Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014286

Physical Location & Seq

Genomic Coordinates Forward (+)

7587089 .. 7590905

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG087400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGGCTTCCGCGGCGATATTCTCTTCGTTACGGCGGCGGAGGTCCCCGTCTCTGGAGGCCTTTTTAGCTCCGGTGGACCTCTCCGACGTGGCGCTTGTACAGACTCTGGTTTCGGTCACGGCGGAGATTGTGTCGTCGTTTTCAGACAGGCTGTTCTATTTCCAGAGACGGAATTCGAGGTCGTTGGTCCGGAAGGTCGAGGTCTTTCTCGTGCTTTTGGAGTCTTTGAACGACTCCGCCGCCGGGCCGACCCTGCCGTGGACGGCGGTGATTTGCCTCAAGGAGCTTTATCTGCTGCTGTACAGATCCAAGATTCTCCTCGATTACTGCGCCCAGTCCAGTAAGCTCTGGCTTTTGCTCCAGCACCATCCGATTTCCGGCCATTTCCACGACTTGAATCAGGAAATCTCGACCCTTCTGGACGTTTTCCCGATTGACGAGGTTGAGTTGGGGGAGGACGTGAGGGAGCAGGTTGAGCTTCTGCAGAGACAGGCCAGGAGGGCGAGGCTGTTGATCGACGAAGCCGACGAGGAGTTGAGGATTCAGTTGTTTAGTTTCCTACATGAATTCGAGATGGGAAGGGTGCCGAATTCGGATGACGTGTGCGTGTTCTTCGATCAGAGATTGGGGATTAGGGATGCCAAGAGCTGCAGGCATGAGATTGAGTTCTTGGAAGAGCAGATTGTGAATCACGAGGGGGATGTTGAGCCTACAGTGTCTGTGCTTAATGGGTTTGTGGCGTTCACAAGGTATTGCAGGTTCTTGCTTTTCGGATTCGAGGAGGATGAGGTGGGAGTGGGAGTTGGAGTGGGAGTTGGGGGTCAGCAGAGGAAGCCGAGGAAGGGTTTGATTAGTCAGGAGATTGCTGAGACTTTTATTACGATTCCCAAGGATTTTTGCTGCCCTATTAGTTTGGATTTGATGAGAGAGCCTGTGATAATCTCGACCGGGCAGACGTATGATCGGATTTCCATTTCGAGGTGGCTGGAAGAGGGGCATTGTACTTGTCCGAAAACAGGTCAAATGCTGCCCAATACCAGGCTTGTTCCGAATCGGGCGTTGAGGAATTTGATCTTGCAGTGGTGCACTGCTTTTGGAGTTCCTTATGATTCTCCCGAGTGTACTGAAGCATCAGCAGAAAGCTTTGCAGGGGCTTCCCCCTCTAAGGCTGCACTTGCAGCCAACAGGGCTACAGCAGGGCTTTTGATCAAACGGCTAGCGGAGGATGGATCCACATGCGGACAGACTATAGCTGCTCGGGAGATTCGGTTGTTGGCCAAGACTGGAAGAGAGAACCGTGCTTTCATTGCGGAAGCTGGCGCAATTCCCCATCTTCGGAAGCTGCTCTCTTCTCCAAACTCGGTTGCACAAGAGAACTCTGTGACGGCAATGCTTAACCTGTCGATTTATGACAAAAACAAAAGCAGGATTATGGATGAAGAAGGGTGTTTGGGATCGATTGTCAATGTGCTGAGGTTTGGGCACACAACAGAAGCAAGGGAGAATGCCGCGGCAACGTTGTTTAGTCTGTCTGCAGTTCATGACTACAAGAAGAGAATAGCGGATGAGGAAGGGGGAATTGAAGCCTTGGCAGGGCTGTTGTTACATGGCACCCAAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTTAACTTGTCCACGCACACAGAAAATTGCGCGAGAATGATTGAGGCTGGGGCTGTAACAGCATTGGTAAGTGCATTGGGAATTGAAGGTGTTGCTGAGGAATCAGCAGGTGCATTGGCCTTGATTGTTAGGCAGCCAAGTGGAGCTACAGCAGTAGGAAAAGAGGAAATGGCTGTGGCTGGTTTAATAGGGATGATGCGTTGCGGGACTCCAAGGGGTAAAGAAAATGCAGTTGCAGCTTTGCTCGAGTTGTGTCGGCATGGTGGAGCCGCTGCAACTGAGAGAGTAGTCAAGGCACCATCTTTGGCTGGTTTGCTTCAGACGCTGCTGTTCACCGGTACAAAGAGGGCAAGAAGAAAGGCGGCGTCTCTTGCTAGAGTGTTTCAAAGGTGTGAGAATGCGTCGACGATGCATTATGGTGGTCTCGGAGTAGGATACGCATTTGCAGGCAACTCGGCTGCAAATCGTGATACAAGTTTCGTTGGTGATGTCTCAGTGCAAATGTCCATTTCAGTGCCTGTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009814 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

