Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014286

Physical Location & Seq

Genomic Coordinates Reverse (-)

28327649 .. 28328797

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCTGCCCAGCACTCGCCTTGTTCCGAATCGGGCTTTGAGGAATTTGATCATGCAGTGGTGCACTGCTTATGGAATTCCGTATGACCCTCCAGAGTCTGCAGATGCATCAGCAAACAGCTTTGCGGCTGCTTCTCCCTCCAAGGCTGCACTTGCAGCCAATAAAGCGACGGCAGGGCTTCTAATCCAACGGCTGGAGGATGGGTCACCATGTGCACAAACTATAGCTGCTCGCGAACTTCGATTGCTGGCAAAAACAGGAAGAGAAAACCGTGCTTTCATTGCGGAAGCTGGGGCAATTCCCCATCTTTGTAAGTTACTCTCGTCTCCAAACTCTGTTGCCCAAGAGAATTCTGTAACAGCAATGCTCAACTTATCGATATATGAAAAAAACAAAAGCCGAATTGTGGACGAAGAAGGGTGTTTGGGGTCTATTGTTAATGTTCTGAGGTTTGGGCACACGACTGAGGCGAGGGAGAATGCTGCAGCAACTTTATTTAGTCTCTCTGCAGTTCATGACTATAAGAAGAGAATAGCTGACGAGGAAGGGGGAATCGAAGCTTTGGCAGGATTGTTGAGAGAGGGTACCCCAAGAGGAAAGAAGGACGCCGTGACAGCTTTGTTTAACCTGTCGACTCACACCGAAAATTGCATGAGAATGATAGAGGCTGGGGCTGTTACAGCGCTTGTAAGCGCCTTGGGAAACGAAGGGGTTGCTGAGGAAGCAGCTGGTGCATTGGCATTGGTTGTCAGGCAGCCTTTTGCGGCTAAAGCGGTGGCAAAAGAGGACGTTGCAGTGGCAGGTTTGATAGGGATGATGCGTTGCGGGACTCCAAGGGGTAAAGAAAATGCAGTTGCAGCTTTGCTCGAGCTGTGCCGATGCGGTGGAGCTGCTGCAACCGAGAGGGTAGTTAAGGCACCAGCTTTGGCGGGGTTACTTCAGATGTTGCTTTTTACCGGTACAAAGCGGGCAAGAAGAAAGGCAGCTTCTCTTGCTAGAGTGTTCCAAAGGTGTGAGAATGCTGCAGCAATGCATTTTGGTGGTCTCGGCGTGGGATATGCACTTGCAGGTAACTCGACTGCAAATAGGGATTCGAGTTTTGTAGGTGATGTTTCAGTGCCGATGCCCATTTCCGTGCCTGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

383

Amino Acids

39.94

Weight (kDa)

