD4I	CCNGG	4 cut(s)	119, 813, 1300, 2194
StyI	CCWWGG	2 cut(s)	1461, 2251
TaaI	ACNGT	7 cut(s)	357, 767, 971, 1796, 1803, 1912, 2775
TaiI	ACGT	3 cut(s)	1789, 1984, 2323
TaqI	TCGA	7 cut(s)	508, 1777, 1798, 2389, 2464, 2583, 2727
TaqII	GACCGA	2 cut(s)	189, 380
TatI	WGTACW	2 cut(s)	1803, 2047
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	4 cut(s)	394, 568, 1939, 2521
Tru1I	TTAA	6 cut(s)	65, 144, 603, 779, 1845, 2842
Tru9I	TTAA	6 cut(s)	65, 144, 603, 779, 1845, 2842
TscAI	CASTG	5 cut(s)	404, 570, 772, 1974, 2835
TseFI	GTSAC	2 cut(s)	242, 2132
TseI	GCWGC	6 cut(s)	446, 730, 733, 1109, 1955, 2068
Tsp45I	GTSAC	2 cut(s)	242, 2132
TspGWI	ACGGA	1 cut(s)	1895
TspRI	CASTG	5 cut(s)	404, 570, 772, 1974, 2835
Vha464I	CTTAAG	1 cut(s)	602
VneI	GTGCAC	1 cut(s)	1850
VpaK11BI	GGWCC	6 cut(s)	4, 231, 363, 665, 2509, 2771
XapI	RAATTY	7 cut(s)	114, 127, 925, 944, 1414, 1769, 1839
XceI	RCATGY	2 cut(s)	1619, 2177
XhoI	CTCGAG	1 cut(s)	2388
XmiI	GTMKAC	3 cut(s)	1798, 1884, 2247
XmnI	GAANNNNTTC	3 cut(s)	864, 1164, 1773
XspI	CTAG	2 cut(s)	1196, 1632
Zsp2I	ATGCAT	2 cut(s)	715, 2179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.