724

Amino Acids

78.95

Weight (kDa)

6.17

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	56 - 168	3.2e-14	PUB10-like, N-terminal domain
U-box	PF04564	295 - 362	1.8e-18	U-box domain
ARM_PUB	PF25598	403 - 679	1.2e-17	Plant U-box protein ARM repeat region
Arm	PF00514	431 - 468	1e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29340
fragaria_vesca	FvH4_3g07220
malus_domestica	MD00G1008100.v1.1 MD10G1274600.v1.1
prunus_persica	Prupe.4G067800_v2.0.a1
pyrus_communis	pycom05g27330 pycom10g22910
rosa_chinensis	RchiOBHm_Chr5g0011931
rosa_laevigata	RLG00000031870
rosa_multiflora	Rmu_ssc0000228.1_g000008
rosa_roxburghii	Rroxscaffold_1G00064660
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091600 Rh5BG087400 Rh5CG101300 Rh5DG088000
rosa_wichuraiana	Rw5G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1745
Acc36I	ACCTGC	3 cut(s)	460, 747, 1745
AccB1I	GGYRCC	3 cut(s)	583, 1610, 1942
AccI	GTMKAC	1 cut(s)	2051
AccII	CGCG	3 cut(s)	11, 1511, 1679
AccIII	TCCGGA	1 cut(s)	189
AclI	AACGTT	1 cut(s)	1517
AclWI	GGATC	4 cut(s)	300, 1224, 1237, 1462
AcoI	YGGCCR	2 cut(s)	379, 1275
AcsI	RAATTY	4 cut(s)	172, 566, 589, 1066
AcuI	CTGAAG	2 cut(s)	1146, 1949
AcyI	GRCGYC	1 cut(s)	2012
AfaI	GTAC	5 cut(s)	99, 302, 1003, 1123, 1987
AflIII	ACRYGT	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	1982
AgsI	TTSAA	5 cut(s)	229, 397, 1583, 1733, 2033
AjiI	CACGTC	3 cut(s)	88, 460, 601
AjnI	CCWGG	2 cut(s)	494, 1037
Alw21I	GWGCWC	1 cut(s)	1088
Alw26I	GTCTC	7 cut(s)	54, 160, 481, 863, 2019, 2075, 2143
Alw44I	GTGCAC	1 cut(s)	1084
AlwI	GGATC	4 cut(s)	300, 1224, 1237, 1462
AlwNI	CAGNNNCTG	4 cut(s)	106, 719, 1972, 2165
Ama87I	CYCGRG	3 cut(s)	1115, 1257, 1892
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	6 cut(s)	57, 245, 379, 492, 1275, 1764
ApaLI	GTGCAC	1 cut(s)	1084
ApoI	RAATTY	4 cut(s)	172, 566, 589, 1066
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AsiGI	ACCGGT	1 cut(s)	1982
AspLEI	GCGC	4 cut(s)	94, 332, 1322, 1679
AspS9I	GGNCC	4 cut(s)	42, 76, 187, 245
AsuC2I	CCSGG	2 cut(s)	244, 949
AsuHPI	GGTGA	3 cut(s)	280, 1972, 2144
AsuNHI	GCTAGC	1 cut(s)	1216
AvaI	CYCGRG	3 cut(s)	1115, 1257, 1892
AvaII	GGWCC	3 cut(s)	42, 76, 187
BaeGI	GKGCMC	2 cut(s)	1088, 1485
BalI	TGGCCA	1 cut(s)	1277
BamHI	GGATCC	1 cut(s)	1229
BanI	GGYRCC	3 cut(s)	583, 1610, 1942