8.95

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	46 - 238	7.3e-11	ARMC5
ARM_PUB	PF25598	74 - 336	3.8e-19	Plant U-box protein ARM repeat region
Arm	PF00514	89 - 126	6.9e-09	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29340
fragaria_vesca	FvH4_3g07220
malus_domestica	MD00G1008100.v1.1 MD10G1274600.v1.1
prunus_persica	Prupe.4G067800_v2.0.a1
pyrus_communis	pycom05g27330 pycom10g22910
rosa_chinensis	RchiOBHm_Chr5g0011931
rosa_laevigata	RLG00000031870
rosa_multiflora	Rmu_ssc0000228.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064660
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091600 Rh5BG087400 Rh5CG101300 Rh5DG088000
rosa_wichuraiana	Rw5G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	791, 1058
Acc65I	GGTACC	1 cut(s)	584
AccB1I	GGYRCC	2 cut(s)	584, 916
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	632
AccII	CGCG	1 cut(s)	234
AciI	CCGC	8 cut(s)	125, 284, 764, 773, 825, 882, 929, 967
AcsI	RAATTY	3 cut(s)	43, 75, 349
AcuI	CTGAAG	1 cut(s)	923
AcyI	GRCGYC	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	2 cut(s)	586, 961
AfeI	AGCGCT	1 cut(s)	684
AfiI	CCNNNNNNNGG	2 cut(s)	193, 406
AgeI	ACCGGT	1 cut(s)	956
Alw21I	GWGCWC	2 cut(s)	65, 217
Alw26I	GTCTC	3 cut(s)	330, 506, 1049
Alw44I	GTGCAC	2 cut(s)	61, 213
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	866
Aor51HI	AGCGCT	1 cut(s)	684
ApaLI	GTGCAC	2 cut(s)	61, 213
ApoI	RAATTY	3 cut(s)	43, 75, 349
AsiGI	ACCGGT	1 cut(s)	956
Asp718I	GGTACC	1 cut(s)	584
AspLEI	GCGC	2 cut(s)	685, 695
AsuHPI	GGTGA	2 cut(s)	198, 1118
AvaI	CYCGRG	1 cut(s)	866
BaeGI	GKGCMC	3 cut(s)	65, 217, 459
BanI	GGYRCC	2 cut(s)	584, 916
Bbv12I	GWGCWC	2 cut(s)	65, 217
BbvCI	CCTCAGC	1 cut(s)	717
BccI	CCATC	2 cut(s)	194, 312
BceAI	ACGGC	3 cut(s)	186, 206, 593
BcgI	CGANNNNNNTGC	4 cut(s)	695, 729, 1056, 1090
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	3 cut(s)	330, 506, 1049
BfaI	CTAG	1 cut(s)	996
BfmI	CTRYAG	5 cut(s)	99, 222, 483, 507, 1023
BfoI	RGCGCY	2 cut(s)	686, 696
BfuAI	ACCTGC	2 cut(s)	791, 1058
BmeT110I	CYCGRG	1 cut(s)	866
BmiI	GGNNCC	2 cut(s)	586, 918
BmsI	GCATC	5 cut(s)	94, 116, 807, 869, 1113
BpmI	CTGGAG	2 cut(s)	75, 215
Bpu10I	CCTNAGC	1 cut(s)	717
Bsa29I	ATCGAT	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	1049
BsaJI	CCNNGG	3 cut(s)	141, 696, 833
BsaWI	WCCGGW	1 cut(s)	956
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 406
Bse118I	RCCGGY	1 cut(s)	956
Bse3DI	GCAATG	3 cut(s)	279, 369, 1035
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	3 cut(s)	141, 696, 833
BseGI	GGATG	2 cut(s)	205, 819
BseLI	CCNNNNNNNGG	2 cut(s)	193, 406
BseMI	GCAATG	3 cut(s)	279, 369, 1035
BseMII	CTCAG	3 cut(s)	437, 456, 708
BseSI	GKGCMC	3 cut(s)	65, 217, 459
BseYI	CCCAGC	3 cut(s)	8, 290, 668
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	234
BshNI	GGYRCC	2 cut(s)	584, 916
BshTI	ACCGGT	1 cut(s)	956
BshVI	ATCGAT	1 cut(s)	377
BsiHKAI	GWGCWC	2 cut(s)	65, 217
BsiHKCI	CYCGRG	1 cut(s)	866
BsiSI	CCGG	1 cut(s)	957
BslFI	GGGAC	1 cut(s)	841
BslI	CCNNNNNNNGG	2 cut(s)	193, 406
BsmAI	GTCTC	3 cut(s)	330, 506, 1049
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	841
BsmI	GAATGC	2 cut(s)	484, 1024
Bso31I	GGTCTC	1 cut(s)	1049
BsoBI	CYCGRG	1 cut(s)	866
Bsp1286I	GDGCHC	3 cut(s)	65, 217, 459
Bsp143I	GATC	1 cut(s)	48