BauI	CACGAG	2 cut(s)	209, 692
Bbv12I	GWGCWC	1 cut(s)	1088
BbvCI	CCTCAGC	2 cut(s)	1472, 1743
BccI	CCATC	5 cut(s)	375, 568, 1220, 1338, 1954
BceAI	ACGGC	6 cut(s)	47, 135, 241, 279, 1229, 1401
BcgI	CGANNNNNNTGC	2 cut(s)	2082, 2116
BciT130I	CCWGG	2 cut(s)	496, 1039
BciVI	GTATCC	1 cut(s)	2075
BclI	TGATCA	1 cut(s)	1206
BcnI	CCSGG	2 cut(s)	244, 949
BcoDI	GTCTC	7 cut(s)	54, 160, 481, 863, 2019, 2075, 2143
BfaI	CTAG	2 cut(s)	1217, 2022
BfmI	CTRYAG	7 cut(s)	482, 649, 711, 1191, 1248, 1533, 1794
BfoI	RGCGCY	1 cut(s)	95
BfuAI	ACCTGC	3 cut(s)	460, 747, 1745
BfuI	GTATCC	1 cut(s)	2075
BglI	GCCNNNNNGGC	2 cut(s)	500, 1187
Bme1390I	CCNGG	4 cut(s)	244, 496, 949, 1039
Bme18I	GGWCC	3 cut(s)	42, 76, 187
BmeT110I	CYCGRG	3 cut(s)	1115, 1257, 1892
BmgBI	CACGTC	3 cut(s)	88, 460, 601
BmgT120I	GGNCC	4 cut(s)	42, 76, 187, 245
BmiI	GGNNCC	6 cut(s)	44, 585, 1231, 1612, 1915, 1944
BmrFI	CCNGG	4 cut(s)	244, 496, 949, 1039
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	5 cut(s)	628, 1139, 1621, 1833, 2046
BmtI	GCTAGC	1 cut(s)	1220
BmuI	ACTGGG	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	74, 344
Bpu10I	CCTNAGC	2 cut(s)	1472, 1743
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	244, 949
Bsa29I	ATCGAT	1 cut(s)	1457
BsaHI	GRCGYC	1 cut(s)	2012
BsaI	GGTCTC	1 cut(s)	2075
BsaJI	CCNNGG	7 cut(s)	9, 257, 836, 888, 1509, 1587, 1859
BsaWI	WCCGGW	3 cut(s)	70, 189, 1982
Bse118I	RCCGGY	1 cut(s)	1982
Bse1I	ACTGG	3 cut(s)	334, 339, 1288
Bse3DI	GCAATG	2 cut(s)	1305, 1395
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	496, 1039
BseCI	ATCGAT	1 cut(s)	1457
BseDI	CCNNGG	7 cut(s)	9, 257, 836, 888, 1509, 1587, 1859
BseMI	GCAATG	2 cut(s)	1305, 1395
BseMII	CTCAG	5 cut(s)	858, 1463, 1734, 1917, 2154
BseNI	ACTGG	3 cut(s)	334, 339, 1288
BseRI	GAGGAG	3 cut(s)	308, 545, 794
BseSI	GKGCMC	2 cut(s)	1088, 1485
BseYI	CCCAGC	1 cut(s)	1694
BsgI	GTGCAG	1 cut(s)	1155
Bsh1236I	CGCG	3 cut(s)	11, 1511, 1679
Bsh1285I	CGRYCG	1 cut(s)	948
BshFI	GGCC	6 cut(s)	59, 247, 381, 494, 1277, 1766
BshNI	GGYRCC	3 cut(s)	583, 1610, 1942
BshTI	ACCGGT	1 cut(s)	1982
BshVI	ATCGAT	1 cut(s)	1457
BsiEI	CGRYCG	1 cut(s)	948
BsiHKAI	GWGCWC	1 cut(s)	1088
BsiHKCI	CYCGRG	3 cut(s)	1115, 1257, 1892
BsiSI	CCGG	6 cut(s)	71, 190, 243, 378, 948, 1983
BslFI	GGGAC	2 cut(s)	28, 1867
BsmAI	GTCTC	7 cut(s)	54, 160, 481, 863, 2019, 2075, 2143
BsmBI	CGTCTC	3 cut(s)	54, 160, 2019
BsmFI	GGGAC	2 cut(s)	28, 1867
BsmI	GAATGC	2 cut(s)	1510, 2050
BsnI	GGCC	6 cut(s)	59, 247, 381, 494, 1277, 1766
Bso31I	GGTCTC	1 cut(s)	2075
BsoBI	CYCGRG	3 cut(s)	1115, 1257, 1892
Bsp1286I	GDGCHC	2 cut(s)	1088, 1485
Bsp13I	TCCGGA	1 cut(s)	189
Bsp1407I	TGTACA	2 cut(s)	97, 300
Bsp143I	GATC	8 cut(s)	305, 513, 616, 961, 1071, 1206, 1229, 1454
BspANI	GGCC	6 cut(s)	59, 247, 381, 494, 1277, 1766
BspCNI	CTCAG	5 cut(s)	859, 1464, 1735, 1918, 2153
BspDI	ATCGAT	1 cut(s)	1457
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	3 cut(s)	11, 1511, 1679
BspHI	TCATGA	1 cut(s)	1540
BspLI	GGNNCC	6 cut(s)	44, 585, 1231, 1612, 1915, 1944
BspMAI	CTGCAG	3 cut(s)	486, 653, 1537
BspMI	ACCTGC	3 cut(s)	460, 747, 1745
BspOI	GCTAGC	1 cut(s)	1220
BspPI	GGATC	4 cut(s)	300, 1224, 1237, 1462
BspQI	GCTCTTC	1 cut(s)	669
BspT107I	GGYRCC	3 cut(s)	583, 1610, 1942
BspTNI	GGTCTC	1 cut(s)	2075
BsrDI	GCAATG	2 cut(s)	1305, 1395
BsrFI	RCCGGY	1 cut(s)	1982
BsrGI	TGTACA	2 cut(s)	97, 300
BsrI	ACTGG	3 cut(s)	334, 339, 1288
BssAI	RCCGGY	1 cut(s)	1982
BssECI	CCNNGG	7 cut(s)	9, 257, 836, 888, 1509, 1587, 1859
BssMI	GATC	8 cut(s)	305, 513, 616, 961, 1071, 1206, 1229, 1454
BssNI	GRCGYC	1 cut(s)	2012
BssSI	CACGAG	2 cut(s)	209, 692
BssT1I	CCWWGG	3 cut(s)	888, 1587, 1859
Bst2BI	CACGAG	2 cut(s)	209, 692
Bst2UI	CCWGG	2 cut(s)	496, 1039
Bst4CI	ACNGT	2 cut(s)	715, 1298
Bst6I	CTCTTC	6 cut(s)	28, 669, 984, 1282, 1354, 1547
BstACI	GRCGYC	1 cut(s)	2012
BstAUI	TGTACA	2 cut(s)	97, 300
BstC8I	GCNNGC	4 cut(s)	653, 1218, 1318, 2095
BstDEI	CTNAG	6 cut(s)	867, 1164, 1472, 1743, 1926, 2140
BstDSI	CCRYGG	3 cut(s)	9, 257, 1509
BstFNI	CGCG	3 cut(s)	11, 1511, 1679
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	4 cut(s)	94, 332, 1322, 1679
BstKTI	GATC	8 cut(s)	308, 516, 619, 964, 1074, 1209, 1232, 1457
BstMAI	GTCTC	7 cut(s)	54, 160, 481, 863, 2019, 2075, 2143
BstMBI	GATC	8 cut(s)	305, 513, 616, 961, 1071, 1206, 1229, 1454
BstMCI	CGRYCG	1 cut(s)	948
BstNI	CCWGG	2 cut(s)	496, 1039
BstNSI	RCATGY	1 cut(s)	1239
BstSCI	CCNGG	4 cut(s)	242, 494, 947, 1037
BstSFI	CTRYAG	7 cut(s)	482, 649, 711, 1191, 1248, 1533, 1794
BstSLI	GKGCMC	2 cut(s)	1088, 1485
BstUI	CGCG	3 cut(s)	11, 1511, 1679
BstX2I	RGATCY	2 cut(s)	305, 1229
BstYI	RGATCY	2 cut(s)	305, 1229
Bsu15I	ATCGAT	1 cut(s)	1457
BsuI	GTATCC	1 cut(s)	2075
BsuRI	GGCC	6 cut(s)	59, 247, 381, 494, 1277, 1766
BsuTUI	ATCGAT	1 cut(s)	1457
BtgI	CCRYGG	3 cut(s)	9, 257, 1509
BtrI	CACGTC	3 cut(s)	88, 460, 601
BtsI	GCAGTG	2 cut(s)	1085, 1086
BtsIMutI	CAGTG	5 cut(s)	720, 1085, 1086, 2148, 2166