Bsp68I	TCGCGA	1 cut(s)	234
BspACI	CCGC	8 cut(s)	125, 284, 764, 773, 825, 882, 929, 967
BspCNI	CTCAG	3 cut(s)	438, 457, 709
BspDI	ATCGAT	1 cut(s)	377
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	586, 918
BspMAI	CTGCAG	4 cut(s)	103, 487, 511, 1027
BspMI	ACCTGC	2 cut(s)	791, 1058
BspT107I	GGYRCC	2 cut(s)	584, 916
BspTNI	GGTCTC	1 cut(s)	1049
BsrDI	GCAATG	3 cut(s)	279, 369, 1035
BsrFI	RCCGGY	1 cut(s)	956
BssAI	RCCGGY	1 cut(s)	956
BssECI	CCNNGG	3 cut(s)	141, 696, 833
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	606
BssT1I	CCWWGG	3 cut(s)	141, 696, 833
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	256, 521
BstACI	GRCGYC	1 cut(s)	606
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	232, 249, 969
BstDEI	CTNAG	3 cut(s)	446, 465, 717
BstEII	GGTNACC	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	205, 819
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	2 cut(s)	686, 696
BstHHI	GCGC	2 cut(s)	685, 695
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	3 cut(s)	330, 506, 1049
BstMBI	GATC	1 cut(s)	48
BstPI	GGTNACC	1 cut(s)	204
BstSFI	CTRYAG	5 cut(s)	99, 222, 483, 507, 1023
BstSLI	GKGCMC	3 cut(s)	65, 217, 459
BstUI	CGCG	1 cut(s)	234
Bsu15I	ATCGAT	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	205, 819
BtsI	GCAGTG	3 cut(s)	62, 63, 801
BtsIMutI	CAGTG	4 cut(s)	62, 63, 801, 1122
BtuMI	TCGCGA	1 cut(s)	234
BveI	ACCTGC	2 cut(s)	791, 1058
Cac8I	GCNNGC	3 cut(s)	232, 249, 969
CaiI	CAGNNNCTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	2 cut(s)	685, 695
Cfr10I	RCCGGY	1 cut(s)	956
ClaI	ATCGAT	1 cut(s)	377
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	2 cut(s)	585, 960
CspAI	ACCGGT	1 cut(s)	956
CviAII	CATG	4 cut(s)	52, 210, 515, 652
CviQI	GTAC	2 cut(s)	585, 960
DdeI	CTNAG	3 cut(s)	446, 465, 717
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DraIII	CACNNNGTG	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	256, 521
EarI	CTCTTC	2 cut(s)	256, 521
Eco130I	CCWWGG	3 cut(s)	141, 696, 833
Eco31I	GGTCTC	1 cut(s)	1049
Eco47III	AGCGCT	1 cut(s)	684
Eco57I	CTGAAG	1 cut(s)	923
Eco88I	CYCGRG	1 cut(s)	866
Eco91I	GGTNACC	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	204
EcoRI	GAATTC	2 cut(s)	75, 349
EcoT14I	CCWWGG	3 cut(s)	141, 696, 833
EcoT22I	ATGCAT	2 cut(s)	109, 1035
ErhI	CCWWGG	3 cut(s)	141, 696, 833
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	4 cut(s)	55, 213, 518, 655
FaqI	GGGAC	1 cut(s)	841
FatI	CATG	4 cut(s)	51, 209, 514, 651
FauI	CCCGC	3 cut(s)	818, 922, 960
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	632
FokI	GGATG	2 cut(s)	212, 826
FspBI	CTAG	1 cut(s)	996
GlaI	GCGC	2 cut(s)	684, 694
GsaI	CCCAGC	3 cut(s)	12, 294, 672
GsuI	CTGGAG	2 cut(s)	75, 215
HaeII	RGCGCY	2 cut(s)	686, 696
HapII	CCGG	1 cut(s)	957
HgaI	GACGC	1 cut(s)	614
HhaI	GCGC	2 cut(s)	685, 695
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	4 cut(s)	55, 213, 518, 655
Hin6I	GCGC	2 cut(s)	683, 693
HinP1I	GCGC	2 cut(s)	683, 693
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	6 cut(s)	28, 95, 552, 634, 829, 1091
HpaII	CCGG	1 cut(s)	957
HphI	GGTGA	2 cut(s)	198, 1118
Hpy166II	GTNNAC	4 cut(s)	63, 215, 409, 633
Hpy188I	TCNGA	3 cut(s)	27, 447, 942
Hpy188III	TCNNGA	3 cut(s)	92, 233, 515
Hpy8I	GTNNAC	4 cut(s)	63, 215, 409, 633