BveI	ACCTGC	3 cut(s)	460, 747, 1745
Cac8I	GCNNGC	4 cut(s)	653, 1218, 1318, 2095
CaiI	CAGNNNCTG	4 cut(s)	106, 719, 1972, 2165
CciI	TCATGA	1 cut(s)	1540
CfoI	GCGC	4 cut(s)	94, 332, 1322, 1679
Cfr10I	RCCGGY	1 cut(s)	1982
Cfr13I	GGNCC	4 cut(s)	42, 76, 187, 245
Cfr42I	CCGCGG	2 cut(s)	12, 1512
ClaI	ATCGAT	1 cut(s)	1457
CseI	GACGC	3 cut(s)	1978, 2001, 2037
Csp6I	GTAC	5 cut(s)	98, 301, 1002, 1122, 1986
CspAI	ACCGGT	1 cut(s)	1982
CviAII	CATG	6 cut(s)	563, 656, 1236, 1541, 1607, 1907
CviQI	GTAC	5 cut(s)	98, 301, 1002, 1122, 1986
DdeI	CTNAG	6 cut(s)	867, 1164, 1472, 1743, 1926, 2140
DpnI	GATC	8 cut(s)	307, 515, 618, 963, 1073, 1208, 1231, 1456
DpnII	GATC	8 cut(s)	305, 513, 616, 961, 1071, 1206, 1229, 1454
EaeI	YGGCCR	2 cut(s)	379, 1275
Eam1104I	CTCTTC	6 cut(s)	28, 669, 984, 1282, 1354, 1547
EarI	CTCTTC	6 cut(s)	28, 669, 984, 1282, 1354, 1547
EciI	GGCGGA	3 cut(s)	52, 137, 226
Eco130I	CCWWGG	3 cut(s)	888, 1587, 1859
Eco147I	AGGCCT	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	2075
Eco47I	GGWCC	3 cut(s)	42, 76, 187
Eco57I	CTGAAG	2 cut(s)	1146, 1949
Eco88I	CYCGRG	3 cut(s)	1115, 1257, 1892
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRI	GAATTC	3 cut(s)	172, 566, 589
EcoRII	CCWGG	2 cut(s)	494, 1037
EcoT14I	CCWWGG	3 cut(s)	888, 1587, 1859
EcoT22I	ATGCAT	1 cut(s)	2061
ErhI	CCWWGG	3 cut(s)	888, 1587, 1859
Esp3I	CGTCTC	3 cut(s)	54, 160, 2019
FaeI	CATG	6 cut(s)	566, 659, 1239, 1544, 1610, 1910
FaqI	GGGAC	2 cut(s)	28, 1867
FatI	CATG	6 cut(s)	562, 655, 1235, 1540, 1606, 1906
FauI	CCCGC	1 cut(s)	1844
FbaI	TGATCA	1 cut(s)	1206
FblI	GTMKAC	1 cut(s)	2051
FspBI	CTAG	2 cut(s)	1217, 2022
GlaI	GCGC	4 cut(s)	93, 331, 1321, 1678
GsaI	CCCAGC	1 cut(s)	1698
GsuI	CTGGAG	2 cut(s)	74, 344
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	6 cut(s)	59, 247, 381, 494, 1277, 1766
HapII	CCGG	6 cut(s)	71, 190, 243, 378, 948, 1983
HgaI	GACGC	3 cut(s)	1978, 2001, 2037
HhaI	GCGC	4 cut(s)	94, 332, 1322, 1679
Hin1I	GRCGYC	1 cut(s)	2012
Hin1II	CATG	6 cut(s)	566, 659, 1239, 1544, 1610, 1910
Hin6I	GCGC	4 cut(s)	92, 330, 1320, 1677
HinP1I	GCGC	4 cut(s)	92, 330, 1320, 1677
HincII	GTYRAC	1 cut(s)	2052
HindII	GTYRAC	1 cut(s)	2052
HindIII	AAGCTT	1 cut(s)	1141
HpaII	CCGG	6 cut(s)	71, 190, 243, 378, 948, 1983
HphI	GGTGA	3 cut(s)	280, 1972, 2144
Hpy166II	GTNNAC	8 cut(s)	76, 261, 744, 1086, 1122, 1659, 1980, 2052
Hpy8I	GTNNAC	8 cut(s)	76, 261, 744, 1086, 1122, 1659, 1980, 2052
Hpy99I	CGWCG	6 cut(s)	89, 139, 521, 530, 2053, 2056
HpyAV	CCTTC	8 cut(s)	187, 425, 573, 835, 1436, 1565, 1621, 1727
HpyCH4III	ACNGT	2 cut(s)	715, 1298
HpyCH4IV	ACGT	6 cut(s)	87, 423, 459, 600, 956, 1517
HpyF3I	CTNAG	6 cut(s)	867, 1164, 1472, 1743, 1926, 2140
HpySE526I	ACGT	6 cut(s)	87, 423, 459, 600, 956, 1517
Hsp92I	GRCGYC	1 cut(s)	2012
Hsp92II	CATG	6 cut(s)	566, 659, 1239, 1544, 1610, 1910
HspAI	GCGC	4 cut(s)	92, 330, 1320, 1677
Kpn2I	TCCGGA	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	1206
KspI	CCGCGG	2 cut(s)	12, 1512
Kzo9I	GATC	8 cut(s)	305, 513, 616, 961, 1071, 1206, 1229, 1454
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	6 cut(s)	73, 283, 363, 466, 1790, 1913
LweI	GCATC	5 cut(s)	628, 1139, 1621, 1833, 2046
MaeI	CTAG	2 cut(s)	1217, 2022
MaeII	ACGT	6 cut(s)	87, 423, 459, 600, 956, 1517
MaeIII	GTNAC	6 cut(s)	27, 115, 1381, 1602, 1636, 1702
MalI	GATC	8 cut(s)	307, 515, 618, 963, 1073, 1208, 1231, 1456
MboI	GATC	8 cut(s)	305, 513, 616, 961, 1071, 1206, 1229, 1454
MflI	RGATCY	2 cut(s)	305, 1229
MhlI	GDGCHC	2 cut(s)	1088, 1485
MlsI	TGGCCA	1 cut(s)	1277
MluCI	AATT	8 cut(s)	172, 566, 589, 1066, 1323, 1578, 1672, 1728
MluNI	TGGCCA	1 cut(s)	1277
MlyI	GAGTC	4 cut(s)	97, 227, 230, 1849
MmeI	TCCRAC	2 cut(s)	108, 784
Mox20I	TGGCCA	1 cut(s)	1277
Mph1103I	ATGCAT	1 cut(s)	2061
MroI	TCCGGA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	1277
MseI	TTAA	4 cut(s)	726, 1395, 1650, 1832
MslI	CAYNNNNRTG	2 cut(s)	2064, 2159
Msp20I	TGGCCA	1 cut(s)	1277
MspA1I	CMGCKG	3 cut(s)	11, 1511, 1919
MspI	CCGG	6 cut(s)	71, 190, 243, 378, 948, 1983
MspR9I	CCNGG	4 cut(s)	244, 496, 949, 1039
Mva1269I	GAATGC	2 cut(s)	1510, 2050
MvaI	CCWGG	2 cut(s)	496, 1039
MvnI	CGCG	3 cut(s)	11, 1511, 1679
NciI	CCSGG	2 cut(s)	244, 949
NdeII	GATC	8 cut(s)	305, 513, 616, 961, 1071, 1206, 1229, 1454
NheI	GCTAGC	1 cut(s)	1216
NlaIII	CATG	6 cut(s)	566, 659, 1239, 1544, 1610, 1910
NlaIV	GGNNCC	6 cut(s)	44, 585, 1231, 1612, 1915, 1944
NmeAIII	GCCGAG	2 cut(s)	861, 2081
NmuCI	GTSAC	3 cut(s)	115, 1381, 1636
NsiI	ATGCAT	1 cut(s)	2061
NspI	RCATGY	1 cut(s)	1239
PaeR7I	CTCGAG	1 cut(s)	1892
PagI	TCATGA	1 cut(s)	1540
PaqCI	CACCTGC	1 cut(s)	1745
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	2 cut(s)	522, 525
PctI	GAATGC	2 cut(s)	1510, 2050
PinAI	ACCGGT	1 cut(s)	1982
PleI	GAGTC	4 cut(s)	97, 227, 229, 1849
PpsI	GAGTC	4 cut(s)	97, 227, 229, 1849
PpuMI	RGGWCCY	1 cut(s)	42
Psp1406I	AACGTT	1 cut(s)	1517
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	494, 1037