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	4 cut(s)	410, 539, 595, 701
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	789
HpyF3I	CTNAG	3 cut(s)	446, 465, 717
HpySE526I	ACGT	1 cut(s)	789
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	4 cut(s)	55, 213, 518, 655
HspAI	GCGC	2 cut(s)	683, 693
KpnI	GGTACC	1 cut(s)	588
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	887
LweI	GCATC	5 cut(s)	94, 116, 807, 869, 1113
MaeI	CTAG	1 cut(s)	996
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	7 cut(s)	204, 315, 355, 610, 676, 933, 1070
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	4 cut(s)	273, 425, 538, 987
MhlI	GDGCHC	3 cut(s)	65, 217, 459
MluCI	AATT	6 cut(s)	43, 75, 297, 349, 402, 646
MlyI	GAGTC	3 cut(s)	104, 628, 823
MmeI	TCCRAC	1 cut(s)	211
Mph1103I	ATGCAT	2 cut(s)	109, 1035
MseI	TTAA	3 cut(s)	438, 624, 912
MslI	CAYNNNNRTG	3 cut(s)	656, 1038, 1133
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	1 cut(s)	957
Mva1269I	GAATGC	2 cut(s)	484, 1024
MvnI	CGCG	1 cut(s)	234
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	4 cut(s)	55, 213, 518, 655
NlaIV	GGNNCC	2 cut(s)	586, 918
NmeAIII	GCCGAG	1 cut(s)	1026
NmuCI	GTSAC	2 cut(s)	204, 610
NruI	TCGCGA	1 cut(s)	234
NsiI	ATGCAT	2 cut(s)	109, 1035
PaeR7I	CTCGAG	1 cut(s)	866
PagI	TCATGA	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	2 cut(s)	238, 467
PctI	GAATGC	2 cut(s)	484, 1024
PfeI	GAWTC	3 cut(s)	28, 552, 1091
PflMI	CCANNNNNTGG	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	956
PleI	GAGTC	3 cut(s)	103, 628, 823
PpsI	GAGTC	3 cut(s)	103, 628, 823
PspEI	GGTNACC	1 cut(s)	204
PspFI	CCCAGC	3 cut(s)	8, 290, 668
PspN4I	GGNNCC	2 cut(s)	586, 918
PspXI	VCTCGAGB	1 cut(s)	866
PstI	CTGCAG	4 cut(s)	103, 487, 511, 1027
PstNI	CAGNNNCTG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	728
RruI	TCGCGA	1 cut(s)	234
RsaI	GTAC	2 cut(s)	586, 961
RsaNI	GTAC	2 cut(s)	585, 960
RseI	CAYNNNNRTG	3 cut(s)	656, 1038, 1133
SalI	GTCGAC	1 cut(s)	631
SaqAI	TTAA	3 cut(s)	438, 624, 912
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	3 cut(s)	104, 628, 823
SduI	GDGCHC	3 cut(s)	65, 217, 459
SfaNI	GCATC	5 cut(s)	94, 116, 807, 869, 1113
SfcI	CTRYAG	5 cut(s)	99, 222, 483, 507, 1023
Sfr274I	CTCGAG	1 cut(s)	866
SlaI	CTCGAG	1 cut(s)	866
SmiMI	CAYNNNNRTG	3 cut(s)	656, 1038, 1133
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
Sse9I	AATT	6 cut(s)	43, 75, 297, 349, 402, 646
SsiI	CCGC	8 cut(s)	125, 284, 764, 773, 825, 882, 929, 967
SspMI	CTAG	1 cut(s)	996
StyI	CCWWGG	3 cut(s)	141, 696, 833
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	7 cut(s)	241, 377, 555, 632, 867, 1076, 1094
TasI	AATT	6 cut(s)	43, 75, 297, 349, 402, 646
TauI	GCSGC	2 cut(s)	128, 767
TfiI	GAWTC	3 cut(s)	28, 552, 1091
Tru1I	TTAA	3 cut(s)	438, 624, 912
Tru9I	TTAA	3 cut(s)	438, 624, 912
TscAI	CASTG	4 cut(s)	62, 70, 801, 1122
TseFI	GTSAC	2 cut(s)	204, 610
Tsp45I	GTSAC	2 cut(s)	204, 610
TspDTI	ATGAA	3 cut(s)	268, 399, 503
TspGWI	ACGGA	2 cut(s)	69, 1123
TspRI	CASTG	4 cut(s)	62, 70, 801, 1122
Van91I	CCANNNNNTGG	1 cut(s)	193
VneI	GTGCAC	2 cut(s)	61, 213
XapI	RAATTY	3 cut(s)	43, 75, 349
XhoI	CTCGAG	1 cut(s)	866
XmiI	GTMKAC	1 cut(s)	632
XspI	CTAG	1 cut(s)	996
Zsp2I	ATGCAT	2 cut(s)	109, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.