PspFI	CCCAGC	1 cut(s)	1694
PspGI	CCWGG	2 cut(s)	494, 1037
PspN4I	GGNNCC	6 cut(s)	44, 585, 1231, 1612, 1915, 1944
PspPI	GGNCC	4 cut(s)	42, 76, 187, 245
PspPPI	RGGWCCY	1 cut(s)	42
PspXI	VCTCGAGB	1 cut(s)	1892
PsrI	GAACNNNNNNTAC	2 cut(s)	743, 775
PstI	CTGCAG	3 cut(s)	486, 653, 1537
PstNI	CAGNNNCTG	4 cut(s)	106, 719, 1972, 2165
PsuI	RGATCY	2 cut(s)	305, 1229
RsaI	GTAC	5 cut(s)	99, 302, 1003, 1123, 1987
RsaNI	GTAC	5 cut(s)	98, 301, 1002, 1122, 1986
RseI	CAYNNNNRTG	2 cut(s)	2064, 2159
SacII	CCGCGG	2 cut(s)	12, 1512
SalI	GTCGAC	1 cut(s)	2050
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	4 cut(s)	726, 1395, 1650, 1832
Sau3AI	GATC	8 cut(s)	305, 513, 616, 961, 1071, 1206, 1229, 1454
Sau96I	GGNCC	4 cut(s)	42, 76, 187, 245
SchI	GAGTC	4 cut(s)	97, 227, 230, 1849
ScrFI	CCNGG	4 cut(s)	244, 496, 949, 1039
SduI	GDGCHC	2 cut(s)	1088, 1485
SfaNI	GCATC	5 cut(s)	628, 1139, 1621, 1833, 2046
SfcI	CTRYAG	7 cut(s)	482, 649, 711, 1191, 1248, 1533, 1794
Sfr274I	CTCGAG	1 cut(s)	1892
Sfr303I	CCGCGG	2 cut(s)	12, 1512
SgrBI	CCGCGG	2 cut(s)	12, 1512
SgrDI	CGTCGACG	1 cut(s)	2050
SinI	GGWCC	3 cut(s)	42, 76, 187
SlaI	CTCGAG	1 cut(s)	1892
SmiMI	CAYNNNNRTG	2 cut(s)	2064, 2159
SmlI	CTYRAG	2 cut(s)	278, 1892
SmoI	CTYRAG	2 cut(s)	278, 1892
Sse9I	AATT	8 cut(s)	172, 566, 589, 1066, 1323, 1578, 1672, 1728
SseBI	AGGCCT	1 cut(s)	59
SspMI	CTAG	2 cut(s)	1217, 2022
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	4 cut(s)	242, 494, 947, 1037
StyI	CCWWGG	3 cut(s)	888, 1587, 1859
TaaI	ACNGT	2 cut(s)	715, 1298
TaiI	ACGT	6 cut(s)	90, 426, 462, 603, 959, 1520
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	8 cut(s)	172, 566, 589, 1066, 1323, 1578, 1672, 1728
TatI	WGTACW	4 cut(s)	97, 300, 1001, 1121
TauI	GCSGC	7 cut(s)	14, 37, 242, 1511, 1514, 1919, 2012
Tru1I	TTAA	4 cut(s)	726, 1395, 1650, 1832
Tru9I	TTAA	4 cut(s)	726, 1395, 1650, 1832
TscAI	CASTG	5 cut(s)	720, 1085, 1093, 2148, 2166
TseFI	GTSAC	3 cut(s)	115, 1381, 1636
Tsp45I	GTSAC	3 cut(s)	115, 1381, 1636
TspDTI	ATGAA	4 cut(s)	579, 1294, 1452, 1529
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	5 cut(s)	720, 1085, 1093, 2148, 2166
VneI	GTGCAC	1 cut(s)	1084
VpaK11BI	GGWCC	3 cut(s)	42, 76, 187
XapI	RAATTY	4 cut(s)	172, 566, 589, 1066
XceI	RCATGY	1 cut(s)	1239
XhoI	CTCGAG	1 cut(s)	1892
XmiI	GTMKAC	1 cut(s)	2051
XspI	CTAG	2 cut(s)	1217, 2022
Zsp2I	ATGCAT	1 cut(s)	2061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.